mRNA_P-wetherbeei_contig15693.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15693.1.1
Unique NamemRNA_P-wetherbeei_contig15693.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15693.1.1 vs. uniprot
Match: A0A1F3AEM0_9PROT (tRNA pseudouridine synthase A n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F3AEM0_9PROT)

HSP 1 Score: 488 bits (1257), Expect = 5.860e-174
Identity = 240/262 (91.60%), Postives = 248/262 (94.66%), Query Frame = 1
Query:    1 VPRYKLIVEYDGGPFVGWQRQPNGPTVQALLEDAIFAMSGERVQVQGAGRTDSGVHALGQVAHFDLANEMAADKVQAALNFHLKPNPIALPSVEIAPAKFHARFSATWRRYRYRILNRRAPPTLDSGHVWHVPARLDLDAMIDAAAALQGHHDFNSFRSTACQAPSSIKTLDLMRVGRDGDEIHIDVGARSFLHNQVRILVGTLRLVGRGQWSRRDVEEALAACDRTRGGPTAPPQGLCLMEVRYDLG--GGHDAEIASDEE 780
            +PRYKLIVEYDGGPFVGWQRQPNGPT+QALLEDAIFAMSGERV VQGAGRTDSGVHALGQVAHFDL +EMAADKVQAALN+HLKPNPIALPSVEI PAKFHARFSATWRRYRYRILNRRAPPTLD GHVWHVPARLDL+AMIDAAA LQGHHDFNSFRSTACQAPSS+KTLDL+R GRDG EI IDVGARSFLHNQVRILVGTLRLVGRGQWSR DVEEALAA DRTR GPTAPPQGLCLMEVRYDLG  GG DAE+ASDEE
Sbjct:    1 MPRYKLIVEYDGGPFVGWQRQPNGPTIQALLEDAIFAMSGERVSVQGAGRTDSGVHALGQVAHFDLTSEMAADKVQAALNYHLKPNPIALPSVEIVPAKFHARFSATWRRYRYRILNRRAPPTLDRGHVWHVPARLDLEAMIDAAAILQGHHDFNSFRSTACQAPSSVKTLDLLRAGRDGAEIQIDVGARSFLHNQVRILVGTLRLVGRGQWSRHDVEEALAARDRTRAGPTAPPQGLCLMEVRYDLGADGGGDAEMASDEE 262          
BLAST of mRNA_P-wetherbeei_contig15693.1.1 vs. uniprot
Match: A0A521LCC1_9HYPH (tRNA pseudouridine synthase A n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LCC1_9HYPH)

HSP 1 Score: 399 bits (1025), Expect = 1.250e-138
Identity = 197/261 (75.48%), Postives = 216/261 (82.76%), Query Frame = 1
Query:    1 VPRYKLIVEYDGGPFVGWQRQPNGPTVQALLEDAIFAMSGERVQVQGAGRTDSGVHALGQVAHFDLANEMAADKVQAALNFHLKPNPIALPSVEIAPAKFHARFSATWRRYRYRILNRRAPPTLDSGHVWHVPARLDLDAMIDAAAALQGHHDFNSFRSTACQAPSSIKTLDLMRVGRDGDEIHIDVGARSFLHNQVRILVGTLRLVGRGQWSRRDVEEALAACDRTRGGPTAPPQGLCLMEVRYDLG-GGHDAEIASDEE 780
            +PRYKL +EYDG PFVGWQRQ NGP+VQA LEDAIFA SGER  VQGAGRTD+GVHA GQVAHFDLA E   + V++ALNFHLKP P+A+   E   A FHARFSATWRRYRYRILNRRAPP LD G +WHV A LD  AM +AA+ L GHHDFNSFRSTACQAPS++KTLDL  V RDGDEI +DVG+RSFLHNQVRILVGTL LVGRGQW+RRDVEEALAA DRTR GPTAPPQGLCLMEVRY L   G DAE A D++
Sbjct:    1 MPRYKLTIEYDGEPFVGWQRQENGPSVQAALEDAIFAFSGERAAVQGAGRTDAGVHARGQVAHFDLAEEKPVETVRSALNFHLKPRPVAVVLAEQVTADFHARFSATWRRYRYRILNRRAPPALDRGQLWHVGAGLDAAAMAEAASVLVGHHDFNSFRSTACQAPSALKTLDLFEVSRDGDEIRVDVGSRSFLHNQVRILVGTLGLVGRGQWTRRDVEEALAARDRTRAGPTAPPQGLCLMEVRYGLADAGGDAEEAVDDQ 261          
BLAST of mRNA_P-wetherbeei_contig15693.1.1 vs. uniprot
Match: A0A259MUB9_9PROT (tRNA pseudouridine synthase A n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MUB9_9PROT)

