mRNA_P-wetherbeei_contig10032.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10032.1.3
Unique NamemRNA_P-wetherbeei_contig10032.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10032.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10032contigP-wetherbeei_contig10032:503..2421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1635
Hectar predicted targeting categoryother localisation
Exons2
Cds size1413
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185850.8840156-UTR-P-wetherbeei_contig10032:502..7221683185850.8840156-UTR-P-wetherbeei_contig10032:502..722Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10032 503..722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185850.8983777-CDS-P-wetherbeei_contig10032:722..9411683185850.8983777-CDS-P-wetherbeei_contig10032:722..941Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10032 723..941 +
1683185850.9075766-CDS-P-wetherbeei_contig10032:1227..24211683185850.9075766-CDS-P-wetherbeei_contig10032:1227..2421Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10032 1228..2421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10032.1.3prot_P-wetherbeei_contig10032.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10032 723..2421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10032.1.3

>prot_P-wetherbeei_contig10032.1.3 ID=prot_P-wetherbeei_contig10032.1.3|Name=mRNA_P-wetherbeei_contig10032.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=471bp
MSYDALLPATKRHRSEPEVDTVVLARCRTRGGCMWPARLCSQEEVAQRLD
LGLDIDRNVRPQESCLVVFLAEGAHHYFSWVPKSHVADFTPNSTSRRKSG
REWLDFKVAEAWATRLMELKAELQAEAAAKLAAKVRAKAAAKAAKAAKAA
AEAQAVKAAAESQAAKAAAAAEAQAAAQPALPASPLLSLPLQPPPAAAPS
PALSPSPPSPPTASLPAAAVPAAALESGARGSASGVVAGGAGDSPGGSGA
AAAASASDGTQAAAAGADDALGAFFAAAGKTPSLEPPPASEEAAGTSGNG
NGGGGGESPQMPGRSSDSRLASLLLAASGSDLGVDDEGNGGGGGDGGAGA
ADGQLPDIYAVRAGEAGEIAAGAISKASAVAARYTAAAGGDAMDTENDPP
APLPLQSGDEFATAGGDAAILAHGTAAEEGATVMDMTALATAAGAADDSA
MEPSEETVPAVQPPLPAALAA
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mRNA from alignment at P-wetherbeei_contig10032:503..2421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10032.1.3 ID=mRNA_P-wetherbeei_contig10032.1.3|Name=mRNA_P-wetherbeei_contig10032.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1919bp|location=Sequence derived from alignment at P-wetherbeei_contig10032:503..2421+ (Phaeothamnion wetherbeei SAG_119_79)
GCTTCCTTCGCTTGCGCACGTCTCCCGTTCGTAGTGGAACACCAGACCAG
CGAGTAGAGGAATGTTTCGAGAAAGAGGCGGAAAGCAAGTGTGAAAAGAT
TTTTGCGAGTTTCCCTTAGGCATTCAGCCCCTCTCACTCATGTCTCTCGC
TCGGTCTTGAGCGCATTCCTAAAGTTGTATCGCATTCCCTTTCGTCCAAC
GCACCTCCTCCTCTTCTCAGATGTCGTACGATGCACTCCTGCCGGCCACG
AAGCGCCACAGGAGCGAGCCGGAGGTGGACACCGTCGTCCTGGCCCGATG
CCGGACGCGGGGCGGCTGCATGTGGCCGGCGAGACTCTGCAGCCAAGAAG
AGGTGGCGCAGCGCCTCGACCTCGGCCTGGACATCGACAGGAACGTTCGG
CCGCAGGAGAGCTGCCTCGTCGTCTTCTTGGCGGAAGGGGTGCGTTGCCG
CCGCCATCACAGATGATCGGGCTCGCGGTTTTCCTTTTCGCGCTTCATGA
TCAAGTTCGGTTTGCCCCTCTGGACTTCTATCGGCATAAACGGCACTCCA
GAAAAAGCGGCTGCTGTTCGAATCACTTTTCCTAGCAACAGCCTGTTGCG
ACGCACACGCTTGACTTGCTTGATGTCCTATCAACCCCTAGGCACCGCTT
CTCTGCCGAATGTTGATCCGATCAACCCGATTTGCTATCTTACAACTCCT
