mRNA_P-wetherbeei_contig15132.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15132.2.1
Unique NamemRNA_P-wetherbeei_contig15132.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15132.2.1 vs. uniprot
Match: UPI0010738E43 (flagellar biosynthesis repressor FlbT n=1 Tax=Terasakiella sp. SH-1 TaxID=2560057 RepID=UPI0010738E43)

HSP 1 Score: 80.9 bits (198), Expect = 2.150e-17
Identity = 36/94 (38.30%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 EEAATPAMRVYYTLQCVYLFPDEAKVYSDALRQFLTDFELAAPGSKAITDGLRARLDKGELYPGLKDAKRLIKFEWDLLGTTTERARQLLMGSD 282
            EEA TPA R+Y++LQ +YLFP++ ++Y   L   L D+E AAP + +I + +R ++D G+ YP L+ A+ +I+ E  +L        +L  G+D
Sbjct:   48 EEACTPASRIYFSLQGLYLFPEKRELYFQNLNDLLKDYESAAPSANSIIEEVREKIDNGDYYPALRKAREIIEHEGKILSNVQATITELRHGAD 141          
BLAST of mRNA_P-wetherbeei_contig15132.2.1 vs. uniprot
Match: A0A7C1Y956_9PROT (Flagellum biosynthesis protein FlbT n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A7C1Y956_9PROT)

HSP 1 Score: 80.9 bits (198), Expect = 2.200e-17
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 EEAATPAMRVYYTLQCVYLFPDEAKVYSDALRQFLTDFELAAPGSKAITDGLRARLDKGELYPGLKDAKRLIKFEWDLLGTTTER 255
            EEA TPA R+YY+LQC+YLFP++ K Y     +F++ +  AAP S++I D LR  +D GELY  L+  ++LI  E ++L    E+
Sbjct:   48 EEATTPASRIYYSLQCLYLFPEKEKSYLPRFYEFISSYLKAAPSSQSIMDKLRKLVDNGELYQALRLGQKLIAHEREVLSHVQEK 132          
BLAST of mRNA_P-wetherbeei_contig15132.2.1 vs. uniprot
Match: A0A850KBG9_9HYPH (Flagellar biosynthesis repressor FlbT n=1 Tax=Methylocystaceae bacterium TaxID=2052174 RepID=A0A850KBG9_9HYPH)

HSP 1 Score: 78.6 bits (192), Expect = 1.280e-16
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 EEAATPAMRVYYTLQCVYLFPDEAKVYSDALRQFLTDFELAAPGSKAITDGLRARLDKGELYPGLKDAKRLIKFEWDLLGTTTERARQL 267
            E+A TPA R+Y+ +QC+YLFPD+ + YS  + Q L D++ AA   K IT  +R  L +GE Y  L+ A+ LI+ E  +LG   E   +L
Sbjct:   48 EDACTPASRIYFNVQCLYLFPDDKEKYSQNVNQLLKDYDDAAASGKPITYAIRDFLLQGEYYAALRQARELIEHESKVLGNVQEPVAEL 136          
BLAST of mRNA_P-wetherbeei_contig15132.2.1 vs. uniprot
Match: A0A317ECJ9_9PROT (Flagellum biosynthesis protein FlbT n=1 Tax=Zavarzinia aquatilis TaxID=2211142 RepID=A0A317ECJ9_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 3.640e-16
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 EEAATPAMRVYYTLQCVYLFPDEAKVYSDALRQFLTDFELAAPGSKAITDGLRARLDKGELYPGLKDAKRLIKFEWDLLGTTTERARQLL 270
            ++A TPA R+YY LQC+YLFPD A  Y  A   FL D+  AAP   AI D +  +L  G +Y  L+ AK+L+  E ++L   ++ A   L
Sbjct:   47 DDAVTPATRIYYVLQCLYLFPDRAADYRKAADAFLADYAAAAPSGAAIIDTINKQLATGTVYQALRTAKKLLVHEKEVLDHVSDPASSRL 136          
BLAST of mRNA_P-wetherbeei_contig15132.2.1 vs. uniprot
Match: A0A418WAX3_9PROT (Flagellum biosynthesis protein FlbT n=2 Tax=Oleomonas cavernae TaxID=2320859 RepID=A0A418WAX3_9PROT)

HSP 1 Score: 75.5 bits (184), Expect = 2.430e-15
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 EEAATPAMRVYYTLQCVYLFPDEAKVYSDALRQFLTDFELAAPGSKAITDGLRARLDKGELYPGLKDAKRLIKFEWDLLGTTTERA 258
            E+A TPA R+YY LQC+YLFPD A  Y  A + FL D+  AAP + A    +  +L   ++YP LK AK+L+  E ++     + A
Sbjct:   54 EDAQTPATRIYYVLQCLYLFPDRAADYQAAAKGFLADYAAAAPSAAATIAEITEQLATRQIYPALKTAKKLLAHEKEIFAHVPDPA 139          
BLAST of mRNA_P-wetherbeei_contig15132.2.1 vs. uniprot
Match: A0A2E4AWH1_9ACTN (Flagellum biosynthesis protein FlbT n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2E4AWH1_9ACTN)