HSP 1 Score: 395 bits (1016), Expect = 3.040e-137
Identity = 187/262 (71.37%), Postives = 219/262 (83.59%), Query Frame = 1
Query:    1 VPRYKLIVEYDGGPFVGWQRQPNGPTVQALLEDAIFAMSGERVQVQGAGRTDSGVHALGQVAHFDLANEMAADKVQAALNFHLKPNPIALPSVEIAPAKFHARFSATWRRYRYRILNRRAPPTLDSGHVWHVPARLDLDAMIDAAAALQGHHDFNSFRSTACQAPSSIKTLDLMRVGRDGDEIHIDVGARSFLHNQVRILVGTLRLVGRGQWSRRDVEEALAACDRTRGGPTAPPQGLCLMEVRYDLGGGH--DAEIASDEE 780
            +PRYKL +EYDG PFVGWQRQPNGP+VQA LE+A+FA +GER  VQ AGRTD+GVHA GQV H DL++E   + +++A+NFHLKP P+++ + E AP  FHARFSATWRRYRYRI+NRRAPP LD G +WHVP  LD+ AM +AAA L GHHDFNSFRSTACQ+PS++KTLDL+ V R G+EIH+DVG+RSFLHNQVRILVGTL LVGRGQWSR DVE ALAA DRTR GPTAPP GLCLMEVRY+LG GH  DAE A D++
Sbjct:    1 MPRYKLTIEYDGAPFVGWQRQPNGPSVQAALEEAVFAFAGERPPVQAAGRTDTGVHARGQVVHLDLSSERPVETIRSAINFHLKPQPVSVLTAERAPPGFHARFSATWRRYRYRIINRRAPPALDRGQLWHVPVALDVAAMAEAAAVLVGHHDFNSFRSTACQSPSALKTLDLLEVTRRGEEIHVDVGSRSFLHNQVRILVGTLHLVGRGQWSRGDVEAALAARDRTRAGPTAPPHGLCLMEVRYELGAGHEGDAEEAVDDQ 262          
BLAST of mRNA_P-wetherbeei_contig15693.1.1 vs. uniprot
Match: A0A6A7MEB3_9PROT (tRNA pseudouridine synthase A n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7MEB3_9PROT)

HSP 1 Score: 395 bits (1014), Expect = 6.580e-137
Identity = 193/260 (74.23%), Postives = 211/260 (81.15%), Query Frame = 1
Query:    1 VPRYKLIVEYDGGPFVGWQRQPNGPTVQALLEDAIFAMSGERVQVQGAGRTDSGVHALGQVAHFDLANEMAADKVQAALNFHLKPNPIALPSVEIAPAKFHARFSATWRRYRYRILNRRAPPTLDSGHVWHVPARLDLDAMIDAAAALQGHHDFNSFRSTACQAPSSIKTLDLMRVGRDGDEIHIDVGARSFLHNQVRILVGTLRLVGRGQWSRRDVEEALAACDRTRGGPTAPPQGLCLMEVRYDLGGGHDAEIASDEE 780
            +PRYKL +EYDG PFVGWQRQ NGP++Q  +EDA+FA  GER  V GAGRTD+GVHALGQVAHFDLA E  AD V+AA+NFHLKPNPI +   EI P  FHARFSAT RRYRY ILNRRAPP LD G VWHVP  LD  AM DAA  L G HDFNSFRS ACQA SS+KTLD + V RDGD I IDVGARSFLHNQVRILVGTL+LVGRGQWS RDVE+ALAA DRTR GPTAPPQGLCLM VRYDLG G DA++A D++
Sbjct:    1 MPRYKLTIEYDGAPFVGWQRQDNGPSIQGAIEDAVFAFCGERAAVHGAGRTDTGVHALGQVAHFDLAEEKPADTVRAAVNFHLKPNPIVVTQAEIVPDDFHARFSATARRYRYLILNRRAPPALDRGRVWHVPVPLDDAAMADAARLLIGRHDFNSFRSAACQAASSVKTLDRLGVTRDGDVIRIDVGARSFLHNQVRILVGTLQLVGRGQWSMRDVEDALAARDRTRAGPTAPPQGLCLMAVRYDLGAGKDADVAIDDD 260          
BLAST of mRNA_P-wetherbeei_contig15693.1.1 vs. uniprot
Match: A0A521QJ65_9HYPH (tRNA pseudouridine synthase A n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521QJ65_9HYPH)

