mRNA_P-wetherbeei_contig10415.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10415.1.1
Unique NamemRNA_P-wetherbeei_contig10415.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10415.1.1 vs. uniprot
Match: UPI001FE68401 (exopolysaccharide biosynthesis protein n=1 Tax=Azospirillum rugosum TaxID=416170 RepID=UPI001FE68401)

HSP 1 Score: 149 bits (377), Expect = 3.570e-42
Identity = 84/171 (49.12%), Postives = 116/171 (67.84%), Query Frame = 1
Query:   61 ERVRLRDLVAALDDRAFGAAMLLFALPNAVGIGTIPGVSTLFGAPQIFLAVQMILGYAQPKLPEWLLEKSIARGDFETMVDRGVPYLRRVEKFLKPRAQGLTDGVAERALGVVFLILAAIVSLPIPFGNQPPAVAMALIAMGHVARDGAFVVAGCVAGVFAIAIAGAVVAG 573
            ER+ L DL+  L DRAFGA +LL ++PN + +   PG+ST+ G P I +  QM++G  +P LP  +   ++ R  F  +V R  P + R+E+ L+PR   LTDG AER LG+  ++LAA+++LPI FGNQPPA A+ALIA+G + +DGAFV AG  AG+ AIAI  AVV G
Sbjct:    7 ERIALGDLMGILGDRAFGALLLLLSIPNVLPV---PGLSTVTGLPMILIGAQMLMGLDRPWLPRRVAAATVDRDAFLRVVKRAHPTIDRLERHLRPRLPALTDGTAERLLGLAVIVLAAVLALPIVFGNQPPAFAIALIALGLIEKDGAFVAAGLAAGLVAIAIVAAVVLG 174          
BLAST of mRNA_P-wetherbeei_contig10415.1.1 vs. uniprot
Match: UPI00166B44E4 (exopolysaccharide biosynthesis protein n=1 Tax=Tistrella bauzanensis TaxID=657419 RepID=UPI00166B44E4)

HSP 1 Score: 150 bits (379), Expect = 4.150e-42
Identity = 85/182 (46.70%), Postives = 124/182 (68.13%), Query Frame = 1
Query:   25 SEILLALRANAP-ERVRLRDLVAALDDRAFGAAMLLFALPNAVGIGTIPGVSTLFGAPQIFLAVQMILGYAQPKLPEWLLEKSIARGDFETMVDRGVPYLRRVEKFLKPRAQGLTDGVAERALGVVFLILAAIVSLPIPFGNQPPAVAMALIAMGHVARDGAFVVAGCVAGVFAIAIAGAVV 567
            S+IL  L  + P ER+ L+DL A + +RAFGA +LLFALPN + +G IPG+S + GAP +  A+ ++LG   P LP +L  +S  + DF  + DR +P+L R E+ L+PR   L DG AER +G + LIL+ ++ LPIPFGN PPA+A+A+IA+G + RDG  V+ G + G+ ++ +A AVV
Sbjct:   21 SDILRRLIRDWPGERISLQDLTAVMGERAFGALILLFALPNCLPLG-IPGLSAVLGAPIVPFAIGLMLGQRSPWLPAFLGRRSFRKTDFMRVFDRALPWLERAERLLRPRMTFLVDGRAERVMGFLILILSVVLVLPIPFGNNPPAIAIAVIALGLIERDGLTVIVGYLLGLLSVIVASAVV 201          
BLAST of mRNA_P-wetherbeei_contig10415.1.1 vs. uniprot
Match: A0A0Q6XGE7_9BURK (ABC transporter permease n=1 Tax=Rhizobacter sp. Root1221 TaxID=1736433 RepID=A0A0Q6XGE7_9BURK)

