mRNA_P-wetherbeei_contig15427.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15427.1.1
Unique NamemRNA_P-wetherbeei_contig15427.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15427.1.1 vs. uniprot
Match: A0A7Y5Q5G0_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7Y5Q5G0_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 3.960e-9
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = 1 
Query:    7 VEVRDAYGNVRRAGGDAVAATARLRGGDAAEIISGAVADFGNGTYEVTYTPLLSGRYSLSVFLPVSDEVAGSPFRLLATPGPSDAAGTSAGGGGLAKAMAGGLFNESVFEVFVGDAHSNRRADGGDAAALAVS 405
            V VRDA+GNVR AGGD+VAA+  + G +A   ++  + D  +GTY +TYTP ++G   +++ +     +AGSPF  L +P  +D A  SA         AG     +V  V V DA+ N R  GGD+ A  ++
Sbjct:  150 VTVRDAFGNVRTAGGDSVAAS--ISGANAGLPVT--LVDNHDGTYNLTYTPTVTGTDQMAITVG-GQAIAGSPFSSLVSPAAADPAHCSA------VVPAGTAGAPTVCTVTVRDANDNVRTAGGDSVAATIA 271
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BLAST of mRNA_P-wetherbeei_contig15427.1.1 vs. uniprot
Match: A0A0M0JMR7_9EUKA (Gelation factor n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JMR7_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 3.820e-7
Identity = 46/106 (43.40%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:    1 FLVEVRDAYGNVRRAGGDAVAATARLRGGDAAEIISGAVADFGNGTYEVTYTPLLSGRYSLSVFL---PVSDEVAGSPFRLLATPGPSDAAGTSAGGGGLAKAMAG 309
            F +  RDA G  + AGGD        RGG    +++ +VAD GNGTY V YTP +SG Y L V L   PV+D    SP+ L   P P+  A   A G GL +A AG
Sbjct:  226 FTLAARDAEGVAQTAGGDDFRVGLTSRGG---VVLNASVADVGNGTYSVEYTPTVSGVYRLDVSLGGLPVAD----SPYTLSVFPAPTSPAHCVATGAGLLEATAG 324
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BLAST of mRNA_P-wetherbeei_contig15427.1.1 vs. uniprot
Match: A0A0U9HK99_KLENI (Filamin n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HK99_KLENI)

HSP 1 Score: 58.2 bits (139), Expect = 1.260e-5
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:  625 GRYSIAYNLTLAGDWRMAVTMAGSHIVGSPFALQIVPGPTFPAACTCEGCGALASSGGVAST 810
            G  ++ Y LT+ G ++MA+T+ GS + GSPF+L + PGP   A CT  G G   ++ GVA+T
Sbjct:  362 GNSTLQYRLTVVGSYKMALTLGGSPVAGSPFSLTVTPGPVSAAQCTASGSGLSTATAGVAAT 423
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BLAST of mRNA_P-wetherbeei_contig15427.1.1 vs. uniprot
Match: A0A7S0TRB3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TRB3_HEMAN)

HSP 1 Score: 54.7 bits (130), Expect = 1.800e-5
Identity = 42/136 (30.88%), Postives = 62/136 (45.59%), Query Frame = 1 
Query:    1 FLVEVRDAYGNVRRAGGDAVAATARLRGGDAAEIIS---------------GAVADFGNGTYEVTYTPLLSGRYSLSVFLPVSDEVAGSPFRLLATPGPSDAAGTSAGGGGLAKAMAGGLFNESVFEVFVGDAHSN 363
            F +  +D++G     GGDA + +A   G  + +  S               G++ D   GTY V+YTP +SGRYS+ V L    ++  SPF L+   G   A  + A G GL  A  G    +  F +   D +SN