HSP 1 Score: 394 bits (1012), Expect = 1.280e-136
Identity = 192/263 (73.00%), Postives = 215/263 (81.75%), Query Frame = 1
Query:    1 VPRYKLIVEYDGGPFVGWQRQPNGPTVQALLEDAIFAMSGERVQVQGAGRTDSGVHALGQVAHFDLANEMAADKVQAALNFHLKPNPIALPSVEIAPAKFHARFSATWRRYRYRILNRRAPPTLDSGHVWHVPARLDLDAMIDAAAALQGHHDFNSFRSTACQAPSSIKTLDLMRVGRDGDEIHIDVGARSFLHNQVRILVGTLRLVGRGQWSRRDVEEALAACDRTRGGPTAPPQGLCLMEVRYDLGGG---HDAEIASDEE 780
            +PRYKL +EYDG PFVGWQRQ NG ++Q  LEDA+FA  GERV V GAGRTD+GVHA GQVAHFD+ +E   D V++ALNFHLKP+PI +   E APA FHARFSATWRRYRYRI+NRRAPP LD G  WHVP  LD  AM DAA+ L GHHDFNSFRSTACQ+PS+IKTLDL+ V R+G+EI IDVGARSFLHNQVRIL GTL+ VGRGQWSRRDVEEALAA DRTR GPTAPPQGLC MEVRYDLG G   +DAE   D++
Sbjct:    1 MPRYKLTIEYDGEPFVGWQRQHNGLSIQGALEDAVFAFCGERVSVIGAGRTDAGVHARGQVAHFDITHEKPTDTVRSALNFHLKPHPIVVVQAEPAPANFHARFSATWRRYRYRIINRRAPPALDRGQFWHVPVPLDAAAMADAASVLVGHHDFNSFRSTACQSPSAIKTLDLLEVSRNGNEITIDVGARSFLHNQVRILAGTLQFVGRGQWSRRDVEEALAARDRTRAGPTAPPQGLCFMEVRYDLGPGRHRNDAEETIDDQ 263          
BLAST of mRNA_P-wetherbeei_contig15693.1.1 vs. uniprot
Match: A0A1H8M522_9PROT (tRNA pseudouridine synthase A n=1 Tax=Rhodospirillales bacterium URHD0017 TaxID=1380357 RepID=A0A1H8M522_9PROT)

HSP 1 Score: 388 bits (997), Expect = 2.550e-134
Identity = 190/260 (73.08%), Postives = 206/260 (79.23%), Query Frame = 1
Query:    1 VPRYKLIVEYDGGPFVGWQRQPNGPTVQALLEDAIFAMSGERVQVQGAGRTDSGVHALGQVAHFDLANEMAADKVQAALNFHLKPNPIALPSVEIAPAKFHARFSATWRRYRYRILNRRAPPTLDSGHVWHVPARLDLDAMIDAAAALQGHHDFNSFRSTACQAPSSIKTLDLMRVGRDGDEIHIDVGARSFLHNQVRILVGTLRLVGRGQWSRRDVEEALAACDRTRGGPTAPPQGLCLMEVRYDLGGGHDAEIASDEE 780
            +PRYKL +EYDG PFVGWQRQ NGP++Q  LEDAIFA  GERV + GAGRTD+GVHAL QVAH DL  E  AD VQAA+NFHLKP PI +   EI P  FHARFSA  RRYRY ILNRRAPP LD G VWHVP  LD  AM DAA  L G HDFNSFRS ACQA SS+KTLD + V R+G+ I IDVGARSFLHNQVRILVGTL+LVGRGQWSR DVE ALAACDRTR GPTAPPQGLCLM VRYDLG G  A+IA D++
Sbjct:    1 MPRYKLTIEYDGAPFVGWQRQDNGPSIQGALEDAIFAFCGERVALHGAGRTDTGVHALAQVAHIDLVGEKPADTVQAAVNFHLKPQPIVVTRTEIVPDDFHARFSAVARRYRYLILNRRAPPALDRGRVWHVPVALDAAAMADAATLLIGRHDFNSFRSAACQAASSVKTLDQLEVTREGELIRIDVGARSFLHNQVRILVGTLQLVGRGQWSRSDVESALAACDRTRAGPTAPPQGLCLMAVRYDLGAGQHADIAVDDD 260          
BLAST of mRNA_P-wetherbeei_contig15693.1.1 vs. uniprot
Match: A0A1E4HS99_9PROT (tRNA pseudouridine synthase A n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1E4HS99_9PROT)