HSP 1 Score: 146 bits (368), Expect = 1.260e-40
Identity = 87/202 (43.07%), Postives = 129/202 (63.86%), Query Frame = 1
Query:   10 NARSFSEILLALRANAPE-RVRLRDLVAALDDRAFGAAMLLFALPNAVGIGTIPGVSTLFGAPQIFLAVQMILGYAQPKLPEWLLEKSIARGDFETMVDRGVPYLRRVEKFLKPRAQGLTDGVAERALGVVFLILAAIVSLPIPFGNQPPAVAMALIAMGHVARDGAFVVAGCVAGVFAIAIAGAVVAGGAAVVWLAVTHLF 612
            + R  S++L  + ++    R+ +  L+ ALDDRA  A +L+FALPNA+ +   PG S++ G P +FL  Q+ LG + P LP+++ ++S+AR DF  +V R  P+L R E+ LKPR   +T  V ER +G+V L+LA I+ LPIPFGN  PA A++L+A+G + RDG +V+AG    V AIA+   V+AG      L + HLF
Sbjct:    5 SGRPLSDVLFEIASDTTRPRISIGQLLRALDDRALAALLLIFALPNAIPMP--PGTSSVLGTPLVFLTAQLALGLS-PWLPQFIAKRSVARTDFAAIVVRLAPWLARAERLLKPRLLWITSPVGERVIGLVCLLLAVILVLPIPFGNMLPAAAISLMALGVLERDGVWVIAGLATTVAAIALVAGVLAGMLKAAMLVIAHLF 203          
BLAST of mRNA_P-wetherbeei_contig10415.1.1 vs. uniprot
Match: A0A2T6FIT6_9GAMM (Polysaccharide synthesis protein exod n=1 Tax=Cellvibrio sp. 79 TaxID=1954207 RepID=A0A2T6FIT6_9GAMM)

HSP 1 Score: 146 bits (369), Expect = 1.330e-40
Identity = 77/161 (47.83%), Postives = 112/161 (69.57%), Query Frame = 1
Query:   61 ERVRLRDLVAALDDRAFGAAMLLFALPNAVGIGTIPGVSTLFGAPQIFLAVQMILGYAQPKLPEWLLEKSIARGDFETMVDRGVPYLRRVEKFLKPRAQGLTDGVAERALGVVFLILAAIVSLPIPFGNQPPAVAMALIAMGHVARDGAFVVAGCVAGVFA 543
            ERVR+RD+  +L  R+FG  +L+FALPN++ I  IPGVST+ G P +F+AVQM LG+ +  LP W+ + S++   F+T++ + VP+LRR+EK +KPR   LT+G AER LG   ++LA +++LPIP GN  PA+ +  IA+G +  DG  V+AG   GV A
Sbjct:   34 ERVRVRDITESLGQRSFGFILLIFALPNSLPIIGIPGVSTITGLPMLFVAVQMALGHQRVYLPRWIADSSLSTASFQTLIRKSVPWLRRIEKLMKPRIGFLTNGKAERWLGAFCVLLAFLLALPIPLGNLLPALGILFIALGLIESDGVCVLAGLSIGVAA 194          
BLAST of mRNA_P-wetherbeei_contig10415.1.1 vs. uniprot
Match: A0A3D4Q4Y3_9GAMM (Polysaccharide synthesis protein exod n=1 Tax=Cellvibrio sp. TaxID=1965322 RepID=A0A3D4Q4Y3_9GAMM)

HSP 1 Score: 145 bits (365), Expect = 5.290e-40
Identity = 80/176 (45.45%), Postives = 116/176 (65.91%), Query Frame = 1
Query:   19 SFSEILLALRANA-PERVRLRDLVAALDDRAFGAAMLLFALPNAVGIGTIPGVSTLFGAPQIFLAVQMILGYAQPKLPEWLLEKSIARGDFETMVDRGVPYLRRVEKFLKPRAQGLTDGVAERALGVVFLILAAIVSLPIPFGNQPPAVAMALIAMGHVARDGAFVVAGCVAGVFA 543
            S S +LL   AN   ERVR+RD+  +L  R+FG  +L+FALPN++ I  IPGVST+ G P +F+AVQM LG+ +  LP W+ + S+A  DF+ ++++  P+LRR+EK ++PR   LT G AER LG   ++LA ++ LPIP GN  PA+ +  IA+G +  DG  V+ G   G+ A
Sbjct:   19 SLSSLLLDFAANFHTERVRVRDITESLGQRSFGFILLIFALPNSLPILGIPGVSTITGMPMLFVAVQMALGHQRVYLPRWIADSSLATADFQKLINKVAPWLRRIEKLMRPRIAILTLGSAERWLGAFCVLLAVLLVLPIPLGNLLPALGILFIALGLIESDGVCVLVGIAIGIAA 194          
BLAST of mRNA_P-wetherbeei_contig10415.1.1 vs. uniprot
Match: A0A4R2LRU6_9GAMM (Uncharacterized protein n=1 Tax=Plasticicumulans lactativorans TaxID=1133106 RepID=A0A4R2LRU6_9GAMM)

