mRNA_P-wetherbeei_contig1524.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1524.1.1
Unique NamemRNA_P-wetherbeei_contig1524.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1524.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1524contigP-wetherbeei_contig1524:2..2130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2129
Hectar predicted targeting categoryother localisation
Exons1
Cds size1857
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186049.2198884-CDS-P-wetherbeei_contig1524:1..18581683186049.2198884-CDS-P-wetherbeei_contig1524:1..1858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1524 2..1858 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186049.2303271-UTR-P-wetherbeei_contig1524:1858..21301683186049.2303271-UTR-P-wetherbeei_contig1524:1858..2130Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1524 1859..2130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1524.1.1prot_P-wetherbeei_contig1524.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1524 2..1858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1524.1.1

>prot_P-wetherbeei_contig1524.1.1 ID=prot_P-wetherbeei_contig1524.1.1|Name=mRNA_P-wetherbeei_contig1524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=619bp
MERGGAAVAPVPLYGLSRTASAEDIIMLQRCRGSSRQESSSDLGEKQLHH
SDDGIGPRMIIQPRMPRTQSAGMFDLGKPLQRRHVRCADCADGAPCGCCV
AKDATGYGTQRPNGSAKRMAESLGSDDMNVVTETSGGGAMERSNGGSGGS
GGSGTDVQSQRRPSPMTTDDGDADVDSGDQPRRRRRRVDSGGEERLTPSP
LQGPIPLVCGAPSFAFSPLSSHPGAPLSSSSAGSEMEAFDVAGDEGKGGG
SGGFGGGNGGGRSDGAAATTAAVVAAGAAALAEEDGFLPDMARPDGADGG
LTAMAAAGNGRTQGGSGVAVSSFAGKGSPAEGSDSAAPTAAVSPAAAALA
PTTAAVAAAPSAAATAPSSAAASMADAAARAAGAAAAASTVNPATTAVSM
TAPAVAPAGGMASAAVTPAISPAISPAISAASSHAATGLNGSSGDWVGGR
SAATRRGGRNSKDQGQEAPVQRTTPPPPLAAVAESPFFAAPSAASPAGRG
ADAPGSTNCSQFVGPGPAAASKVATSKAAASKAATAKAAAFAAAAAGAHG
GAAAEHGGNDDGFVHLPGLPAQPHAAAAAAAAAAAAAGTAASVQHHQRIL
TQARARAQALAARAQGAGV
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mRNA from alignment at P-wetherbeei_contig1524:2..2130-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1524.1.1 ID=mRNA_P-wetherbeei_contig1524.1.1|Name=mRNA_P-wetherbeei_contig1524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2129bp|location=Sequence derived from alignment at P-wetherbeei_contig1524:2..2130- (Phaeothamnion wetherbeei SAG_119_79)