HSP 1 Score: 387 bits (995), Expect = 4.790e-134
Identity = 186/248 (75.00%), Postives = 210/248 (84.68%), Query Frame = 1
Query:    1 VPRYKLIVEYDGGPFVGWQRQPNGPTVQALLEDAIFAMSGERVQVQGAGRTDSGVHALGQVAHFDLANEMAADKVQAALNFHLKPNPIALPSVEIAPAKFHARFSATWRRYRYRILNRRAPPTLDSGHVWHVPARLDLDAMIDAAAALQGHHDFNSFRSTACQAPSSIKTLDLMRVGRDGDEIHIDVGARSFLHNQVRILVGTLRLVGRGQWSRRDVEEALAACDRTRGGPTAPPQGLCLMEVRYDLG 744
            +PRYKL +EYDG PFVGWQRQ NG +VQ  LEDA+FA  GER  V GAGRTD+GVHA GQVAH DL  E +A+ V++ALNFHLKP+P+A+   E A A FHARFSATWRRYRYRILNRRAPP LD G +WHVP  LD++AM DAA+AL GHHDFNSFRST+CQA S++KTLDL+ V R+GDEI +DVGARSFLHNQVRIL GTL+LVGRGQWSRRDVE+ALAA DRTR GPTAPPQGLC MEVRYDLG
Sbjct:    1 MPRYKLTIEYDGEPFVGWQRQENGLSVQGALEDAVFAFCGERAVVVGAGRTDAGVHARGQVAHIDLTGEKSAETVRSALNFHLKPHPVAVVQAEPATADFHARFSATWRRYRYRILNRRAPPALDRGQLWHVPVPLDVEAMADAASALLGHHDFNSFRSTSCQALSALKTLDLLTVSRNGDEITLDVGARSFLHNQVRILAGTLQLVGRGQWSRRDVEQALAARDRTRAGPTAPPQGLCFMEVRYDLG 248          
BLAST of mRNA_P-wetherbeei_contig15693.1.1 vs. uniprot
Match: A0A512NLM3_9HYPH (tRNA pseudouridine synthase A n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512NLM3_9HYPH)