Sbjct:   16 FTIATKDSFGQTSTRGGDAFSVSADRPGSASLQFFSYCSPSLSCVQSSAGSGSITDRNTGTYAVSYTPTVSGRYSVDVKLGKISKIQSSPFDLIVKAGTLCATKSRAYGAGLTIATTG---MQGRFTLVAKDEYSN 148
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BLAST of mRNA_P-wetherbeei_contig15427.1.1 vs. uniprot
Match: A0A7S2C9F1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9F1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.560e-5
Identity = 86/362 (23.76%), Postives = 127/362 (35.08%), Query Frame = 1 
Query:    1 FLVEVRDAYGNVRRAGGDAVAATAR-------LRGGDAAEIISGA------VADFGNGTYEVTYTPLLSGRYSLSVFLPVS---------------------DEVAGSPFRLLATPGPSDAAGTSAGGGGLAKAMAGGLFNESVFEVFVGDAHSNRRADGGDAAALAVSFSWDGDGVVNDGAIGGGGGAXXXXXXXXFSTGVGNAGRSLAAADAXXXXXXXXXSGVAGRAAVAAASVTDLGSGRYSIAYNLTLAGDWRMAVTMAGS-----------------------HIVGSPFALQIVPGPTFPAACTCEGCGALASSGGVASTPSAAGVASALILVARDRYGNAVPGGREAWSVALEG 915
            F VE RD +GN+R  GGD V++ A        L   +      GA      V D G+GTY ++Y P+++G Y++SV +  S                       + GSPF+++  PG +  +  +A G    +A AG         +   D HSN R  GGD   + +                               TG         A D                      SVTD G G YS+ Y    +G + + + +  +                       HI GSPF + ++P    P+A T    GA +  G   +T S         + ARD Y N +  G   W + L G
Sbjct:  211 FTVEARDTFGNLRLKGGDQVSSVATQIVIGRTLSTDNEQSTYLGAGSFTTDVIDAGDGTYNMSYYPIIAGVYTMSVLVGTSATGPAPHLDLGYSNIEEATAGSHIRGSPFKVVIHPGATFGSTCTAFGENTYRADAGIATPAGGVTIVARDKHSNVRPGGGDEFVVKL--------------------VPVYPQEPRTMTGT--------APDPSFDG-----------------SVTDNGDGTYSVTYYTNRSGTYDLMIKLRETPSPPHHLDDPTQTYDAEALESDVHIAGSPFRVYVLP--QLPSASTSTASGAGSRYGYTNTTTS-------FTVHARDEYSNLLDRGGAEWYLRLRG 518
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BLAST of mRNA_P-wetherbeei_contig15427.1.1 vs. uniprot
Match: C1EH03_MICCC (Filamin like protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EH03_MICCC)

HSP 1 Score: 55.5 bits (132), Expect = 9.510e-5
Identity = 46/135 (34.07%), Postives = 62/135 (45.93%), Query Frame = 1 
Query:    1 FLVEVRDAYGNVRRAGGDAVAATARLRGGDAAEIISGAVADFGNGTYEVTYTPLLSGRYSLSVFLPVSDEVAGSPFRLLATPGPSDAAGTSAGGGGLAKAMAGGLFNESVFEVFVGDAHSNRRADG-GDAAALAV 402
            F+VE RDA+GN+   G +    +   +  DA  I S AV    NGTY  T+TP  SG YSL V    S     + F++    G +D    + GG G       G+     F V+V DA+ N  A    D  A+ V
Sbjct: 2632 FIVEARDAFGNLHDDGDERFTLSVTAQPADAVTIKSPAVVANPNGTYTATFTPYTSGDYSLKVTHEGSGLTLLNDFKIAVASGKADKDRVTLGGAGGFHGGKAGVAQS--FTVYVRDAYDNPVASNPADGIAMPV 2764
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15427.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7Y5Q5G0_9BACT3.960e-938.35Uncharacterized protein (Fragment) n=1 Tax=Armatim... [more]
