mRNA_P-wetherbeei_contig14997.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14997.1.1
Unique NamemRNA_P-wetherbeei_contig14997.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14997.1.1 vs. uniprot
Match: A0A3C0TYI2_9PROT (Disulfide bond formation protein B n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYI2_9PROT)

HSP 1 Score: 174 bits (442), Expect = 3.350e-53
Identity = 88/137 (64.23%), Postives = 106/137 (77.37%), Query Frame = 1
Query:   31 NGAVLLGAYGFEIIGGLAPCQLCYYQRIPYVMAIILCAGALLRPAMAQVISAVLMINYMAGAGLGIYHAGVEWHWWAGPATCSAGAGSGGS---VEALMAQILAAPVVRCDEIPWSLFGISLAGYNVLISAGLLALS 432
            + A+LLGAYGFE +GGLAPCQLCYYQRIP+ +A++LCA  LLRPA  + I A+L + Y     LG+YHAG+EW WW GPA+CSA  G GG+   +E LMAQ+ AAPVVRCD  PW+LFG+SLAGYN L S GLLALS
Sbjct:   15 SAALLLGAYGFEFLGGLAPCQLCYYQRIPHGVAVVLCAIVLLRPARRREILALLSLVYAISTALGVYHAGIEWQWWPGPASCSAAGGWGGASATLEELMAQLSAAPVVRCDAAPWTLFGLSLAGYNALFSFGLLALS 151          
BLAST of mRNA_P-wetherbeei_contig14997.1.1 vs. uniprot
Match: A0A3D3UDZ6_9PROT (Disulfide bond formation protein B n=5 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3UDZ6_9PROT)

HSP 1 Score: 163 bits (412), Expect = 7.100e-49
Identity = 83/136 (61.03%), Postives = 100/136 (73.53%), Query Frame = 1
Query:   37 AVLLGAYGFEIIGGLAPCQLCYYQRIPYVMAIILCAGALLRPAMAQVISAVLMINYMAGAGLGIYHAGVEWHWWAGPATCSAGAGSGGSVEALMAQILAAPVVRCDEIPWSLFGISLAGYNVLISAGLLALSAYVF 444
            AVLLGAYGFE IGGL PC LCYYQR+PY +AIIL   A LRPA+ +   A L + ++  AGLG YHAGVE  WW GP  CS G     S++AL+A++LA PVV CDEIPWSLFG+SLAGYN+LISA L   +A ++
Sbjct:    8 AVLLGAYGFEYIGGLRPCTLCYYQRLPYALAIILGFAAFLRPALNRPGLAALTLTFVVSAGLGAYHAGVEQKWWPGPQGCSTGGNKAQSIDALLAELLATPVVMCDEIPWSLFGLSLAGYNMLISAALAVFTAAIW 143          
BLAST of mRNA_P-wetherbeei_contig14997.1.1 vs. uniprot
Match: A0A1H7DZ31_9RHOB (Disulfide bond formation protein DsbB n=1 Tax=Cribrihabitans marinus TaxID=1227549 RepID=A0A1H7DZ31_9RHOB)

HSP 1 Score: 137 bits (346), Expect = 7.860e-39
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 1
Query:   31 NGAVLLGAYGFEIIGGLAPCQLCYYQRIPYVMAIILCAGALLRPAMAQVISAVLMINYMAGAGLGIYHAGVEWHWWAGPATCSAGAGSGGSVEALMAQILAAPVVRCDEIPWSLFGISLAGYNVLISAGLLAL 429
            + A+LLGA+GF+ +GGLAPC+LCY+QR P+ +A +L   AL  P  A  +   L    +A AG+G +HAGVE  WW+GP+TCS+G   G S E LM QI+AAP+VRCD+IPW + GIS+AG+N LIS GL  L
Sbjct:   15 SAALLLGAWGFQYLGGLAPCKLCYWQRYPHAVAALLGLAALALPGRALPLLGALAA--LATAGIGAFHAGVEQGWWSGPSTCSSGPVGGLSAEELMDQIMAAPLVRCDDIPWEMLGISMAGWNALISLGLAGL 145          
BLAST of mRNA_P-wetherbeei_contig14997.1.1 vs. uniprot
Match: UPI001ADD543D (disulfide bond formation protein B n=1 Tax=Ruegeria sp. R13_0 TaxID=2821099 RepID=UPI001ADD543D)