HSP 1 Score: 380 bits (976), Expect = 4.010e-131
Identity = 187/260 (71.92%), Postives = 205/260 (78.85%), Query Frame = 1
Query:    1 VPRYKLIVEYDGGPFVGWQRQPNGPTVQALLEDAIFAMSGERVQVQGAGRTDSGVHALGQVAHFDLANEMAADKVQAALNFHLKPNPIALPSVEIAPAKFHARFSATWRRYRYRILNRRAPPTLDSGHVWHVPARLDLDAMIDAAAALQGHHDFNSFRSTACQAPSSIKTLDLMRVGRDGDEIHIDVGARSFLHNQVRILVGTLRLVGRGQWSRRDVEEALAACDRTRGGPTAPPQGLCLMEVRYDLGGGHDAEIASDEE 780
            +PRYKL +EYDG PFVGWQRQ NGP++Q  LEDA+FA  GE V V GAGRTD+GVHALGQVAH DLA E   D VQAA+NFHLKPNPI +    IAPA FHARFSAT RRYRY ILNRRAPP LD G VWHVP  LD   M +AA  L G HDFNSFRS ACQA S +KTLD + V RDGD I IDVGARSFLHNQVRILVGTL+LVGRGQWS++DV +ALAA DRTR GPTAPPQGLCLM VRYDL     A+IA D++
Sbjct:    1 MPRYKLTIEYDGAPFVGWQRQDNGPSIQGALEDAVFAFCGEHVAVHGAGRTDTGVHALGQVAHLDLAAEKPVDTVQAAVNFHLKPNPIVVTEAAIAPADFHARFSATARRYRYLILNRRAPPALDRGRVWHVPVPLDAATMAEAARLLIGRHDFNSFRSAACQAASPLKTLDQLDVARDGDLIRIDVGARSFLHNQVRILVGTLQLVGRGQWSKQDVADALAARDRTRAGPTAPPQGLCLMAVRYDLAAAKHADIAVDDD 260          
BLAST of mRNA_P-wetherbeei_contig15693.1.1 vs. uniprot
Match: A0A1Q3KKR6_9PROT (tRNA pseudouridine synthase A n=1 Tax=Alphaproteobacteria bacterium 65-37 TaxID=1895711 RepID=A0A1Q3KKR6_9PROT)

HSP 1 Score: 377 bits (969), Expect = 5.180e-130
Identity = 186/267 (69.66%), Postives = 210/267 (78.65%), Query Frame = 1
Query:    1 VPRYKLIVEYDGGPFVGWQRQPNGPTVQALLEDAIFAMSGERVQVQGAGRTDSGVHALGQVAHFDLANEMAADKVQAALNFHLKPNPIALPSVEIAPAKFHARFSATWRRYRYRILNRRAPPTLDSGHVWHVPARLDLDAMIDAAAALQGHHDFNSFRSTACQAPSSIKTLDLMRVGRDGDEIHIDVGARSFLHNQVRILVGTLRLVGRGQWSRRDVEEALAACDRTRGGPTAPPQGLCLMEVRYD-------LGGGHDAEIASDEE 780
            +PRYKL +EYDG PFVGWQRQ  GP+VQA LEDA+FA SGERV V GAGRTDSGVHA GQVAH DLA +   + +++ALNFHLKPNP+A+   E   A FHARFSA WRRYRYRILNRRAPP LD G +WH+   LD  AM DAA  L G HDFNSFRST+CQAPS++KTLDL+ VGRDG+EI I+VG+RSFLHNQVRILVGTL+LVGRGQWSR DVE+ALAA DR R GPTAPPQGLC MEVRY         G   DAE A D++
Sbjct:    1 MPRYKLTLEYDGEPFVGWQRQDTGPSVQAALEDAVFAFSGERVTVHGAGRTDSGVHARGQVAHVDLAEDKPVETIRSALNFHLKPNPVAVLLAEPVAADFHARFSAVWRRYRYRILNRRAPPALDRGQLWHLGVPLDAAAMADAATVLVGRHDFNSFRSTSCQAPSAVKTLDLLEVGRDGEEIRIEVGSRSFLHNQVRILVGTLQLVGRGQWSRADVEQALAARDRARAGPTAPPQGLCFMEVRYGEGRPGSGAGDRDDAEEAVDDQ 267          
BLAST of mRNA_P-wetherbeei_contig15693.1.1 vs. uniprot
Match: A0A1T4NM77_9HYPH (tRNA pseudouridine synthase A n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4NM77_9HYPH)

