mRNA_P-wetherbeei_contig10446.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10446.1.1
Unique NamemRNA_P-wetherbeei_contig10446.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10446.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10446contigP-wetherbeei_contig10446:600..1464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size865
Hectar predicted targeting categoryother localisation
Exons1
Cds size795
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185869.6886878-UTR-P-wetherbeei_contig10446:599..6541683185869.6886878-UTR-P-wetherbeei_contig10446:599..654Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10446 600..654 +
1683185869.7120404-UTR-P-wetherbeei_contig10446:1449..14641683185869.7120404-UTR-P-wetherbeei_contig10446:1449..1464Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10446 1450..1464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185869.701264-CDS-P-wetherbeei_contig10446:654..14491683185869.701264-CDS-P-wetherbeei_contig10446:654..1449Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10446 655..1449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10446.1.1prot_P-wetherbeei_contig10446.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10446 655..1449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10446.1.1

>prot_P-wetherbeei_contig10446.1.1 ID=prot_P-wetherbeei_contig10446.1.1|Name=mRNA_P-wetherbeei_contig10446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=265bp
MAVEVTAAATTTVSTAKKAGGNADDAGASVVSGDGVYDGDDDGNDDKDGG
DNRDNDAKRGSSSGSGGNSSGAGSGEGDSMTASKPSVAAGDGGAGGGSSD
GCYSGDGTRNAVSIGDGGTGGSFGAAGDDARRWGSLIGTGIGNGWVGPPL
SDEHVAALAESRLALRWTQLLHRRLADRCNDLAARAARWGLRIAEGLQTT
SVGVGVRVGGRGGSVLLPQGGESTVGGVGSPSTAAAGGRSTMLAKGGLLS
ESTHRTTYLMRGVN*
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mRNA from alignment at P-wetherbeei_contig10446:600..1464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10446.1.1 ID=mRNA_P-wetherbeei_contig10446.1.1|Name=mRNA_P-wetherbeei_contig10446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=865bp|location=Sequence derived from alignment at P-wetherbeei_contig10446:600..1464+ (Phaeothamnion wetherbeei SAG_119_79)
CGGTCGTTTAGAGGAGTTAGGCTGTTGGGTGACGCTGGAGGATGCCCGGG
AAACCATGGCGGTGGAGGTGACAGCGGCAGCGACGACGACGGTGTCGACG
GCGAAGAAAGCAGGCGGCAACGCCGACGATGCGGGGGCGTCGGTGGTTAG
CGGAGACGGCGTTTACGACGGCGATGACGACGGCAATGACGACAAGGACG
GCGGCGACAACCGTGACAACGACGCAAAAAGGGGCTCTTCCTCGGGCAGC
GGCGGAAACAGCAGCGGGGCCGGCAGCGGTGAAGGCGACAGCATGACCGC
CTCCAAACCTAGCGTTGCGGCTGGCGACGGCGGCGCCGGTGGCGGCAGCA
GCGATGGCTGCTATAGCGGCGATGGCACCCGCAACGCTGTCAGCATCGGC
GACGGTGGAACGGGCGGCTCCTTCGGCGCGGCGGGCGACGACGCGCGACG
CTGGGGCAGCCTCATCGGCACCGGCATCGGCAACGGGTGGGTTGGGCCAC
CGCTGTCGGACGAACACGTCGCAGCGCTGGCTGAGTCCCGCCTAGCTCTG
CGTTGGACGCAGCTGCTGCACCGCCGGCTGGCTGACCGCTGCAACGACTT
GGCGGCGCGGGCGGCGCGGTGGGGGCTGCGCATCGCTGAGGGCCTCCAGA
CAACGAGTGTCGGCGTCGGCGTTAGAGTCGGCGGTCGCGGCGGCAGCGTC
TTGTTGCCGCAAGGTGGCGAAAGCACCGTAGGCGGAGTAGGATCCCCTTC
GACCGCGGCGGCGGGCGGAAGGAGCACCATGCTGGCAAAAGGAGGATTGC
TGAGCGAGAGCACGCACCGTACCACATATCTCATGCGCGGCGTCAACTGA
TAGTCTAAAGTCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10446:600..1464+

>mRNA_P-wetherbeei_contig10446.1.1 ID=mRNA_P-wetherbeei_contig10446.1.1|Name=mRNA_P-wetherbeei_contig10446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=795bp|location=Sequence derived from alignment at P-wetherbeei_contig10446:600..1464+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGTGGAGGTGACAGCGGCAGCGACGACGACGGTGTCGACGGCGAA
GAAAGCAGGCGGCAACGCCGACGATGCGGGGGCGTCGGTGGTTAGCGGAG
ACGGCGTTTACGACGGCGATGACGACGGCAATGACGACAAGGACGGCGGC
GACAACCGTGACAACGACGCAAAAAGGGGCTCTTCCTCGGGCAGCGGCGG
AAACAGCAGCGGGGCCGGCAGCGGTGAAGGCGACAGCATGACCGCCTCCA
AACCTAGCGTTGCGGCTGGCGACGGCGGCGCCGGTGGCGGCAGCAGCGAT
GGCTGCTATAGCGGCGATGGCACCCGCAACGCTGTCAGCATCGGCGACGG
TGGAACGGGCGGCTCCTTCGGCGCGGCGGGCGACGACGCGCGACGCTGGG
GCAGCCTCATCGGCACCGGCATCGGCAACGGGTGGGTTGGGCCACCGCTG
TCGGACGAACACGTCGCAGCGCTGGCTGAGTCCCGCCTAGCTCTGCGTTG
GACGCAGCTGCTGCACCGCCGGCTGGCTGACCGCTGCAACGACTTGGCGG
CGCGGGCGGCGCGGTGGGGGCTGCGCATCGCTGAGGGCCTCCAGACAACG
AGTGTCGGCGTCGGCGTTAGAGTCGGCGGTCGCGGCGGCAGCGTCTTGTT
GCCGCAAGGTGGCGAAAGCACCGTAGGCGGAGTAGGATCCCCTTCGACCG
CGGCGGCGGGCGGAAGGAGCACCATGCTGGCAAAAGGAGGATTGCTGAGC
GAGAGCACGCACCGTACCACATATCTCATGCGCGGCGTCAACTGA
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