HSP 1 Score: 74.3 bits (181), Expect = 6.410e-15
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 1
Query:    1 EEAATPAMRVYYTLQCVYLFPDEAKVYSDALRQFLTDFELAAPGSKAITDGLRARLDKGELYPGLKDAKRLIKFEWDLL 237
            E++ TPA RVY+ LQC Y+FP     Y  +   FL ++  A P +K I D +R  ++ G LY GLK A++LI+ E +LL
Sbjct:   47 EDSNTPASRVYFALQCAYIFPQNEMEYKSSFNNFLEEYLTACPSAKPIADEIRDNVEGGRLYNGLKVAQKLIEHEGELL 125          
BLAST of mRNA_P-wetherbeei_contig15132.2.1 vs. uniprot
Match: A0A7W9ZD25_NOVIT (Flagellar protein FlbT n=2 Tax=Novispirillum itersonii TaxID=189 RepID=A0A7W9ZD25_NOVIT)

HSP 1 Score: 73.6 bits (179), Expect = 1.310e-14
Identity = 32/94 (34.04%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 EEAATPAMRVYYTLQCVYLFPDEAKVYSDALRQFLTDFELAAPGSKAITDGLRARLDKGELYPGLKDAKRLIKFEWDLLGTTTERARQLLMGSD 282
            ++A TPA R+YY LQC+Y+FP+E++ Y    ++F+  +  AAP ++ I D L+ ++  G ++  +K A++LI  E ++L    +   Q L   D
Sbjct:   48 DDARTPATRIYYALQCLYIFPEESEQYKAIFKRFVEPYVEAAPSARPIIDELQQQVQGGHIFQAMKTARKLIAHEGEVLRNVEQNLAQTLRRPD 141          
BLAST of mRNA_P-wetherbeei_contig15132.2.1 vs. uniprot
Match: A0A143DAY2_9PROT (Uncharacterized protein n=2 Tax=Haematospirillum TaxID=1804663 RepID=A0A143DAY2_9PROT)

HSP 1 Score: 73.9 bits (180), Expect = 1.370e-14
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    1 EEAATPAMRVYYTLQCVYLFPDEAKVYSDALRQFLTDFELAAPGSKAITDGLRARLDKGELYPGLKDAKRLIKFEWDLLGTTTERARQLLMGSD 282
            +EA TPA RVYY LQCVYLFP++   +    + FLT F  A P S+ I + + A +   + +  LK A+RLI  E D+L    +R  + L  SD
Sbjct:   62 DEAITPATRVYYALQCVYLFPEDRSRHLILFKDFLTSFTDAVPSSREIAEEIFALVGDEDYFKALKVARRLITHEGDILRHVEQRLAEELQHSD 155          
BLAST of mRNA_P-wetherbeei_contig15132.2.1 vs. uniprot
Match: A0A7Y7D236_9HYPH (Flagellar biosynthesis repressor FlbT n=1 Tax=Methylocystaceae bacterium TaxID=2052174 RepID=A0A7Y7D236_9HYPH)

