mRNA_P-wetherbeei_contig15466.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15466.1.1
Unique NamemRNA_P-wetherbeei_contig15466.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15466.1.1 vs. uniprot
Match: D7FLZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ8_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 5.160e-25
Identity = 65/146 (44.52%), Postives = 78/146 (53.42%), Query Frame = 1
Query:    1 LVAFDPLTPPLEAATLAALGVGALPENEQGKRA-------------AGG----VTTLFFAPHCPMRLYSNILWANWGGEPFVSVPTAPRCLSDVLILGNSLVSYGDRLVSAADGADPTNCVLRVLPLLRETRLEPEADGERRRLKR 387
            ++ FDP     E A LAALG G L ENE+GKR              AGG      TLFF PHCP RLYSN+LWANW            R +  +LILGN + SY DRL+ A    DPTN +LR  PLL++  L P    +R R +R
Sbjct:    1 MLVFDPTMGEAEKAILAALGCGLL-ENEEGKRCCCRCCGERGGGDKAGGEDVATPTLFFMPHCPRRLYSNVLWANWSS----------RAMGSILILGNKISSYTDRLLDARSRVDPTNALLRAGPLLQDIDLLPYPGSDRARWRR 135          
BLAST of mRNA_P-wetherbeei_contig15466.1.1 vs. uniprot
Match: A0A6H5K910_9PHAE (SRR1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K910_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 7.960e-23
Identity = 64/146 (43.84%), Postives = 78/146 (53.42%), Query Frame = 1
Query:    1 LVAFDPLTPPLEAATLAALGVGALPENEQGKRA-------------AGG----VTTLFFAPHCPMRLYSNILWANWGGEPFVSVPTAPRCLSDVLILGNSLVSYGDRLVSAADGADPTNCVLRVLPLLRETRLEPEADGERRRLKR 387
            ++ FDP     E A +AALG G L ENE+GKR              AGG      TLFF PHCP RLYSN+LWANW            R +  +LILGN + SY DRL+ A    DPTN +LR  PLL++  L P    +R R +R
Sbjct:  323 MLVFDPTMGEAEKAIMAALGCGLL-ENEEGKRCCCRCCGERGSGDKAGGEDVATPTLFFMPHCPQRLYSNVLWANW----------CSRAMGSILILGNKISSYTDRLLDARSRVDPTNALLRAGPLLQDIDLLPYPGSDRARWRR 457          
BLAST of mRNA_P-wetherbeei_contig15466.1.1 vs. uniprot
Match: A0A4D9CW24_9STRA (SRR1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW24_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.150e-18
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   10 FDPLTPPLEAATLAALGVGALPENEQGKRAAGGVTTLFFAPHCPMRLYSNILWANWGGEPFVSVPTAPRCLSDVLILGNSLVSYGDRLVSAADGADPTNCVLRVLPLLRETRL 348
            FDP+   +++  L  LG   +P NE+ KR A  V TLFF P C  RLYSN+LWANW          +P  L +V+++GNSL SY +R  +  +  DPT+CVL +LP +RE  L
Sbjct:  195 FDPVFDDVDSYLLNRLGWRVIPHNEECKRPAR-VPTLFFMPCCHRRLYSNLLWANW----------SPESLKNVVVVGNSLKSYQERAWALEEDLDPTDCVLPLLPWVREMPL 296          
BLAST of mRNA_P-wetherbeei_contig15466.1.1 vs. uniprot
Match: A0A7S2WGH8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGH8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.190e-17
Identity = 51/138 (36.96%), Postives = 68/138 (49.28%), Query Frame = 1
Query:    4 VAFDPLTPPLEAATLAALGVGALPENEQGKR----------------------AAGGVTTLFFAPHCPMRLYSNILWANWGGEPFVSVPTAPRCLSDVLILGNSLVSYGDRLVSAADGADPTNCVLRVLPLLRETRLE 351
            V FDP+   +E   LA LG   L  +E+GKR                      AAG   T+FF PHCP RLYSN+LW NWG E           L  ++++GNS  +Y  R++S +   +P+NCVLR+  L  E   E