HSP 1 Score: 376 bits (966), Expect = 1.240e-129
Identity = 185/262 (70.61%), Postives = 209/262 (79.77%), Query Frame = 1
Query:    1 VPRYKLIVEYDGGPFVGWQRQPNGPTVQALLEDAIFAMSGERVQVQGAGRTDSGVHALGQVAHFDLANEMAADKVQAALNFHLKPNPIALPSVEIAPAKFHARFSATWRRYRYRILNRRAPPTLDSGHVWHVPARLDLDAMIDAAAALQGHHDFNSFRSTACQAPSSIKTLDLMRVGRDGDEIHIDVGARSFLHNQVRILVGTLRLVGRGQWSRRDVEEALAACDRTRGGPTAPPQGLCLMEVRYDLGGG--HDAEIASDEE 780
            +PRYK+ VEYDGG FVGWQRQ  GP++QA LEDA+FA +GERV VQGAGRTD+GVHA GQVAHFDL      + ++ AL FHL+P+PI +P+ EIA   FHARFSAT+RRYRYRILNRR+P  LD G VWHVP  LD D+M  AAA L G HDFNSFRS  CQA SSIKTLD++ V RDG+EI IDVGARSFLHNQVRILVGTL+LVGRGQWS+RDVEEAL ACDRTR GPTAPP GLCLMEVRY L      +AE   D+E
Sbjct:    1 MPRYKITVEYDGGSFVGWQRQDTGPSIQAALEDAVFAFTGERVHVQGAGRTDAGVHARGQVAHFDLVKPQPTESIRGALCFHLRPHPIVVPTAEIAAPDFHARFSATYRRYRYRILNRRSPAALDRGQVWHVPVPLDADSMAAAAAVLVGRHDFNSFRSINCQAASSIKTLDMLSVRRDGEEIAIDVGARSFLHNQVRILVGTLQLVGRGQWSKRDVEEALRACDRTRAGPTAPPVGLCLMEVRYGLAADDRRNAEDLVDDE 262          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15693.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3AEM0_9PROT5.860e-17491.60tRNA pseudouridine synthase A n=2 Tax=Alphaproteob... [more]
A0A521LCC1_9HYPH1.250e-13875.48tRNA pseudouridine synthase A n=1 Tax=Reyranella s... [more]
A0A259MUB9_9PROT3.040e-13771.37tRNA pseudouridine synthase A n=4 Tax=Alphaproteob... [more]
A0A6A7MEB3_9PROT6.580e-13774.23tRNA pseudouridine synthase A n=1 Tax=Rhodospirill... [more]
A0A521QJ65_9HYPH1.280e-13673.00tRNA pseudouridine synthase A n=1 Tax=Reyranella s... [more]
A0A1H8M522_9PROT2.550e-13473.08tRNA pseudouridine synthase A n=1 Tax=Rhodospirill... [more]
A0A1E4HS99_9PROT4.790e-13475.00tRNA pseudouridine synthase A n=2 Tax=Alphaproteob... [more]
A0A512NLM3_9HYPH4.010e-13171.92tRNA pseudouridine synthase A n=1 Tax=Reyranella s... [more]
A0A1Q3KKR6_9PROT5.180e-13069.66tRNA pseudouridine synthase A n=1 Tax=Alphaproteob... [more]
A0A1T4NM77_9HYPH1.240e-12970.61tRNA pseudouridine synthase A n=1 Tax=Enhydrobacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15693contigP-wetherbeei_contig15693:354..1136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1205680.CAKO01000038_gene1414
Preferred nametruA
PFAMsPseudoU_synth_1
Model size783
Max annot lvl204441|Rhodospirillales
KEGG koko:K06173
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.36e-135
EggNOG OGsCOG0101@1|root,COG0101@2|Bacteria,1MUYI@1224|Proteobacteria,2TR57@28211|Alphaproteobacteria,2JQQ7@204441|Rhodospirillales
EC5.4.99.12
DescriptionFormation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
Cds size783
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186064.2939286-CDS-P-wetherbeei_contig15693:353..11361683186064.2939286-CDS-P-wetherbeei_contig15693:353..1136Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15693 354..1136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15693.1.1prot_P-wetherbeei_contig15693.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15693 354..1136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15693.1.1

>prot_P-wetherbeei_contig15693.1.1 ID=prot_P-wetherbeei_contig15693.1.1|Name=mRNA_P-wetherbeei_contig15693.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=261bp
VPRYKLIVEYDGGPFVGWQRQPNGPTVQALLEDAIFAMSGERVQVQGAGR
TDSGVHALGQVAHFDLANEMAADKVQAALNFHLKPNPIALPSVEIAPAKF
HARFSATWRRYRYRILNRRAPPTLDSGHVWHVPARLDLDAMIDAAAALQG
HHDFNSFRSTACQAPSSIKTLDLMRVGRDGDEIHIDVGARSFLHNQVRIL
VGTLRLVGRGQWSRRDVEEALAACDRTRGGPTAPPQGLCLMEVRYDLGGG
HDAEIASDEE*
back to top

