mRNA_P-wetherbeei_contig15568.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15568.1.1
Unique NamemRNA_P-wetherbeei_contig15568.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15568.1.1 vs. uniprot
Match: D7FNF5_ECTSI (Possible ferredoxin (2Fe-2S) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNF5_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 8.190e-48
Identity = 77/125 (61.60%), Postives = 100/125 (80.00%), Query Frame = 1
Query:    1 SFFRGTRAALEELAGAAAAPTTVAVTVRQAGKPDLMLAAPAGANLRDILVGANINVYRSVSRWTNCKGRQLCGTCIVAVDQGADGCTVQSVDERVTLGNSPPTHRLSCVTNVYDDVSVTVLPPLG 375
            +FFRG+   L+++ GA A P  + VTV+Q GKP+L L AP+GANLRD L    INVY+SV+RWTNCKG+QLCGTCIVA+D+G +  T++SVDE  TL ++PP +RLSCVTN+YDDV+VTV PP+G
Sbjct:  203 TFFRGSTEELKKVVGAEAPPAEITVTVKQDGKPELALTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVAIDEGLESTTIRSVDESSTLRDNPPNYRLSCVTNMYDDVTVTVFPPVG 327          
BLAST of mRNA_P-wetherbeei_contig15568.1.1 vs. uniprot
Match: A0A835Z6S1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S1_9STRA)

HSP 1 Score: 154 bits (389), Expect = 6.540e-44
Identity = 75/127 (59.06%), Postives = 96/127 (75.59%), Query Frame = 1
Query:    1 SFFRGTRAALEELAGAA--AAPTTVAVTVRQAGKPDLMLAAPAGANLRDILVGANINVYRSVSRWTNCKGRQLCGTCIVAVDQGADGCTVQSVDERVTLGNSPPTHRLSCVTNVYDDVSVTVLPPLG 375
            +FFRGT A L  LAG    A      +TV+Q GK DL++   AGANLRD+LVG  +NVY+S++RWTNCKGRQLCGTCIV V   +D CT++SVDER TL ++PP++RLSCVTNVY D++V + PP+G
Sbjct:  160 AFFRGTTAELRALAGGGDGADAERARITVQQPGKADLVIECAAGANLRDVLVGNGVNVYQSLTRWTNCKGRQLCGTCIVDVAGASDACTIKSVDERSTLRSNPPSYRLSCVTNVYKDITVQIFPPIG 286          
BLAST of mRNA_P-wetherbeei_contig15568.1.1 vs. uniprot
Match: A0A6S9LXT1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LXT1_HETAK)

HSP 1 Score: 144 bits (363), Expect = 5.070e-40
Identity = 67/126 (53.17%), Postives = 96/126 (76.19%), Query Frame = 1
Query:    1 SFFRGTRAALEELAGAAAAPTTVAVTVRQAGK-PDLMLAAPAGANLRDILVGANINVYRSVSRWTNCKGRQLCGTCIVAVDQGADGCTVQSVDERVTLGNSPPTHRLSCVTNVYDDVSVTVLPPLG 375
            +FFRGTR  L+E    +  P+T+ +TVR+ G+ P+ ++ APAGANLRD+L+  NINVY+S++RWTNCKG+QLCGTCIV V +G D  + + +DE  TL ++PPT+RLSCVTN++ D++V   P +G
Sbjct:  160 TFFRGTREELQEATVGSTGPSTITLTVREKGEGPEKIITAPAGANLRDVLIANNINVYQSITRWTNCKGKQLCGTCIVNVAEGFDNTSRRGIDEASTLRDNPPTYRLSCVTNMHGDLTVETYPEIG 285          
BLAST of mRNA_P-wetherbeei_contig15568.1.1 vs. uniprot
Match: A0A8J5X6J6_DIALT (PDZ domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X6J6_DIALT)

HSP 1 Score: 139 bits (349), Expect = 3.420e-38
Identity = 67/125 (53.60%), Postives = 88/125 (70.40%), Query Frame = 1
Query:    1 SFFRGTRAALEELAGAAAAPTTVAVTVRQAGKPDLMLAAPAGANLRDILVGANINVYRSVSRWTNCKGRQLCGTCIVAVDQGADGCTVQSVDERVTLGNSPPTHRLSCVTNVYDDVSVTVLPPLG 375
            + FRG+RA L+   G AA P+TV + V Q G PD++  A AG NLRD LV   INVYRS +RWTNC G+QLCG+CIV V  G D C+ +S+DE  TL  +PP++RLSC+T V+ D++V V  P+G
Sbjct:  136 TLFRGSRAELQREVGFAAGPSTVTIRVVQQGLPDVVFTAKAGCNLRDELVARKINVYRSFTRWTNCSGKQLCGSCIVDVTAGLDACSRRSIDESSTLRENPPSYRLSCITQVHGDITVAVQTPVG 260          
BLAST of mRNA_P-wetherbeei_contig15568.1.1 vs. uniprot
Match: A0A7S3TKK5_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TKK5_9SPIT)