Sbjct:   99 VIFDPVFNEVEKRALAVLGWSVLDHDEEGKRPIAEPLVVASDDDPERSRSGCLAAG---TVFFMPHCPFRLYSNVLWRNWGPE-----------LGSMVVVGNSFAAYDQRIISRSARKNPSNCVLRLASLTMEESFE 222          
BLAST of mRNA_P-wetherbeei_contig15466.1.1 vs. uniprot
Match: A0A7S2S1E9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1E9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.580e-17
Identity = 51/138 (36.96%), Postives = 68/138 (49.28%), Query Frame = 1
Query:    4 VAFDPLTPPLEAATLAALGVGALPENEQGKR----------------------AAGGVTTLFFAPHCPMRLYSNILWANWGGEPFVSVPTAPRCLSDVLILGNSLVSYGDRLVSAADGADPTNCVLRVLPLLRETRLE 351
            V FDP+   +E   LA LG   L  +E+GKR                      AAG   T+FF PHCP RLYSN+LW NWG E           L  ++++GNS  +Y  R++S +   +P+NCVLR+  L  E   E
Sbjct:   99 VIFDPVFNEVEKRALAVLGWSVLDHDEEGKRPIAEPLVVASDDDPERSRSGCLAAG---TVFFMPHCPFRLYSNVLWRNWGPE-----------LGSMVVVGNSFAAYDQRIISRSARKNPSNCVLRLASLTMEESFE 222          
BLAST of mRNA_P-wetherbeei_contig15466.1.1 vs. uniprot
Match: A0A7S2EQA1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EQA1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.470e-15
Identity = 46/121 (38.02%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   10 FDPLTPPLEAATLAA-LGVGALPENEQGKRAAG--------GVTTLFFAPHCPMRLYSNILWANWGGEPFVSVPTAPRCLSDVLILGNSLVSYGDRLVSAADG--ADPTNCVLRVLPLLRE 339
            ++PL  P+E   LA    V  + ENE+GKR A           TTLF+ PHCPMRLY+N+LW NW     +   +    +  + I GNS ++Y  R+V ++    +D TN + RVLP ++E
Sbjct:  189 YEPLLLPIERIVLANHFSVQIIEENERGKRRANTLTNTYSSSTTTLFYMPHCPMRLYTNVLWTNWD---LLLQTSQTNMIHTITIFGNSFLAYDTRIVKSSKERESDDTNGLFRVLPFVKE 306          
BLAST of mRNA_P-wetherbeei_contig15466.1.1 vs. uniprot
Match: A0A7S3VE53_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VE53_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.140e-14
Identity = 45/124 (36.29%), Postives = 65/124 (52.42%), Query Frame = 1
Query:    1 LVAFDPLTPPLEAATLAALGVGALPENEQGKRAAGG----------VTTLFFAPHCPMRLYSNILWANWGGEPFVSVPTAPRCLSDVLILGNSLVSYGDRLVSAADGADPTNCVLRVLPLLRET 342
            +V F+P    +E   LA   V  L  NEQGKR               +TLF+ PHCPMRLYSN+LWANW      +          ++I+GNS ++Y DR++S+    D +N +  +LP + E+
Sbjct:  232 MVYFEPFINAIERDVLAHFHVQVLDVNEQGKRRISNRESNPSTHTRPSTLFYMPHCPMRLYSNVLWANWEKNLLWN--------GRIVIMGNSFIAYDDRIISSEKRKDRSNGIFPLLPFVSES 347          
BLAST of mRNA_P-wetherbeei_contig15466.1.1 vs. uniprot
Match: A0A0D2VP57_CAPO3 (SRR1-like protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VP57_CAPO3)

HSP 1 Score: 77.4 bits (189), Expect = 2.360e-14
Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   10 FDPLTPPLEAATLAALGVGALPENEQGKRAAGGVTTLFFAPHCPMRLYSNILWANWGGEPFVSVPTAPRCLSDVLILGNSLVSYGDRLVSAADGADPTNCVLRVLPLLRETRL 348
            FDP+    + A +  LG   + ENE+ KR A  V TLF+ PHC  RLY+N+LWANW          +P  L+ VLILGN L  Y +R+ S A        + +VLP +RET L