mRNA from alignment at P-wetherbeei_contig15693:354..1136+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15693.1.1 ID=mRNA_P-wetherbeei_contig15693.1.1|Name=mRNA_P-wetherbeei_contig15693.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=783bp|location=Sequence derived from alignment at P-wetherbeei_contig15693:354..1136+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCCGCGTTACAAGCTCATCGTCGAATACGATGGCGGGCCTTTCGTGGG CTGGCAGCGCCAACCCAACGGCCCGACGGTCCAGGCCCTGCTGGAAGACG CGATCTTCGCGATGAGCGGTGAGCGCGTGCAGGTGCAGGGCGCGGGCCGC ACCGATTCGGGCGTCCATGCGCTGGGCCAGGTCGCGCATTTCGATCTCGC CAACGAGATGGCAGCCGACAAGGTGCAGGCCGCGCTCAATTTCCATCTCA AGCCAAACCCGATCGCGCTGCCCTCGGTTGAAATCGCGCCGGCGAAATTT CATGCGCGCTTCTCGGCGACCTGGCGGCGCTATCGCTACCGCATCCTCAA CCGCCGAGCGCCGCCGACCCTCGACAGCGGCCATGTCTGGCACGTCCCTG CCCGGCTCGACCTCGACGCCATGATCGACGCCGCGGCGGCGCTGCAGGGC CATCATGACTTCAACAGCTTCCGATCGACCGCCTGCCAGGCGCCGTCGTC GATCAAGACGCTCGACCTGATGCGTGTCGGCCGCGACGGCGACGAGATCC ACATCGATGTCGGCGCGCGGTCGTTCCTGCACAACCAGGTGCGCATTCTG GTCGGAACGCTCCGGCTTGTCGGTCGCGGCCAATGGTCGAGACGCGACGT CGAGGAGGCTCTGGCGGCCTGCGACCGCACCCGCGGCGGCCCCACTGCGC CACCGCAGGGCCTCTGCCTCATGGAAGTGCGTTACGACCTAGGCGGCGGC CACGACGCCGAGATAGCGAGCGATGAGGAATGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15693:354..1136+

>mRNA_P-wetherbeei_contig15693.1.1 ID=mRNA_P-wetherbeei_contig15693.1.1|Name=mRNA_P-wetherbeei_contig15693.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=783bp|location=Sequence derived from alignment at P-wetherbeei_contig15693:354..1136+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCCGCGTTACAAGCTCATCGTCGAATACGATGGCGGGCCTTTCGTGGG
CTGGCAGCGCCAACCCAACGGCCCGACGGTCCAGGCCCTGCTGGAAGACG
CGATCTTCGCGATGAGCGGTGAGCGCGTGCAGGTGCAGGGCGCGGGCCGC
ACCGATTCGGGCGTCCATGCGCTGGGCCAGGTCGCGCATTTCGATCTCGC
CAACGAGATGGCAGCCGACAAGGTGCAGGCCGCGCTCAATTTCCATCTCA
AGCCAAACCCGATCGCGCTGCCCTCGGTTGAAATCGCGCCGGCGAAATTT
CATGCGCGCTTCTCGGCGACCTGGCGGCGCTATCGCTACCGCATCCTCAA
CCGCCGAGCGCCGCCGACCCTCGACAGCGGCCATGTCTGGCACGTCCCTG
CCCGGCTCGACCTCGACGCCATGATCGACGCCGCGGCGGCGCTGCAGGGC
CATCATGACTTCAACAGCTTCCGATCGACCGCCTGCCAGGCGCCGTCGTC
GATCAAGACGCTCGACCTGATGCGTGTCGGCCGCGACGGCGACGAGATCC
ACATCGATGTCGGCGCGCGGTCGTTCCTGCACAACCAGGTGCGCATTCTG
GTCGGAACGCTCCGGCTTGTCGGTCGCGGCCAATGGTCGAGACGCGACGT
CGAGGAGGCTCTGGCGGCCTGCGACCGCACCCGCGGCGGCCCCACTGCGC
CACCGCAGGGCCTCTGCCTCATGGAAGTGCGTTACGACCTAGGCGGCGGC
CACGACGCCGAGATAGCGAGCGATGAGGAATGA
back to top