HSP 1 Score: 132 bits (331), Expect = 1.520e-36
Identity = 70/136 (51.47%), Postives = 100/136 (73.53%), Query Frame = 1
Query:   31 NGAVLLGAYGFEIIGGLAPCQLCYYQRIPYVMAIILCAGALLRPAMAQVISAVLMINYMAG---AGLGIYHAGVEWHWWAGPATCSAGAGSGGSVEALMAQILAAPVVRCDEIPWSLFGISLAGYNVLISAGLLAL 429
            + A+LLGA+GF+ IGGLAPC++C +QR P+V+A+++ A AL+ P +    + + +I  +A    AG+G +HAGVE  WW GP+TC++G   G S E LM QI+AAP+VRCDEIPW +FG+S+AG+N  ISA L+ L
Sbjct:   15 SAALLLGAWGFQHIGGLAPCKMCIWQRYPHVVAVVIGALALMLPKL----NPLPLIGALAAIITAGIGFFHAGVEQGWWEGPSTCTSGDIGGLSAEELMNQIMAAPLVRCDEIPWEMFGLSMAGWNAAISAVLVLL 146          
BLAST of mRNA_P-wetherbeei_contig14997.1.1 vs. uniprot
Match: UPI00110D9D04 (disulfide bond formation protein B n=1 Tax=Ruegeria sediminis TaxID=2583820 RepID=UPI00110D9D04)

HSP 1 Score: 131 bits (330), Expect = 2.090e-36
Identity = 65/140 (46.43%), Postives = 100/140 (71.43%), Query Frame = 1
Query:    1 RQIITVMLLMNGAVLLGAYGFEIIGGLAPCQLCYYQRIPYVMAIILCAGALLRPAMAQVISAVLMINYMAGAGLGIYHAGVEWHWWAGPATCSAGAGSGGSVEALMAQILAAPVVRCDEIPWSLFGISLAGYNVLISAGL 420
            + +I + +L + A+LLGA+GF+ +GG+APC+LC +QR P+  A+++ A AL  PA+ +++     +  +  AG+G YH GVE  WW GP+TCS+G   G S + L+ QI+AAP+VRCDE+PW +FG+S+A +N +IS GL
Sbjct:    5 KSLILLAMLGSAAMLLGAWGFQYLGGMAPCKLCIWQRYPHGAAVLIGAAALAAPAI-RLLPLAGALAALTTAGIGFYHTGVERGWWEGPSTCSSGDIGGLSTQQLLDQIMAAPLVRCDEVPWEMFGLSMASWNAVISIGL 143          
BLAST of mRNA_P-wetherbeei_contig14997.1.1 vs. uniprot
Match: A0A2M7QNX3_9RHOB (Disulfide bond formation protein B n=3 Tax=unclassified Rhodobacterales TaxID=285892 RepID=A0A2M7QNX3_9RHOB)

HSP 1 Score: 131 bits (330), Expect = 2.570e-36
Identity = 73/135 (54.07%), Postives = 91/135 (67.41%), Query Frame = 1
Query:   31 NGAVLLGAYGFEIIGGLAPCQLCYYQRIPYVMAIILCAGALLRPAMAQVISAVLMINYMAGAGLGIYHAGVEWHWWAGPATCSAGAGSGGSVEALMAQILAAPVVRCDEIPWSLFGISLAGYNVLISAGLLALSA 435
            + A LL A GF+ IGGLAPC++C +QR P+  AIIL  GAL      +   A+  +  + GAGLG+ H GVE HWW G  TCSA    G S E L+AQI+AAP+VRCDEI WSLFG+S+AG+N L+S GL  L A
Sbjct:   19 SAATLLAALGFQFIGGLAPCEMCLWQRWPHGAAIIL--GALAAALGWRAAMALGALAMLIGAGLGVMHVGVEQHWWTGITTCSAAPVGGLSAEQLLAQIMAAPLVRCDEIAWSLFGVSMAGWNALLSLGLAGLFA 151          
BLAST of mRNA_P-wetherbeei_contig14997.1.1 vs. uniprot
Match: UPI001D09B38E (disulfide bond formation protein B n=1 Tax=Roseobacter sp. H9 TaxID=2763262 RepID=UPI001D09B38E)

HSP 1 Score: 129 bits (325), Expect = 1.130e-35
Identity = 71/143 (49.65%), Postives = 98/143 (68.53%), Query Frame = 1
Query:    1 RQIITVMLLMNGAVLLGAYGFEIIGGLAPCQLCYYQRIPYVMAIILCAGALLRPAMAQVISAVLMINYMAGA---GLGIYHAGVEWHWWAGPATCSAGAGSGGSVEALMAQILAAPVVRCDEIPWSLFGISLAGYNVLISAGL 420
            RQ + +  + +G +L GAY F+ +GG+APCQ+C +QR P+ +A+    GAL   A+      +L+I  +A A   G+G YH GVE  WW GP++CSAGA  G S EAL+ QILAAP+VRCDEIPW +FG+S+AG+N +IS  L
Sbjct:    4 RQTLLIAFMGSGLLLAGAYAFQHLGGMAPCQMCIWQRYPHGIAV--AVGAL---ALTVRQKGLLVIGALAAATTSGIGFYHMGVEQGWWQGPSSCSAGAIDGISAEALLDQILAAPLVRCDEIPWQMFGLSMAGWNAVISLAL 141          
BLAST of mRNA_P-wetherbeei_contig14997.1.1 vs. uniprot
Match: A0A0X3U2B5_9RHOB (Dihydroneopterin aldolase n=2 Tax=Ruegeria profundi TaxID=1685378 RepID=A0A0X3U2B5_9RHOB)