HSP 1 Score: 73.6 bits (179), Expect = 1.540e-14
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 EEAATPAMRVYYTLQCVYLFPDEAKVYSDALRQFLTDFELAAPGSKAITDGLRARLDKGELYPGLKDAKRLIKFEWDLLGTTTERARQLL 270
            EEA TPA RVY+ +Q +YLFPD+ + Y   + QFL D+E AA  +  IT  +R  L  GE Y  LK A+ LI+ E  +L    E   +LL
Sbjct:   48 EEACTPASRVYFNVQGMYLFPDKREQYYQNVNQFLEDYERAAKSALPITYAIREALLDGEFYSALKQARHLIEHENKVLCNVQESDPELL 137          
BLAST of mRNA_P-wetherbeei_contig15132.2.1 vs. uniprot
Match: A0A7C1UHH0_9PROT (Flagellum biosynthesis protein FlbT n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A7C1UHH0_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 3.150e-14
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 EEAATPAMRVYYTLQCVYLFPDEAKVYSDALRQFLTDFELAAPGSKAITDGLRARLDKGELYPGLKDAKRLIKFEWDLLGTTTERARQLL 270
            EEA TPA R YYTLQC+YLFP++ +       ++L ++  AAP S+ + D L+  +++G+ Y  LK  + LI  E  +L    +R  + L
Sbjct:   48 EEAVTPAARAYYTLQCLYLFPEDEEANLPRFNEYLDNYVKAAPSSRELVDDLKRLVEEGKFYQALKKCRELIAHEQKVLEHVQKRVGEKL 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15132.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0010738E432.150e-1738.30flagellar biosynthesis repressor FlbT n=1 Tax=Tera... [more]
A0A7C1Y956_9PROT2.200e-1744.71Flagellum biosynthesis protein FlbT n=1 Tax=Rhodos... [more]
A0A850KBG9_9HYPH1.280e-1642.70Flagellar biosynthesis repressor FlbT n=1 Tax=Meth... [more]
A0A317ECJ9_9PROT3.640e-1642.22Flagellum biosynthesis protein FlbT n=1 Tax=Zavarz... [more]
A0A418WAX3_9PROT2.430e-1541.86Flagellum biosynthesis protein FlbT n=2 Tax=Oleomo... [more]
A0A2E4AWH1_9ACTN6.410e-1543.04Flagellum biosynthesis protein FlbT n=1 Tax=Actino... [more]
A0A7W9ZD25_NOVIT1.310e-1434.04Flagellar protein FlbT n=2 Tax=Novispirillum iters... [more]
A0A143DAY2_9PROT1.370e-1441.49Uncharacterized protein n=2 Tax=Haematospirillum T... [more]
A0A7Y7D236_9HYPH1.540e-1444.44Flagellar biosynthesis repressor FlbT n=1 Tax=Meth... [more]
A0A7C1UHH0_9PROT3.150e-1437.78Flagellum biosynthesis protein FlbT n=1 Tax=Rhodos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15132contigP-wetherbeei_contig15132:1358..1639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1430440.MGMSRv2_2475
PFAMsFlbT
Model size282
Max annot lvl204441|Rhodospirillales
KEGG koko:K06601
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.09e-08
EggNOG OGsCOG5443@1|root,COG5443@2|Bacteria,1RD3V@1224|Proteobacteria,2U7PK@28211|Alphaproteobacteria,2JTX9@204441|Rhodospirillales
DescriptionFlagellar protein FlbT
Cds size261
COG categoryN
BRITEko00000,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186045.904642-CDS-P-wetherbeei_contig15132:1357..16181683186045.904642-CDS-P-wetherbeei_contig15132:1357..1618Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15132 1358..1618 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186045.9152772-UTR-P-wetherbeei_contig15132:1618..16391683186045.9152772-UTR-P-wetherbeei_contig15132:1618..1639Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15132 1619..1639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15132.2.1prot_P-wetherbeei_contig15132.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15132 1358..1618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15132.2.1

>prot_P-wetherbeei_contig15132.2.1 ID=prot_P-wetherbeei_contig15132.2.1|Name=mRNA_P-wetherbeei_contig15132.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MRVYYTLQCVYLFPDEAKVYSDALRQFLTDFELAAPGSKAITDGLRARLD
KGELYPGLKDAKRLIKFEWDLLGTTTERARQLLMGSD
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mRNA from alignment at P-wetherbeei_contig15132:1358..1639-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15132.2.1 ID=mRNA_P-wetherbeei_contig15132.2.1|Name=mRNA_P-wetherbeei_contig15132.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig15132:1358..1639- (Phaeothamnion wetherbeei SAG_119_79)
GAAGAGGCCGCCACGCCGGCCATGCGGGTCTATTACACGCTGCAGTGCGT CTACCTGTTCCCGGACGAGGCGAAGGTCTATTCGGACGCGCTGCGCCAGT TCCTGACCGATTTCGAACTGGCCGCCCCGGGCTCGAAGGCGATCACCGAC GGGCTGCGCGCGCGGCTCGACAAGGGCGAGCTCTATCCGGGCCTGAAGGA CGCAAAGCGGCTTATCAAGTTCGAGTGGGATCTCCTTGGAACGACTACGG AAAGAGCCCGCCAGCTGCTGATGGGAAGCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15132:1358..1639-

>mRNA_P-wetherbeei_contig15132.2.1 ID=mRNA_P-wetherbeei_contig15132.2.1|Name=mRNA_P-wetherbeei_contig15132.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig15132:1358..1639- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGTCTATTACACGCTGCAGTGCGTCTACCTGTTCCCGGACGAGGC
GAAGGTCTATTCGGACGCGCTGCGCCAGTTCCTGACCGATTTCGAACTGG
CCGCCCCGGGCTCGAAGGCGATCACCGACGGGCTGCGCGCGCGGCTCGAC
AAGGGCGAGCTCTATCCGGGCCTGAAGGACGCAAAGCGGCTTATCAAGTT
CGAGTGGGATCTCCTTGGAACGACTACGGAAAGAGCCCGCCAGCTGCTGA
TGGGAAGCGAC
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