CGGCAGGATCCCTCGCATTCGTTTCTGTGCAGATACCTTTCACCACTGCG
ACACCAGTACGCTCAATTTGTTTAAATTGCTCCAGAGCCAGCGCGTCAGG
CTCTCGTTTCCCTTAGTTGTGCTTTAAAAGTATCGAGTTCCCTGGCTTTC
CAGGGCTTTTCATCTCTCTTGCAGCCATCCTCGAGGAGGCCGCAGCAGCC
TTCAAACGAGTATCACCACTCTCCTGCCTGCCGCCATTTACGTGAGCGAT
GCCGCGGTGTTGCTAGCCAAGTATGGAACGAGGTGGGGCCGCAGTGGCGC
CTGTTCCGCTATATGGGCTCTCGAGGACGGCCAGTGCAGAAGACATTATC
ATGCTGCAACGCTGTCGAGGCTCGTCTCGGCAGGAAAGCAGCAGCGATCT
CGGGGAGAAACAATTACACCACTCCGATGACGGGATAGGGCCACGGATGA
TTATTCAGCCCCGCATGCCGCGCACACAGTCGGCAGGGATGTTCGATCTC
GGCAAGCCGTTACAGAGACGCCATGTCAGATGCGCCGACTGTGCGGACGG
GGCGCCTTGCGGGTGCTGCGTCGCAAAAGACGCCACCGGCTACGGAACGC
AGCGCCCGAACGGCTCCGCGAAGCGGATGGCGGAGAGCCTCGGTTCCGAC
GACATGAACGTCGTGACGGAAACCAGCGGCGGCGGCGCCATGGAGAGAAG
CAATGGCGGCAGCGGCGGCAGTGGTGGCAGCGGCACTGATGTGCAATCCC
AGAGAAGGCCGTCGCCAATGACGACGGACGATGGTGACGCCGACGTGGAC
TCAGGCGACCAGCCGCGGCGACGGCGCCGCCGCGTCGATTCCGGCGGTGA
AGAGCGACTGACGCCGTCTCCGTTGCAAGGACCCATTCCGCTCGTCTGCG
GCGCGCCGTCGTTCGCCTTTTCGCCGCTGTCGTCCCACCCGGGGGCGCCT
CTCTCCAGCTCGTCGGCCGGATCGGAAATGGAGGCTTTTGACGTTGCAGG
GGACGAAGGGAAAGGCGGCGGTAGCGGCGGCTTTGGCGGCGGAAATGGTG
GCGGCCGCAGCGATGGGGCTGCCGCCACCACGGCTGCCGTTGTTGCCGCC
GGCGCTGCCGCCCTCGCTGAGGAGGACGGATTCCTTCCGGACATGGCAAG
GCCGGATGGCGCCGACGGCGGCCTCACTGCCATGGCCGCTGCCGGCAACG
GAAGGACGCAAGGTGGCAGCGGAGTGGCGGTGAGCAGTTTTGCGGGGAAA
GGTAGCCCGGCGGAGGGATCTGATTCGGCGGCGCCCACAGCAGCAGTCTC
ACCAGCTGCGGCAGCATTGGCACCAACGACGGCGGCGGTGGCTGCTGCTC
CATCGGCGGCGGCGACGGCACCATCGTCGGCGGCGGCGTCGATGGCTGAC
GCAGCAGCGCGGGCGGCCGGCGCGGCGGCGGCTGCTTCGACAGTGAACCC
AGCGACGACGGCGGTTTCAATGACGGCGCCTGCTGTGGCGCCTGCGGGAG
GCATGGCATCGGCGGCGGTAACGCCGGCGATATCACCGGCGATATCACCG
GCGATCTCTGCGGCGTCTTCGCACGCCGCAACCGGTCTAAACGGCTCGAG
CGGGGATTGGGTCGGCGGTAGGAGCGCCGCAACGCGGCGCGGCGGCCGCA
ATAGCAAGGACCAGGGGCAGGAGGCACCAGTGCAGCGGACAACACCGCCG
CCGCCGCTGGCGGCGGTGGCAGAATCGCCGTTTTTCGCGGCGCCGAGCGC
TGCGTCTCCCGCCGGGCGTGGCGCCGACGCACCAGGCTCGACGAATTGTT
CACAGTTTGTCGGTCCGGGCCCGGCGGCGGCATCAAAGGTGGCGACGTCC
AAGGCTGCGGCGTCGAAGGCTGCAACGGCAAAGGCGGCAGCATTTGCGGC
CGCAGCAGCGGGGGCGCACGGCGGTGCTGCGGCGGAGCACGGCGGGAACG
ACGACGGCTTTGTGCACCTGCCCGGCTTACCGGCCCAACCGCATGCAGCT
GCTGCGGCGGCGGCGGCAGCGGCGGCAGCGGCTGGAACTGCGGCGTCTGT
GCAGCACCACCAACGAATCCTCACACAGGCTCGGGCGCGGGCCCAAGCGC
TGGCGGCGCGGGCCCAAGGTGCCGGCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1524:2..2130-