HSP 1 Score: 144 bits (364), Expect = 5.630e-40
Identity = 81/168 (48.21%), Postives = 118/168 (70.24%), Query Frame = 1
Query:   61 ERVRLRDLVAALDDRAFGAAMLLFALPNAVGIGTIPGVSTLFGAPQIFLAVQMILGYAQPKLPEWLLEKSIARGDFETMVDRGVPYLRRVEKFLKPRAQGLTDGVAERALGVVFLILAAIVSLPIPFGNQPPAVAMALIAMGHVARDGAFVVAGCVAGVFAIAIAGAV 564
            ERVRL DLV+ L +R+FG  +LLFA+PN V +   PG ST+FG P + +++QM+LG+  P +P W LE+SIAR  F  M+D+ +P +R +E++L+PRA   T   AER LG    + A +++LP+P  N PPA+ + L+A+G + RDG  V+AGCVAG+ ++AIA AV
Sbjct:   27 ERVRLGDLVSLLGNRSFGILLLLFAMPNLVPLP--PGSSTVFGIPLMLVSLQMMLGWPTPWMPRWALERSIARNVFVGMLDKVLPRIRWLERWLRPRAVHWTGLRAERVLGGYCALQAFVLALPLPLANLPPALTIVLVALGLMERDGLLVMAGCVAGLLSLAIASAV 192          
BLAST of mRNA_P-wetherbeei_contig10415.1.1 vs. uniprot
Match: A0A3B9IFN6_9PROT (ABC transporter permease n=5 Tax=Tistrella TaxID=171436 RepID=A0A3B9IFN6_9PROT)

HSP 1 Score: 145 bits (366), Expect = 7.680e-40
Identity = 82/182 (45.05%), Postives = 123/182 (67.58%), Query Frame = 1
Query:   25 SEILLALRANAP-ERVRLRDLVAALDDRAFGAAMLLFALPNAVGIGTIPGVSTLFGAPQIFLAVQMILGYAQPKLPEWLLEKSIARGDFETMVDRGVPYLRRVEKFLKPRAQGLTDGVAERALGVVFLILAAIVSLPIPFGNQPPAVAMALIAMGHVARDGAFVVAGCVAGVFAIAIAGAVV 567
            S++L  L  + P ER+ L DL   + DRAF A +LLFALPN + +G IPG+S + GAP +  A+ ++LG   P LP +L  +S  + DF  + ++ +P+L +VE+ LKPR   + +G AER LGV+ +IL+ ++ LPIPFGN PPA+A+++IA+G + RDG  V+ G V G+ + A+A AVV
Sbjct:   47 SDVLKRLIRDWPGERISLHDLTTVMGDRAFAALILLFALPNCLPLG-IPGLSAVLGAPIVPFAIGLMLGQRSPWLPAFLARRSFRKTDFMMVFNKALPWLEKVERLLKPRCAWVIEGKAERLLGVIMVILSIVLVLPIPFGNNPPAIAISVIALGLIERDGLTVLIGYVLGLLSCALAAAVV 227          
BLAST of mRNA_P-wetherbeei_contig10415.1.1 vs. uniprot
Match: UPI00115DDA96 (exopolysaccharide biosynthesis protein n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115DDA96)

HSP 1 Score: 145 bits (365), Expect = 7.820e-40
Identity = 76/167 (45.51%), Postives = 110/167 (65.87%), Query Frame = 1
Query:   64 RVRLRDLVAALDDRAFGAAMLLFALPNAVGIGTIPGVSTLFGAPQIFLAVQMILGYAQPKLPEWLLEKSIARGDFETMVDRGVPYLRRVEKFLKPRAQGLTDGVAERALGVVFLILAAIVSLPIPFGNQPPAVAMALIAMGHVARDGAFVVAGCVAGVFAIAIAGAV 564
            R+ L  + AAL DRA+G   LLFA PN       PG+S + G P I +A Q + G  QP  P WL E+SIAR DF  +++RG+P+L RVE+ LKPR    T   AER + ++ L+LA +++LPIPFGN  PA+A+++IA+G   RDG FV+ G + G+ ++ +AG++
Sbjct:   51 RITLGAVAAALGDRAYGILFLLFAFPNVFPAP--PGMSAVLGMPLILVAAQFVYGRHQPWFPRWLAERSIAREDFALIIERGIPWLHRVERLLKPRLLWATHFSAERTISLLCLVLAVVIALPIPFGNMLPALAISVIALGFFERDGVFVLGGAILGILSLVLAGSI 215          
BLAST of mRNA_P-wetherbeei_contig10415.1.1 vs. uniprot
Match: UPI001FEB1D6D (exopolysaccharide biosynthesis protein n=1 Tax=Azospirillum soli TaxID=1304799 RepID=UPI001FEB1D6D)