Sbjct:  139 FDPVFTVQDIAAVQQLGGAIISENEEAKRKAS-VPTLFYMPHCGGRLYNNLLWANW----------SPAALARVLILGNPLSRYAERM-SNASFQTALPYIAQVLPAVRETPL 239          
BLAST of mRNA_P-wetherbeei_contig15466.1.1 vs. uniprot
Match: A0A7S4DID7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DID7_HETAK)

HSP 1 Score: 74.3 bits (181), Expect = 4.130e-13
Identity = 41/94 (43.62%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   10 FDPLTPPLEAATLAALGVGALPENEQGKRAAGGVTTLFFAPHCPMRLYSNILWANWGGEPFVSVPTAPRCLSDVLILGNSLVSYGDRLVSAADG 291
            FDP+   ++      LG   L  NE GKR A    TLFF PHCPMRLYSN+LW NWG             L++ +I+GNS  +Y  R + AA G
Sbjct:  123 FDPILKEVDIVLAEKLGFQLLQVNEAGKRLASK-RTLFFMPHCPMRLYSNLLWTNWGSF-----------LANTIIIGNSFAAYDRRTLVAATG 204          
BLAST of mRNA_P-wetherbeei_contig15466.1.1 vs. uniprot
Match: A0A7R9ZLK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLK5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.250e-13
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 1
Query:   10 FDPLTPPLEAATLAALGVGALPENEQGKRAAGGV-------TTLFFAPHCPMRLYSNILWANWGGEPFVSVPTAPRCLSDVLILGNSLVSYGDRLVSAADGADPTNCVLRVL 324
            FDP   P+EAA L       +  NE+G R+ GG         T+FF PHCPM LYSN+L+ NW                 V+I+GNSL  Y DRL++       +  VL+ +
Sbjct:   17 FDPCMTPVEAAILVRNSFHIIETNERGNRSIGGNGDHDNGDQTIFFMPHCPMMLYSNVLYTNWD-----------HLQRSVIIIGNSLTDYADRLLAEDHALRSSQAVLKAI 117          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15466.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FLZ8_ECTSI5.160e-2544.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K910_9PHAE7.960e-2343.84SRR1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A4D9CW24_9STRA4.150e-1844.25SRR1 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S2WGH8_9STRA3.190e-1736.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2S1E9_9STRA6.580e-1736.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2EQA1_9STRA5.470e-1538.02Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3VE53_9STRA1.140e-1436.29Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A0D2VP57_CAPO32.360e-1442.48SRR1-like protein n=2 Tax=Capsaspora owczarzaki (s... [more]
A0A7S4DID7_HETAK4.130e-1343.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9ZLK5_9STRA4.250e-1336.61Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15466contigP-wetherbeei_contig15466:923..1468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FLZ8
Preferred nameSRR1
PFAMsRVT_3,SRR1
Model size399
Max annot lvl2759|Eukaryota
KEGG koko:K02886
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0007017,GO:0007026,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009987,GO:0010017,GO:0010639,GO:0023052,GO:0031110,GO:0031111,GO:0031114,GO:0032886,GO:0033043,GO:0042752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043242,GO:0043244,GO:0044424,GO:0044464,GO:0048511,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051493,GO:0051494,GO:0051606,GO:0051716,GO:0065007,GO:0070507,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0104004,GO:1901879,GO:1901880,GO:1902903,GO:1902904
