mRNA_P-wetherbeei_contig15404.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15404.1.1
Unique NamemRNA_P-wetherbeei_contig15404.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15404.1.1 vs. uniprot
Match: D8LM90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM90_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 6.180e-30
Identity = 62/104 (59.62%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    1 NYHHGEPDEITAVYWGTALVRGYKAFLDIKQPTWREYKPAPQTPHVNPAVVPTGCWEHANVYAVYAA-----LAALNAEPRFLSMSPDTGIADLATEETSDSVR 297
            +YH G  DE  A++ G ALV+GYKAFLD+KQ  WREY   P  P VNP VVP+GC EHAN+YA+YA      L AL  EPRFLSM+PDTG+ DL  EET   VR
Sbjct:   26 DYHAGREDESKALFVGNALVKGYKAFLDVKQKGWREYVEEPGPPLVNPVVVPSGCAEHANIYAIYAVDSRQVLNALLMEPRFLSMTPDTGLVDLTAEETGRFVR 129          
BLAST of mRNA_P-wetherbeei_contig15404.1.1 vs. uniprot
Match: A0A1Z5K7B1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7B1_FISSO)

HSP 1 Score: 115 bits (289), Expect = 7.530e-30
Identity = 58/104 (55.77%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    1 NYHHGEPDEITAVYWGTALVRGYKAFLDIKQPTWREYKPAPQTPHVNPAVVPTGCWEHANVYAVYA-----ALAALNAEPRFLSMSPDTGIADLATEETSDSVR 297
            +YHHG+ D + AV+ G ALVRGYKAFLD+ QP WR+Y   P  P +N  V P+GC+EHAN Y +Y       +A LN EPRFLS++PDTG+ DL  EETS  VR
Sbjct:   49 DYHHGQDDAVPAVFLGKALVRGYKAFLDVMQPGWRQYIEEPGQPLINSNVFPSGCYEHANEYWIYLIDSRQVMAVLNNEPRFLSITPDTGMVDLRAEETSPVVR 152          
BLAST of mRNA_P-wetherbeei_contig15404.1.1 vs. uniprot
Match: A0A1Z5K0G4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0G4_FISSO)

HSP 1 Score: 110 bits (276), Expect = 2.120e-27
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 NYHHGEPDEITAVYWGTALVRGYKAFLDIKQPTWREYKPAPQTPHVNPAVVPTGCWEHANVYAVYA-----ALAALNAEPRFLSMSPDTGIADLATEETSDSVR 297
            +YHHG+ D + A++ G  LVRGYKAFLD+ QP WR+Y   P  P +N  V PTGC+EHAN Y +Y       +A LN EPRFLS++PDTG+ DL   ET+  VR
Sbjct:   49 DYHHGQDDAVPALFLGKGLVRGYKAFLDVMQPGWRQYIEEPGQPLINSNVFPTGCYEHANEYWIYLIDARQVMAVLNNEPRFLSITPDTGMVDLQAGETTPVVR 152          
BLAST of mRNA_P-wetherbeei_contig15404.1.1 vs. uniprot
Match: B7G1X2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G1X2_PHATC)

HSP 1 Score: 104 bits (260), Expect = 6.300e-25
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    1 NYHHGEPDEITAVYWGTALVRGYKAFLDIKQPTWREYKPAPQTPHVNPAVVPTGCWEHANVYAVYAA-----LAALNAEPRFLSMSPDTGIADLATEETSDSVR 297
            +YH G+ DE+ AV+ G ALVRG KA+LD+ Q  WR+Y   P  P +N  VV +GC EHAN Y +YA      LA LN EPRFLS++PDTG+ DL   ET  +V+
Sbjct:   46 DYHSGQDDEVRAVFVGRALVRGTKAYLDVMQDGWRQYTSEPGQPLINSVVVVSGCHEHANQYWIYAVDSRQVLAVLNNEPRFLSITPDTGLVDLTVAETDKAVK 149          
BLAST of mRNA_P-wetherbeei_contig15404.1.1 vs. uniprot
Match: A0A813DXW5_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DXW5_POLGL)