HSP 1 Score: 143 bits (361), Expect = 1.060e-39
Identity = 83/170 (48.82%), Postives = 112/170 (65.88%), Query Frame = 1
Query:   64 RVRLRDLVAALDDRAFGAAMLLFALPNAVGIGTIPGVSTLFGAPQIFLAVQMILGYAQPKLPEWLLEKSIARGDFETMVDRGVPYLRRVEKFLKPRAQGLTDGVAERALGVVFLILAAIVSLPIPFGNQPPAVAMALIAMGHVARDGAFVVAGCVAGVFAIAIAGAVVAG 573
            R+ L DL+  L DRAFGA +L+ ++PN + +   PG+ST  G P I +  QM  G  QP LP  +   ++ R  F  +V+R  PY+ RVE+ L  R   LTD VAER LG+  + LA +++LPI FGNQPPA A+ALIA+G + +DGAFV+AG VAG+ AIAI  AV+ G
Sbjct:   13 RIALGDLMGILGDRAFGALLLILSIPNVLPV---PGLSTATGLPMILIGAQMAAGRHQPWLPRRVAAATVDRDSFLRVVNRAQPYIHRVERHLHERLPMLTDPVAERLLGLAVMALALVLALPIVFGNQPPAFAIALIALGLIEKDGAFVIAGLVAGLVAIAIVAAVLLG 179          
BLAST of mRNA_P-wetherbeei_contig10415.1.1 vs. uniprot
Match: UPI001FE94137 (exopolysaccharide biosynthesis protein n=1 Tax=Azospirillum picis TaxID=488438 RepID=UPI001FE94137)

HSP 1 Score: 143 bits (361), Expect = 1.500e-39
Identity = 82/172 (47.67%), Postives = 113/172 (65.70%), Query Frame = 1
Query:   58 PERVRLRDLVAALDDRAFGAAMLLFALPNAVGIGTIPGVSTLFGAPQIFLAVQMILGYAQPKLPEWLLEKSIARGDFETMVDRGVPYLRRVEKFLKPRAQGLTDGVAERALGVVFLILAAIVSLPIPFGNQPPAVAMALIAMGHVARDGAFVVAGCVAGVFAIAIAGAVVAG 573
            P+R+ L +++ AL DRAFG  +L+ ++PN + +   PG+ST  G P I +  QM LG  QP LP  +L     RG F  ++ R  P+  R+E+ L+PR   L    AER LGV  ++LA I++LPI FGNQPPA+A+ALIA+G +  DGAFVVAG +AGV +IAI  AV+ G
Sbjct:   23 PDRISLAEVMDALGDRAFGTLLLILSIPNVLPV---PGLSTATGVPMILIGAQMALGRPQPWLPRRMLAVGFDRGAFLGVIRRAKPWADRLERHLRPRLPALAGPAAERMLGVAVMLLAGILALPIVFGNQPPALAIALIALGLMESDGAFVVAGLIAGVLSIAIIAAVLLG 191          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10415.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FE684013.570e-4249.12exopolysaccharide biosynthesis protein n=1 Tax=Azo... [more]
UPI00166B44E44.150e-4246.70exopolysaccharide biosynthesis protein n=1 Tax=Tis... [more]
A0A0Q6XGE7_9BURK1.260e-4043.07ABC transporter permease n=1 Tax=Rhizobacter sp. R... [more]
A0A2T6FIT6_9GAMM1.330e-4047.83Polysaccharide synthesis protein exod n=1 Tax=Cell... [more]
A0A3D4Q4Y3_9GAMM5.290e-4045.45Polysaccharide synthesis protein exod n=1 Tax=Cell... [more]
A0A4R2LRU6_9GAMM5.630e-4048.21Uncharacterized protein n=1 Tax=Plasticicumulans l... [more]
A0A3B9IFN6_9PROT7.680e-4045.05ABC transporter permease n=5 Tax=Tistrella TaxID=1... [more]
UPI00115DDA967.820e-4045.51exopolysaccharide biosynthesis protein n=1 Tax=Tel... [more]
UPI001FEB1D6D1.060e-3948.82exopolysaccharide biosynthesis protein n=1 Tax=Azo... [more]
UPI001FE941371.500e-3947.67exopolysaccharide biosynthesis protein n=1 Tax=Azo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10415contigP-wetherbeei_contig10415:665..1285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1110502.TMO_0503
PFAMsExoD
Model size621
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.14e-41
EggNOG OGsCOG3932@1|root,COG3932@2|Bacteria,1MZD5@1224|Proteobacteria,2U77X@28211|Alphaproteobacteria,2JT72@204441|Rhodospirillales
DescriptionExopolysaccharide synthesis, ExoD
Cds size621
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185868.470963-CDS-P-wetherbeei_contig10415:664..12851683185868.470963-CDS-P-wetherbeei_contig10415:664..1285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10415 665..1285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10415.1.1prot_P-wetherbeei_contig10415.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10415 665..1285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10415.1.1