A0A0M0JMR7_9EUKA3.820e-743.40Gelation factor n=1 Tax=Chrysochromulina tobinii T... [more]
A0A0U9HK99_KLENI1.260e-543.55Filamin n=1 Tax=Klebsormidium nitens TaxID=105231 ... [more]
A0A7S0TRB3_HEMAN1.800e-530.88Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2C9F1_9STRA7.560e-523.76Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
C1EH03_MICCC9.510e-534.07Filamin like protein n=1 Tax=Micromonas commoda (s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15427contigP-wetherbeei_contig15427:325..1585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LIF9
PFAMsActin,CH,Calx-beta,Filamin,Ist1,PA14
Model size951
Max annot lvl2759|Eukaryota
KEGG koko:K04437,ko:K06572
KEGG Pathwayko04010,ko04360,ko04510,ko05132,ko05205,map04010,map04360,map04510,map05132,map05205
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.62e-21
EggNOG OGsCOG5069@1|root,KOG0518@2759|Eukaryota
Descriptionregulation of membrane repolarization during atrial cardiac muscle cell action potential
Cds size951
COG categoryZ
BRITEko00000,ko00001,ko04090,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186055.6142714-CDS-P-wetherbeei_contig15427:324..11311683186055.6142714-CDS-P-wetherbeei_contig15427:324..1131Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15427 325..1131 -
1683186055.6243844-CDS-P-wetherbeei_contig15427:1441..15851683186055.6243844-CDS-P-wetherbeei_contig15427:1441..1585Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15427 1442..1585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15427.1.1prot_P-wetherbeei_contig15427.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15427 325..1585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15427.1.1

>prot_P-wetherbeei_contig15427.1.1 ID=prot_P-wetherbeei_contig15427.1.1|Name=mRNA_P-wetherbeei_contig15427.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=317bp
FLVEVRDAYGNVRRAGGDAVAATARLRGGDAAEIISGAVADFGNGTYEVT
YTPLLSGRYSLSVFLPVSDEVAGSPFRLLATPGPSDAAGTSAGGGGLAKA
MAGGLFNESVFEVFVGDAHSNRRADGGDAAALAVSFSWDGDGVVNDGAIG
GGGGADGSADGNGFSTGVGNAGRSLAAADAVAAAAAAKASGVAGRAAVAA
ASVTDLGSGRYSIAYNLTLAGDWRMAVTMAGSHIVGSPFALQIVPGPTFP
AACTCEGCGALASSGGVASTPSAAGVASALILVARDRYGNAVPGGREAWS
VALEGDVSMQTNGGRSG
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mRNA from alignment at P-wetherbeei_contig15427:325..1585-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15427.1.1 ID=mRNA_P-wetherbeei_contig15427.1.1|Name=mRNA_P-wetherbeei_contig15427.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1261bp|location=Sequence derived from alignment at P-wetherbeei_contig15427:325..1585- (Phaeothamnion wetherbeei SAG_119_79)