HSP 1 Score: 100 bits (250), Expect = 7.380e-24
Identity = 57/95 (60.00%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   34 AVYWGTALVRGYKAFLDIKQPTWREYKPAPQ-TPHVNPAVVPTGCWEHANVYAVY-----AALAALNAEPRFLSMSPDTGIADLATEETSDSVRR 300
            A + G AL RG KA+ DIK P+ REY PA +    VNPA+V TGCWEHANVYAVY     AAL AL  EPR+LSMSPD    DL  EETSD+++R
Sbjct:   56 ATFLGWALCRGVKAYFDIKDPSCREYVPAAEGAARVNPAMVATGCWEHANVYAVYLAHEKAALKALLHEPRYLSMSPDMAQMDLKAEETSDNLKR 150          
BLAST of mRNA_P-wetherbeei_contig15404.1.1 vs. uniprot
Match: A0A1E7FPM2_9STRA (Uncharacterized protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FPM2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 7.870e-24
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   16 EPDEITAVYWGTALVRGYKAFLDIKQPTWREYKPAPQTPHVNPAVVPTGCWEHANVYAVYA-----ALAALNAEPRFLSMSPDTGIADL 267
            +   + A + G ALVRGYK+FLDIK PTWREYK   +   VNPA+VPTGC EHAN YA+YA     A+ AL  EPRFLS++ D G+ADL
Sbjct:   73 DASSVNATFLGKALVRGYKSFLDIKNPTWREYKGEKELKTVNPAIVPTGCEEHANRYAIYAVDSRQAINALAGEPRFLSIAADMGLADL 161          
BLAST of mRNA_P-wetherbeei_contig15404.1.1 vs. uniprot
Match: A0A7S3LEC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEC9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.550e-23
Identity = 53/93 (56.99%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   46 GTALVRGYKAFLDIKQPTWREYKPAPQTPHV-NPAVVPTGCWEHANVYAVYAA-----LAALNAEPRFLSMSPDTGIADLATEETSDSVRRTA 306
            GTALVRGYKA+LDIK P +REYK  P  P V NP ++PTGC+  AN+Y +Y       L  L  EPRFLS++PDTG+ DL   ETSD+VR+ A
Sbjct:   18 GTALVRGYKAYLDIKPPGYREYKAEPYPPKVPNPVIIPTGCYHDANIYWLYLVKSQQVLHILAGEPRFLSITPDTGLVDLKAAETSDAVRQLA 110          
BLAST of mRNA_P-wetherbeei_contig15404.1.1 vs. uniprot
Match: B7G1J3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1J3_PHATC)

HSP 1 Score: 92.8 bits (229), Expect = 1.100e-20
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 NYHHGEPD-EITAVYWGTALVRGYKAFLDIKQPTWREYKPAPQTPHVNPAVVPTGCWEHANVYAVY-----AALAALNAEPRFLSMSPDTGIADLATEETSDSVRRTA 306
            NY H +   +  A + GTALV GYKA+LD+K   +REY+ A      N  V+PTGC  HAN+Y V+       L  L  EPRFLS++PDTG+ DL  +ETSD+VRR A
Sbjct:   48 NYRHPQTQMDYPAQFVGTALVPGYKAYLDVKDKGFREYREANPPTVPNAVVMPTGCAAHANIYHVFFVPTPVLLNVLAGEPRFLSITPDTGLVDLQADETSDTVRRVA 155          
BLAST of mRNA_P-wetherbeei_contig15404.1.1 vs. uniprot
Match: A0A1H8DWD8_9PROT (Uncharacterized protein n=2 Tax=Nitrosomonas marina TaxID=917 RepID=A0A1H8DWD8_9PROT)

HSP 1 Score: 85.5 bits (210), Expect = 6.220e-18
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   16 EPDEITAVYWGTALVRGYKAFLDIKQPTWREYKPAPQTPHVNPAVVPTGCWEHANVYAVYAA-----LAALNAEPRFLSMSPDTGIADLATEETSDSVR 297
            + + + AV+ G AL+RG+KA LDIK   WREY+  P    VNPA++ TG    AN+Y++Y       + AL  EPRFLSM+PDT + D   EET ++V+
Sbjct:   87 DSETVKAVFLGKALIRGFKAHLDIKSAGWREYRAEPAINPVNPAMIATGDRNDANIYSIYGVDRRQLVTALLNEPRFLSMTPDTALVDRNAEETYETVK 185          
BLAST of mRNA_P-wetherbeei_contig15404.1.1 vs. uniprot
Match: A0A0M0K0G8_9EUKA (Cytoplasmic protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0G8_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 9.520e-14
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 1
Query:   19 PDEITAVYWGTALVRGYKAFLDIKQPTWREYKPAPQTPHVNPAVVPTGCWEHANVYAVY-----AALAALNAEPRFLSMSPDTGIADLATEETSDSVR 297
            PD+  AV  G+A+VRG +A+LD+K+   RE++PAP+   VNPA V TG  + AN+YAVY       L AL  EPR+L+++PD    DL    TS +VR
Sbjct:  279 PDQ-PAVLVGSAVVRGVRAYLDVKEAGCREHRPAPEKARVNPANVVTGDRDDANLYAVYLVHEAVVLKALLGEPRYLAIAPDAVRIDLMAPHTSPAVR 375          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15404.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LM90_ECTSI6.180e-3059.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5K7B1_FISSO7.530e-3055.77Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5K0G4_FISSO2.120e-2752.88Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
B7G1X2_PHATC6.300e-2551.92Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A813DXW5_POLGL7.380e-2460.00Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A1E7FPM2_9STRA7.870e-2458.43Uncharacterized protein n=2 Tax=Bacillariaceae Tax... [more]
A0A7S3LEC9_9STRA2.550e-2356.99Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
B7G1J3_PHATC1.100e-2049.07Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1H8DWD8_9PROT6.220e-1845.45Uncharacterized protein n=2 Tax=Nitrosomonas marin... [more]
A0A0M0K0G8_9EUKA9.520e-1446.94Cytoplasmic protein n=1 Tax=Chrysochromulina tobin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15404contigP-wetherbeei_contig15404:501..1612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LM90
Model size306
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.01e-30
EggNOG OGs2EIPY@1|root,2SP2G@2759|Eukaryota
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186055.0113583-CDS-P-wetherbeei_contig15404:500..5721683186055.0113583-CDS-P-wetherbeei_contig15404:500..572Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15404 501..572 +
1683186055.0263398-CDS-P-wetherbeei_contig15404:1013..11391683186055.0263398-CDS-P-wetherbeei_contig15404:1013..1139Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15404 1014..1139 +
1683186055.0364318-CDS-P-wetherbeei_contig15404:1504..16121683186055.0364318-CDS-P-wetherbeei_contig15404:1504..1612Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15404 1505..1612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15404.1.1prot_P-wetherbeei_contig15404.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15404 501..1612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15404.1.1