Exons2
Evalue8.46e-26
EggNOG OGsKOG3131@1|root,KOG3131@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_000330.1
Descriptionrhythmic process
Cds size399
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186057.1061268-CDS-P-wetherbeei_contig15466:922..11031683186057.1061268-CDS-P-wetherbeei_contig15466:922..1103Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15466 923..1103 +
1683186057.1189895-CDS-P-wetherbeei_contig15466:1250..14681683186057.1189895-CDS-P-wetherbeei_contig15466:1250..1468Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15466 1251..1468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15466.1.1prot_P-wetherbeei_contig15466.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15466 923..1468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15466.1.1

>prot_P-wetherbeei_contig15466.1.1 ID=prot_P-wetherbeei_contig15466.1.1|Name=mRNA_P-wetherbeei_contig15466.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
LVAFDPLTPPLEAATLAALGVGALPENEQGKRAAGGVTTLFFAPHCPMRL
YSNILWANWGGEPFVSVPTAPRCLSDVLILGNSLVSYGDRLVSAADGADP
TNCVLRVLPLLRETRLEPEADGERRRLKRRGER
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mRNA from alignment at P-wetherbeei_contig15466:923..1468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15466.1.1 ID=mRNA_P-wetherbeei_contig15466.1.1|Name=mRNA_P-wetherbeei_contig15466.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig15466:923..1468+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGTGGCGTTCGATCCGTTGACTCCGCCACTGGAGGCAGCGACGCTAGC GGCGCTCGGCGTCGGCGCCTTGCCTGAGAACGAGCAGGGCAAGCGGGCGG CCGGCGGCGTGACAACACTGTTCTTTGCGCCACACTGCCCGATGCGTCTG TACAGCAACATACTTTGGGCGAATTGGGGAGGTGGCGGTGGTGGCAGCGA CGGAGAACCTGCTGCTGCATCCTTTATGGTTAGCGAAGGCGGATGCGGCG GTGCCGCATGCGGTGGTGTTAGTGGCGTCGGCGGGAGCAGCGACGGCGGT GCTGCTTCAGGTTTTTCTGTCCCTGCAGGTGAGCCGTTTGTTTCCGTGCC GACGGCACCGCGCTGTCTGTCGGACGTCCTGATTCTTGGCAACAGCCTGG TCTCCTACGGGGACCGCCTGGTGTCCGCCGCGGATGGAGCAGATCCGACC AACTGCGTCCTTCGCGTGCTGCCGCTGCTGCGGGAGACAAGGCTCGAGCC CGAGGCGGATGGTGAGCGGCGGCGGTTGAAGCGGCGAGGTGAAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15466:923..1468+

>mRNA_P-wetherbeei_contig15466.1.1 ID=mRNA_P-wetherbeei_contig15466.1.1|Name=mRNA_P-wetherbeei_contig15466.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig15466:923..1468+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGTGGCGTTCGATCCGTTGACTCCGCCACTGGAGGCAGCGACGCTAGC
GGCGCTCGGCGTCGGCGCCTTGCCTGAGAACGAGCAGGGCAAGCGGGCGG
CCGGCGGCGTGACAACACTGTTCTTTGCGCCACACTGCCCGATGCGTCTG
TACAGCAACATACTTTGGGCGAATTGGGGAGGTGAGCCGTTTGTTTCCGT
GCCGACGGCACCGCGCTGTCTGTCGGACGTCCTGATTCTTGGCAACAGCC
TGGTCTCCTACGGGGACCGCCTGGTGTCCGCCGCGGATGGAGCAGATCCG
ACCAACTGCGTCCTTCGCGTGCTGCCGCTGCTGCGGGAGACAAGGCTCGA
GCCCGAGGCGGATGGTGAGCGGCGGCGGTTGAAGCGGCGAGGTGAAAGG
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