>mRNA_P-wetherbeei_contig1524.1.1 ID=mRNA_P-wetherbeei_contig1524.1.1|Name=mRNA_P-wetherbeei_contig1524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1857bp|location=Sequence derived from alignment at P-wetherbeei_contig1524:2..2130- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACGAGGTGGGGCCGCAGTGGCGCCTGTTCCGCTATATGGGCTCTC
GAGGACGGCCAGTGCAGAAGACATTATCATGCTGCAACGCTGTCGAGGCT
CGTCTCGGCAGGAAAGCAGCAGCGATCTCGGGGAGAAACAATTACACCAC
TCCGATGACGGGATAGGGCCACGGATGATTATTCAGCCCCGCATGCCGCG
CACACAGTCGGCAGGGATGTTCGATCTCGGCAAGCCGTTACAGAGACGCC
ATGTCAGATGCGCCGACTGTGCGGACGGGGCGCCTTGCGGGTGCTGCGTC
GCAAAAGACGCCACCGGCTACGGAACGCAGCGCCCGAACGGCTCCGCGAA
GCGGATGGCGGAGAGCCTCGGTTCCGACGACATGAACGTCGTGACGGAAA
CCAGCGGCGGCGGCGCCATGGAGAGAAGCAATGGCGGCAGCGGCGGCAGT
GGTGGCAGCGGCACTGATGTGCAATCCCAGAGAAGGCCGTCGCCAATGAC
GACGGACGATGGTGACGCCGACGTGGACTCAGGCGACCAGCCGCGGCGAC
GGCGCCGCCGCGTCGATTCCGGCGGTGAAGAGCGACTGACGCCGTCTCCG
TTGCAAGGACCCATTCCGCTCGTCTGCGGCGCGCCGTCGTTCGCCTTTTC
GCCGCTGTCGTCCCACCCGGGGGCGCCTCTCTCCAGCTCGTCGGCCGGAT
CGGAAATGGAGGCTTTTGACGTTGCAGGGGACGAAGGGAAAGGCGGCGGT
AGCGGCGGCTTTGGCGGCGGAAATGGTGGCGGCCGCAGCGATGGGGCTGC
CGCCACCACGGCTGCCGTTGTTGCCGCCGGCGCTGCCGCCCTCGCTGAGG
AGGACGGATTCCTTCCGGACATGGCAAGGCCGGATGGCGCCGACGGCGGC
CTCACTGCCATGGCCGCTGCCGGCAACGGAAGGACGCAAGGTGGCAGCGG
AGTGGCGGTGAGCAGTTTTGCGGGGAAAGGTAGCCCGGCGGAGGGATCTG
ATTCGGCGGCGCCCACAGCAGCAGTCTCACCAGCTGCGGCAGCATTGGCA
CCAACGACGGCGGCGGTGGCTGCTGCTCCATCGGCGGCGGCGACGGCACC
ATCGTCGGCGGCGGCGTCGATGGCTGACGCAGCAGCGCGGGCGGCCGGCG
CGGCGGCGGCTGCTTCGACAGTGAACCCAGCGACGACGGCGGTTTCAATG
ACGGCGCCTGCTGTGGCGCCTGCGGGAGGCATGGCATCGGCGGCGGTAAC
GCCGGCGATATCACCGGCGATATCACCGGCGATCTCTGCGGCGTCTTCGC
ACGCCGCAACCGGTCTAAACGGCTCGAGCGGGGATTGGGTCGGCGGTAGG
AGCGCCGCAACGCGGCGCGGCGGCCGCAATAGCAAGGACCAGGGGCAGGA
GGCACCAGTGCAGCGGACAACACCGCCGCCGCCGCTGGCGGCGGTGGCAG
AATCGCCGTTTTTCGCGGCGCCGAGCGCTGCGTCTCCCGCCGGGCGTGGC
GCCGACGCACCAGGCTCGACGAATTGTTCACAGTTTGTCGGTCCGGGCCC
GGCGGCGGCATCAAAGGTGGCGACGTCCAAGGCTGCGGCGTCGAAGGCTG
CAACGGCAAAGGCGGCAGCATTTGCGGCCGCAGCAGCGGGGGCGCACGGC
GGTGCTGCGGCGGAGCACGGCGGGAACGACGACGGCTTTGTGCACCTGCC
CGGCTTACCGGCCCAACCGCATGCAGCTGCTGCGGCGGCGGCGGCAGCGG
CGGCAGCGGCTGGAACTGCGGCGTCTGTGCAGCACCACCAACGAATCCTC
ACACAGGCTCGGGCGCGGGCCCAAGCGCTGGCGGCGCGGGCCCAAGGTGC
CGGCGTC
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