HSP 1 Score: 135 bits (339), Expect = 5.890e-37
Identity = 62/124 (50.00%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    4 FFRGTRAALEELAGAAAAPTTVAVTVRQAGKPDLMLAAPAGANLRDILVGANINVYRSVSRWTNCKGRQLCGTCIVAVDQGADGCTVQSVDERVTLGNSPPTHRLSCVTNVYDDVSVTVLPPLG 375
            FFRG+R AL+ L      P T+ +T+++  +PD     P G NLRD L+   INVY+SV+RWTNC G+QLCGTCIV V +G +GCT +S+DE  TL  +P T++L+C+TN+Y DV+V ++P +G
Sbjct:  113 FFRGSREALQALCAVEQGPATITLTLQRKDQPDEKFQLPYGCNLRDELISRGINVYQSVTRWTNCNGKQLCGTCIVDVVEGIEGCTRRSLDEASTLRENPETYKLACITNLYGDVTVKLMPKVG 236          
BLAST of mRNA_P-wetherbeei_contig15568.1.1 vs. uniprot
Match: A0A7S2XYE9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYE9_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.960e-33
Identity = 55/106 (51.89%), Postives = 79/106 (74.53%), Query Frame = 1
Query:   58 PTTVAVTVRQAGKPDLMLAAPAGANLRDILVGANINVYRSVSRWTNCKGRQLCGTCIVAVDQGADGCTVQSVDERVTLGNSPPTHRLSCVTNVYDDVSVTVLPPLG 375
            PTT  +TV++  +PDL L AP G N+RD+++   INVY+S++RWTNC G+QLCGTCIV V +G +  T++SVDE   L  +PP++RLSCVT++Y D +V + P +G
Sbjct:  198 PTTAKITVQRKDQPDLELEAPIGKNIRDLMIENKINVYQSLTRWTNCNGKQLCGTCIVEVTEGLNNLTLKSVDEATVLRENPPSYRLSCVTDIYGDATVKIFPAVG 303          
BLAST of mRNA_P-wetherbeei_contig15568.1.1 vs. uniprot
Match: A0A7R9ZQ23_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQ23_9STRA)

HSP 1 Score: 124 bits (310), Expect = 4.350e-32
Identity = 68/138 (49.28%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    4 FFRGTRAALEELA----GAAAAPTTVAVTVRQ-AGKPD---LMLAAPAGANLRDILVGANINVYRSVSRWTNCKGRQLCGTCIVAVDQGADGCTVQSVDERVTLGNSPPTHRLSCVTNVYDDVSVTVLPPLGPVAGGR 393
            FFRGT+  L+E      G    P T+AVTV Q  G  D   + L APAG N+R +LV   INVY+SV+RWTNCKG+QLCGTCIV + +GA+G   +S+DE  TL  +P  +R+SCVT  Y D++V   PP+ P    R
Sbjct:  156 FFRGTKDELKEACAGDGGVTKDPETIAVTVVQNKGAKDERTVQLTAPAGVNVRQLLVDNGINVYQSVTRWTNCKGKQLCGTCIVNIAEGANGTNRKSMDEESTLRENPEGYRISCVTFAYGDITVETFPPINPAQWTR 293          
BLAST of mRNA_P-wetherbeei_contig15568.1.1 vs. uniprot
Match: A0A7S2D1Y7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1Y7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.120e-29
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 1
Query:   64 TVAVTVRQAGKPDLMLAAPAGANLRDILVGANINVYRSVSRWTNCKGRQLCGTCIVAVDQGADGCTVQSVDERVTLGNSPPTHRLSCVTNVYDDVSVTVLPPLG 375
            TV +TVRQAGK D ++ AP G+NLRD+L+  N+ VYR  +R  NC G+QLCGTCIV V  G + C+ +S+DE  TL  +PP++RLSCVT+VY D++V V   +G
Sbjct:  186 TVDITVRQAGKKDRVITAPMGSNLRDVLMANNVQVYRQAARILNCSGKQLCGTCIVDVT-GEEWCSRRSIDEASTLRENPPSYRLSCVTDVYGDITVEVQTAIG 288          
BLAST of mRNA_P-wetherbeei_contig15568.1.1 vs. uniprot
Match: A0A7S2A528_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A528_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.500e-28
Identity = 65/134 (48.51%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    4 FFRGTRAALEELAGAAAAPT-------TVAVTVRQ----AGKPDLMLAAPAGANLRDILVGANINVYRSVSRWTNCKGRQLCGTCIVAVDQGADGCTVQSVDERVTLGNSPPTHRLSCVTNVYDDVSVTVLPPL 372
            FFRGT+   EEL  A A          T+ +TV Q      K    + AP GAN+R  LV   INVY+S++RWTNCKG+QLCGTCIV V +G      +S+DE  TL  +P T+RLSCVT  YDDV+V   PP+
Sbjct:  106 FFRGTK---EELKAACAGSNNSTPEKETITITVIQNNDSKNKITKTITAPVGANIRQTLVDEGINVYQSLTRWTNCKGKQLCGTCIVNVKEGGMNTNRKSMDEASTLRENPDTYRLSCVTFAYDDVTVETFPPI 236          
BLAST of mRNA_P-wetherbeei_contig15568.1.1 vs. uniprot
Match: R1END6_EMIHU (2Fe-2S ferredoxin-type domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1END6_EMIHU)