ACGGCCACTCCACCCCGCCCCGCAGGCGCACCATTACTTCAGCTGGGTAC
CAAAAAGCCACGTCGCCGACTTCACCCCCAATTCGACCAGCCGCCGCAAG
TCCGGCCGTGAGTGGCTTGACTTCAAAGTGGCAGAGGCATGGGCGACCCG
CCTGATGGAGCTCAAGGCGGAACTGCAGGCGGAGGCTGCGGCGAAGCTGG
CGGCGAAGGTGAGGGCGAAGGCGGCGGCCAAGGCGGCGAAGGCAGCGAAA
GCAGCAGCGGAGGCTCAGGCGGTGAAAGCGGCGGCGGAGTCGCAAGCGGC
GAAGGCGGCGGCGGCGGCGGAGGCTCAGGCGGCCGCACAACCTGCGCTGC
CAGCTTCGCCGCTGCTGTCGTTACCACTGCAACCGCCGCCAGCGGCGGCA
CCATCGCCTGCACTGTCGCCGTCGCCGCCGTCACCGCCGACAGCGTCCCT
GCCGGCCGCAGCCGTCCCGGCCGCGGCACTGGAGAGCGGTGCCAGAGGCA
GCGCCTCTGGAGTTGTAGCAGGTGGGGCTGGAGACAGTCCTGGCGGTAGC
GGGGCCGCCGCTGCTGCGAGCGCATCTGACGGCACTCAGGCAGCAGCGGC
GGGTGCGGACGATGCATTGGGGGCCTTCTTTGCAGCAGCCGGCAAGACTC
CGTCTTTGGAACCGCCGCCCGCCTCGGAAGAAGCCGCCGGCACAAGCGGC
AACGGCAACGGTGGCGGCGGCGGTGAGTCGCCCCAGATGCCAGGCCGCTC
GTCTGACTCTCGGCTGGCCAGCTTGCTTCTGGCGGCGTCGGGCTCCGATC
TTGGCGTAGATGATGAGGGCAACGGCGGCGGCGGTGGCGACGGCGGAGCG
GGCGCCGCAGATGGGCAGCTGCCAGATATCTATGCGGTGCGGGCCGGCGA
AGCCGGCGAAATCGCTGCGGGAGCGATTAGCAAGGCGAGCGCGGTGGCGG
CTCGCTACACGGCGGCAGCGGGGGGCGATGCCATGGACACGGAGAACGAC
CCGCCGGCGCCGTTGCCTCTCCAAAGCGGCGACGAATTCGCCACGGCAGG
CGGAGATGCAGCAATATTGGCGCACGGGACGGCAGCAGAGGAGGGAGCCA
CAGTCATGGATATGACGGCTTTAGCGACTGCAGCTGGAGCCGCAGACGAC
AGCGCAATGGAACCGTCAGAGGAAACAGTCCCGGCGGTGCAGCCACCGTT
GCCAGCGGCGCTAGCAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10032:503..2421+

>mRNA_P-wetherbeei_contig10032.1.3 ID=mRNA_P-wetherbeei_contig10032.1.3|Name=mRNA_P-wetherbeei_contig10032.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1413bp|location=Sequence derived from alignment at P-wetherbeei_contig10032:503..2421+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTACGATGCACTCCTGCCGGCCACGAAGCGCCACAGGAGCGAGCC
GGAGGTGGACACCGTCGTCCTGGCCCGATGCCGGACGCGGGGCGGCTGCA
TGTGGCCGGCGAGACTCTGCAGCCAAGAAGAGGTGGCGCAGCGCCTCGAC
CTCGGCCTGGACATCGACAGGAACGTTCGGCCGCAGGAGAGCTGCCTCGT
CGTCTTCTTGGCGGAAGGGGCGCACCATTACTTCAGCTGGGTACCAAAAA
GCCACGTCGCCGACTTCACCCCCAATTCGACCAGCCGCCGCAAGTCCGGC
CGTGAGTGGCTTGACTTCAAAGTGGCAGAGGCATGGGCGACCCGCCTGAT
GGAGCTCAAGGCGGAACTGCAGGCGGAGGCTGCGGCGAAGCTGGCGGCGA
AGGTGAGGGCGAAGGCGGCGGCCAAGGCGGCGAAGGCAGCGAAAGCAGCA
GCGGAGGCTCAGGCGGTGAAAGCGGCGGCGGAGTCGCAAGCGGCGAAGGC
GGCGGCGGCGGCGGAGGCTCAGGCGGCCGCACAACCTGCGCTGCCAGCTT
CGCCGCTGCTGTCGTTACCACTGCAACCGCCGCCAGCGGCGGCACCATCG
CCTGCACTGTCGCCGTCGCCGCCGTCACCGCCGACAGCGTCCCTGCCGGC
CGCAGCCGTCCCGGCCGCGGCACTGGAGAGCGGTGCCAGAGGCAGCGCCT
CTGGAGTTGTAGCAGGTGGGGCTGGAGACAGTCCTGGCGGTAGCGGGGCC
GCCGCTGCTGCGAGCGCATCTGACGGCACTCAGGCAGCAGCGGCGGGTGC
GGACGATGCATTGGGGGCCTTCTTTGCAGCAGCCGGCAAGACTCCGTCTT
TGGAACCGCCGCCCGCCTCGGAAGAAGCCGCCGGCACAAGCGGCAACGGC
AACGGTGGCGGCGGCGGTGAGTCGCCCCAGATGCCAGGCCGCTCGTCTGA
CTCTCGGCTGGCCAGCTTGCTTCTGGCGGCGTCGGGCTCCGATCTTGGCG
TAGATGATGAGGGCAACGGCGGCGGCGGTGGCGACGGCGGAGCGGGCGCC
GCAGATGGGCAGCTGCCAGATATCTATGCGGTGCGGGCCGGCGAAGCCGG
CGAAATCGCTGCGGGAGCGATTAGCAAGGCGAGCGCGGTGGCGGCTCGCT
ACACGGCGGCAGCGGGGGGCGATGCCATGGACACGGAGAACGACCCGCCG
GCGCCGTTGCCTCTCCAAAGCGGCGACGAATTCGCCACGGCAGGCGGAGA
TGCAGCAATATTGGCGCACGGGACGGCAGCAGAGGAGGGAGCCACAGTCA
TGGATATGACGGCTTTAGCGACTGCAGCTGGAGCCGCAGACGACAGCGCA
ATGGAACCGTCAGAGGAAACAGTCCCGGCGGTGCAGCCACCGTTGCCAGC
GGCGCTAGCAGCG
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