TTCCTGGTGGAGGTTCGGGACGCGTACGGAAACGTCCGACGTGCCGGCGG
CGACGCAGTGGCGGCAACGGCGCGGCTGCGGGGCGGCGATGCGGCGGAGA
TCATATCTGGCGCGGTCGCGGACTTTGGCAATGGGACTTACGAGGTGAGT
GCGAATGGAGGAGTGGGCTTCTTCTTTCCTCTGTTTCATTGTCCTTTTTT
GGCGGGAGCAATTTTTTTTATTGAAGAAACTTACCGGCAGATGCTCTGTG
CTTTTGGTCGGTCGGTAATCTTTCTTTTAAATGCTGGAGTGACAGGTAGA
AGCCGGAAGGAAGGAGTGGCCTTTCACTAAAGGTTCAGCGTCACATATCT
CGTTAATGCTATTCTGTGGCTAAGCCTCTGCTAGAAGTGCCGCCATCATC
GCAACAATCCACCCTGCCGCCGTTTGTCACCGCGCCTGCGACCCGGTCGG
CCAGGTGACCTACACGCCGCTCCTGTCCGGAAGATACTCCCTGAGTGTCT
TTCTGCCAGTTAGCGACGAGGTTGCGGGGAGTCCCTTTCGGCTGCTCGCG
ACGCCGGGCCCTTCAGACGCTGCCGGCACGTCAGCGGGCGGCGGCGGACT
GGCGAAGGCGATGGCCGGCGGCCTGTTCAACGAGTCGGTTTTCGAAGTCT
TTGTGGGCGACGCGCACAGCAACCGCCGTGCGGACGGCGGGGATGCCGCG
GCGCTCGCAGTCAGTTTTTCCTGGGACGGCGACGGCGTCGTCAATGACGG
CGCCATCGGCGGTGGTGGCGGGGCCGATGGCAGCGCCGACGGCAATGGCT
TCAGCACAGGCGTCGGCAATGCCGGGCGCTCCTTGGCCGCCGCGGATGCA
GTGGCGGCTGCAGCAGCGGCGAAGGCTTCCGGAGTGGCTGGCAGGGCAGC
AGTGGCTGCTGCTTCTGTCACGGATCTGGGGAGCGGGCGGTACAGCATCG
CCTACAACTTGACTCTGGCGGGCGACTGGCGAATGGCCGTGACAATGGCC
GGCAGCCACATAGTCGGGTCACCGTTTGCACTGCAAATCGTGCCGGGACC
AACCTTCCCGGCCGCCTGCACCTGCGAGGGCTGCGGCGCGCTCGCTTCAT
CCGGTGGAGTGGCCTCCACACCTTCGGCGGCAGGGGTGGCATCGGCGCTT
ATACTGGTGGCGCGCGATCGCTACGGAAACGCTGTGCCGGGAGGCCGTGA
GGCGTGGTCCGTCGCGCTGGAAGGAGACGTCTCGATGCAGACCAATGGCG
GCCGCAGCGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15427:325..1585-

>mRNA_P-wetherbeei_contig15427.1.1 ID=mRNA_P-wetherbeei_contig15427.1.1|Name=mRNA_P-wetherbeei_contig15427.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=951bp|location=Sequence derived from alignment at P-wetherbeei_contig15427:325..1585- (Phaeothamnion wetherbeei SAG_119_79)
TTCCTGGTGGAGGTTCGGGACGCGTACGGAAACGTCCGACGTGCCGGCGG
CGACGCAGTGGCGGCAACGGCGCGGCTGCGGGGCGGCGATGCGGCGGAGA
TCATATCTGGCGCGGTCGCGGACTTTGGCAATGGGACTTACGAGGTGACC
TACACGCCGCTCCTGTCCGGAAGATACTCCCTGAGTGTCTTTCTGCCAGT
TAGCGACGAGGTTGCGGGGAGTCCCTTTCGGCTGCTCGCGACGCCGGGCC
CTTCAGACGCTGCCGGCACGTCAGCGGGCGGCGGCGGACTGGCGAAGGCG
ATGGCCGGCGGCCTGTTCAACGAGTCGGTTTTCGAAGTCTTTGTGGGCGA
CGCGCACAGCAACCGCCGTGCGGACGGCGGGGATGCCGCGGCGCTCGCAG
TCAGTTTTTCCTGGGACGGCGACGGCGTCGTCAATGACGGCGCCATCGGC
GGTGGTGGCGGGGCCGATGGCAGCGCCGACGGCAATGGCTTCAGCACAGG
CGTCGGCAATGCCGGGCGCTCCTTGGCCGCCGCGGATGCAGTGGCGGCTG
CAGCAGCGGCGAAGGCTTCCGGAGTGGCTGGCAGGGCAGCAGTGGCTGCT
GCTTCTGTCACGGATCTGGGGAGCGGGCGGTACAGCATCGCCTACAACTT
GACTCTGGCGGGCGACTGGCGAATGGCCGTGACAATGGCCGGCAGCCACA
TAGTCGGGTCACCGTTTGCACTGCAAATCGTGCCGGGACCAACCTTCCCG
GCCGCCTGCACCTGCGAGGGCTGCGGCGCGCTCGCTTCATCCGGTGGAGT
GGCCTCCACACCTTCGGCGGCAGGGGTGGCATCGGCGCTTATACTGGTGG
CGCGCGATCGCTACGGAAACGCTGTGCCGGGAGGCCGTGAGGCGTGGTCC
GTCGCGCTGGAAGGAGACGTCTCGATGCAGACCAATGGCGGCCGCAGCGG
T
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