HSP 1 Score: 108 bits (269), Expect = 2.470e-28
Identity = 46/81 (56.79%), Postives = 63/81 (77.78%), Query Frame = 1
Query:  124 GANLRDILVGANINVYRSVSRWTNCKGRQLCGTCIVAVDQGADGCTVQSVDERVTLGNSPPTHRLSCVTNVYDDVSVTVLP 366
            G NLRD LV   INVY+S++RWTNC G+QLCGTCIV V +G + CT +S+DE  TL  +PPT++L+C+TN+Y D +V ++P
Sbjct:    1 GCNLRDELVKRKINVYQSLTRWTNCNGKQLCGTCIVDVPEGVESCTRRSLDEASTLRENPPTYKLACITNLYGDATVKLMP 81          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15568.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNF5_ECTSI8.190e-4861.60Possible ferredoxin (2Fe-2S) n=2 Tax=Ectocarpus Ta... [more]
A0A835Z6S1_9STRA6.540e-4459.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9LXT1_HETAK5.070e-4053.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J5X6J6_DIALT3.420e-3853.60PDZ domain-containing protein n=2 Tax=Diacronema l... [more]
A0A7S3TKK5_9SPIT5.890e-3750.00Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S2XYE9_9STRA3.960e-3351.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9ZQ23_9STRA4.350e-3249.28Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2D1Y7_9STRA4.120e-2953.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2A528_9STRA1.500e-2848.51Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
R1END6_EMIHU2.470e-2856.792Fe-2S ferredoxin-type domain-containing protein (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15568contigP-wetherbeei_contig15568:1201..1596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FNF5
PFAMsFer2
Model size396
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.34e-48
EggNOG OGsCOG0633@1|root,2S5MT@2759|Eukaryota
Description2Fe-2S iron-sulfur cluster binding domain
Cds size396
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186060.2945821-CDS-P-wetherbeei_contig15568:1200..15961683186060.2945821-CDS-P-wetherbeei_contig15568:1200..1596Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15568 1201..1596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15568.1.1prot_P-wetherbeei_contig15568.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15568 1201..1596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15568.1.1

>prot_P-wetherbeei_contig15568.1.1 ID=prot_P-wetherbeei_contig15568.1.1|Name=mRNA_P-wetherbeei_contig15568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
SFFRGTRAALEELAGAAAAPTTVAVTVRQAGKPDLMLAAPAGANLRDILV
GANINVYRSVSRWTNCKGRQLCGTCIVAVDQGADGCTVQSVDERVTLGNS
PPTHRLSCVTNVYDDVSVTVLPPLGPVAGGR*
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mRNA from alignment at P-wetherbeei_contig15568:1201..1596-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15568.1.1 ID=mRNA_P-wetherbeei_contig15568.1.1|Name=mRNA_P-wetherbeei_contig15568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig15568:1201..1596- (Phaeothamnion wetherbeei SAG_119_79)
TCCTTCTTTCGTGGTACGCGCGCCGCGCTGGAGGAGCTCGCAGGTGCGGC CGCTGCGCCGACGACCGTCGCTGTGACGGTACGCCAGGCGGGCAAGCCCG ACCTGATGCTGGCGGCACCCGCTGGCGCCAACCTGCGGGACATTTTGGTC GGCGCCAACATCAACGTCTACCGGTCGGTGTCGCGCTGGACGAATTGCAA GGGGAGGCAGCTGTGCGGCACGTGCATCGTCGCCGTCGACCAAGGCGCCG ATGGCTGCACCGTGCAGAGCGTCGACGAGCGGGTGACGCTCGGCAACAGT CCGCCGACGCACCGGCTGTCATGCGTCACCAATGTCTATGACGACGTCTC CGTCACGGTGCTGCCGCCCCTGGGCCCTGTCGCAGGGGGCCGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15568:1201..1596-

>mRNA_P-wetherbeei_contig15568.1.1 ID=mRNA_P-wetherbeei_contig15568.1.1|Name=mRNA_P-wetherbeei_contig15568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig15568:1201..1596- (Phaeothamnion wetherbeei SAG_119_79)
TCCTTCTTTCGTGGTACGCGCGCCGCGCTGGAGGAGCTCGCAGGTGCGGC
CGCTGCGCCGACGACCGTCGCTGTGACGGTACGCCAGGCGGGCAAGCCCG
ACCTGATGCTGGCGGCACCCGCTGGCGCCAACCTGCGGGACATTTTGGTC
GGCGCCAACATCAACGTCTACCGGTCGGTGTCGCGCTGGACGAATTGCAA
GGGGAGGCAGCTGTGCGGCACGTGCATCGTCGCCGTCGACCAAGGCGCCG
ATGGCTGCACCGTGCAGAGCGTCGACGAGCGGGTGACGCTCGGCAACAGT
CCGCCGACGCACCGGCTGTCATGCGTCACCAATGTCTATGACGACGTCTC
CGTCACGGTGCTGCCGCCCCTGGGCCCTGTCGCAGGGGGCCGATGA
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