>prot_P-wetherbeei_contig10415.1.1 ID=prot_P-wetherbeei_contig10415.1.1|Name=mRNA_P-wetherbeei_contig10415.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=207bp
MTANARSFSEILLALRANAPERVRLRDLVAALDDRAFGAAMLLFALPNAV
GIGTIPGVSTLFGAPQIFLAVQMILGYAQPKLPEWLLEKSIARGDFETMV
DRGVPYLRRVEKFLKPRAQGLTDGVAERALGVVFLILAAIVSLPIPFGNQ
PPAVAMALIAMGHVARDGAFVVAGCVAGVFAIAIAGAVVAGGAAVVWLAV
THLFGG*
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mRNA from alignment at P-wetherbeei_contig10415:665..1285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10415.1.1 ID=mRNA_P-wetherbeei_contig10415.1.1|Name=mRNA_P-wetherbeei_contig10415.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig10415:665..1285+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGCGAACGCCCGCAGCTTCTCCGAAATCCTGCTTGCCCTGCGCGC GAACGCGCCCGAGCGCGTGCGGTTGCGCGATCTCGTCGCGGCCCTCGACG ACCGCGCCTTCGGCGCCGCGATGCTGCTGTTCGCGCTACCCAATGCGGTC GGGATCGGCACGATCCCGGGCGTTTCGACGCTGTTCGGAGCGCCGCAGAT CTTTCTCGCGGTCCAGATGATCCTCGGCTACGCGCAGCCGAAGCTGCCCG AGTGGCTGCTGGAGAAATCAATCGCGCGCGGCGATTTCGAGACGATGGTC GATCGCGGCGTACCCTATCTGCGGCGCGTCGAGAAGTTCCTGAAGCCGCG CGCGCAGGGGCTGACCGACGGGGTCGCCGAGCGCGCACTCGGCGTCGTTT TCCTGATCCTCGCGGCAATCGTTTCGCTGCCGATCCCGTTCGGCAACCAG CCGCCGGCCGTGGCGATGGCGCTGATCGCGATGGGCCATGTCGCGCGCGA CGGCGCGTTCGTCGTCGCCGGCTGCGTGGCGGGCGTGTTCGCGATCGCGA TCGCCGGGGCCGTCGTCGCCGGCGGGGCGGCGGTCGTGTGGCTGGCGGTC ACGCACCTGTTCGGAGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10415:665..1285+

>mRNA_P-wetherbeei_contig10415.1.1 ID=mRNA_P-wetherbeei_contig10415.1.1|Name=mRNA_P-wetherbeei_contig10415.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig10415:665..1285+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGCGAACGCCCGCAGCTTCTCCGAAATCCTGCTTGCCCTGCGCGC
GAACGCGCCCGAGCGCGTGCGGTTGCGCGATCTCGTCGCGGCCCTCGACG
ACCGCGCCTTCGGCGCCGCGATGCTGCTGTTCGCGCTACCCAATGCGGTC
GGGATCGGCACGATCCCGGGCGTTTCGACGCTGTTCGGAGCGCCGCAGAT
CTTTCTCGCGGTCCAGATGATCCTCGGCTACGCGCAGCCGAAGCTGCCCG
AGTGGCTGCTGGAGAAATCAATCGCGCGCGGCGATTTCGAGACGATGGTC
GATCGCGGCGTACCCTATCTGCGGCGCGTCGAGAAGTTCCTGAAGCCGCG
CGCGCAGGGGCTGACCGACGGGGTCGCCGAGCGCGCACTCGGCGTCGTTT
TCCTGATCCTCGCGGCAATCGTTTCGCTGCCGATCCCGTTCGGCAACCAG
CCGCCGGCCGTGGCGATGGCGCTGATCGCGATGGGCCATGTCGCGCGCGA
CGGCGCGTTCGTCGTCGCCGGCTGCGTGGCGGGCGTGTTCGCGATCGCGA
TCGCCGGGGCCGTCGTCGCCGGCGGGGCGGCGGTCGTGTGGCTGGCGGTC
ACGCACCTGTTCGGAGGCTGA
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