>prot_P-wetherbeei_contig15404.1.1 ID=prot_P-wetherbeei_contig15404.1.1|Name=mRNA_P-wetherbeei_contig15404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
NYHHGEPDEITAVYWGTALVRGYKAFLDIKQPTWREYKPAPQTPHVNPAV
VPTGCWEHANVYAVYAALAALNAEPRFLSMSPDTGIADLATEETSDSVRR
TA
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mRNA from alignment at P-wetherbeei_contig15404:501..1612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15404.1.1 ID=mRNA_P-wetherbeei_contig15404.1.1|Name=mRNA_P-wetherbeei_contig15404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1112bp|location=Sequence derived from alignment at P-wetherbeei_contig15404:501..1612+ (Phaeothamnion wetherbeei SAG_119_79)
AACTACCACCACGGCGAGCCGGATGAGATAACTGCCGTCTACTGGGGCAC GGCGCTCGTGCGGGGATACAAGGTGAAGAGGGTTACGGTTGGGGTCAGTC GGTCAGTGCACCCTCTTTTCTCTTTATTTGTTTTGCCCCGCCAGCTGCGC CGCGGCAAGTGGTACCGTTCTTTCTTCGCTAGGTCGGGTCTCTTGTACCG TCTGTCGGCTTTTGGCCGGAAGCGTGATGTGGAATGTGCGGCTAGAGACT TTGTAGGGGATTGCGTTTTGGTTGCGGCTTTTATCTTGGCGTCCCTGCAA CATTGGAGTTTGATGCACCACGATCGACACCCGTCTGCCTTTCTTCTCCC CAAATCCGCTAACCGACACCAAACCAATACCGAACTGCTACCGACATGTC GCAGCTGAAAAAACAAAACGCCGCGATCCCCCGCCGAAAATGCCACCTCT GCCACGCCGGAACCGCCAAAACAACAACCTAACCGGAACCGTCGAAACGA CAAACAACAATAGGCGTTTCTGGACATCAAGCAGCCGACGTGGCGTGAGT ACAAGCCGGCGCCGCAAACGCCGCACGTCAACCCGGCCGTTGTGCCAACC GGCTGCTGGGAGCACGCCAATGTCTACGCCGTCTACGCCGTCGATGAGCG GCAGGCGAGAGAGGATGAATTCTTGACTTTCTGACTTCAGTTTGGGGAAT CAATCAATCGTCTCGGCGAAGATTTGGGGGCTTCAGATCTTGGATTTCGG CGGCCCCTTTCTCACAACGGTGTACCATAGGCAAGTTCAGTGGAAGTCTC AGCGTCGTTGGGATTTCAGGGGTCTTTGGTAGCAACCTTAAGTGACTTCA GGAATCGTCTCAATTTGAATCTCAGTCGTCTTTCTAACGTTACTTATCTA AAGCTTGGTTTCGCGGTTTCTCTCTCCGCCGTACAATTTTCATTGCTGAG AAAGCGTAGACGTTTTTGGCTCTTGCTGTCCCGCCATGATTTTGAATAAG GCAGGCGCTGGCAGCGCTCAACGCAGAGCCTCGCTTCCTGAGCATGTCTC CGGATACGGGCATTGCCGACCTGGCCACGGAAGAGACATCCGATTCGGTC CGGCGGACGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15404:501..1612+

>mRNA_P-wetherbeei_contig15404.1.1 ID=mRNA_P-wetherbeei_contig15404.1.1|Name=mRNA_P-wetherbeei_contig15404.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig15404:501..1612+ (Phaeothamnion wetherbeei SAG_119_79)
AACTACCACCACGGCGAGCCGGATGAGATAACTGCCGTCTACTGGGGCAC
GGCGCTCGTGCGGGGATACAAGGCGTTTCTGGACATCAAGCAGCCGACGT
GGCGTGAGTACAAGCCGGCGCCGCAAACGCCGCACGTCAACCCGGCCGTT
GTGCCAACCGGCTGCTGGGAGCACGCCAATGTCTACGCCGTCTACGCCGC
GCTGGCAGCGCTCAACGCAGAGCCTCGCTTCCTGAGCATGTCTCCGGATA
CGGGCATTGCCGACCTGGCCACGGAAGAGACATCCGATTCGGTCCGGCGG
ACGGCG
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