HSP 1 Score: 129 bits (325), Expect = 1.600e-35
Identity = 70/150 (46.67%), Postives = 108/150 (72.00%), Query Frame = 1
Query:    1 RQIITVMLLMNGA--VLLGAYGFEIIGGLAPCQLCYYQRIPYVMAIILCAGALLRPAMAQVISAVLMINYMAGAGLGIYHAGVEWHWWAGPATCSAGAGSGGSVEALMAQILAAPVVRCDEIPWSLFGISLAGYNVLISA--GLLALSAY 438
            R+   V++ M+G+  +LLGA+GF+ +GGLAPC++C +QR P+  AI++ A AL  P  A ++  +  +  +  AG+G++HAGVE  WW GP++CSAG   G S + LM QI++AP+VRCDEIPW +FG+S+AG+N ++S   GLL ++A+
Sbjct:    3 RESTLVLIAMSGSAVLLLGAWGFQYLGGLAPCKMCIWQRYPHGAAILIGALALTLPR-ANLLPLLGALAALTTAGIGVFHAGVEQRWWEGPSSCSAGDIGGLSAQELMDQIMSAPLVRCDEIPWQMFGLSMAGWNAVLSGVLGLLWIAAW 151          
BLAST of mRNA_P-wetherbeei_contig14997.1.1 vs. uniprot
Match: UPI001CAA400F (disulfide bond formation protein B n=1 Tax=Ruegeria sp. SCSIO 43209 TaxID=2793010 RepID=UPI001CAA400F)

HSP 1 Score: 129 bits (324), Expect = 1.690e-35
Identity = 71/143 (49.65%), Postives = 99/143 (69.23%), Query Frame = 1
Query:    1 RQIITVMLLMNGAVLLGAYGFEIIGGLAPCQLCYYQRIPYVMAIILCAGALLRPAMAQVISAVLMINYMAGA---GLGIYHAGVEWHWWAGPATCSAGAGSGGSVEALMAQILAAPVVRCDEIPWSLFGISLAGYNVLISAGL 420
            R ++ V    + A+LLGA+GF+ IGGLAPC++C +QR P+ +A+IL A A   P     +  + ++  +A A   G+G YHAGVE  WW GP+TC++G   G S E LM QI++AP+VRCD+IPW +FGIS+AG+N LIS GL
Sbjct:    5 RLLVLVAASGSAALLLGAWGFQYIGGLAPCKMCIWQRYPHGVAVILGALAFAFPG----VRPLPLLGALAAATTAGIGFYHAGVEQGWWEGPSTCTSGDIRGLSAEELMDQIMSAPLVRCDDIPWEMFGISMAGWNGLISTGL 143          
BLAST of mRNA_P-wetherbeei_contig14997.1.1 vs. uniprot
Match: A0A0C1JIU5_9RHOB (Dihydroneopterin aldolase n=1 Tax=Ruegeria sp. ANG-R TaxID=1577903 RepID=A0A0C1JIU5_9RHOB)

HSP 1 Score: 127 bits (320), Expect = 6.440e-35
Identity = 69/133 (51.88%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   31 NGAVLLGAYGFEIIGGLAPCQLCYYQRIPYVMAIILCAGALLRPAMAQVISAVLMINYMAGA---GLGIYHAGVEWHWWAGPATCSAGAGSGGSVEALMAQILAAPVVRCDEIPWSLFGISLAGYNVLISAGL 420
            + A+LL A+GF+ IGGLAPC++C +QR P+  AIIL   A   P     +  + ++  +A A   G+G YHAGVE  WW GP+TC++G   G S E LM QI++AP+VRCDEIPW +FGIS+AG+N L+SAGL
Sbjct:   13 SAALLLSAWGFQYIGGLAPCKMCIWQRYPHGAAIILGLLAFAFPG----VRPLPLLGALAAATTAGVGFYHAGVEQGWWEGPSTCTSGDIGGLSAEELMKQIMSAPLVRCDEIPWQMFGISMAGWNALLSAGL 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14997.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TYI2_9PROT3.350e-5364.23Disulfide bond formation protein B n=1 Tax=Alphapr... [more]
A0A3D3UDZ6_9PROT7.100e-4961.03Disulfide bond formation protein B n=5 Tax=Alphapr... [more]
A0A1H7DZ31_9RHOB7.860e-3954.14Disulfide bond formation protein DsbB n=1 Tax=Crib... [more]
UPI001ADD543D1.520e-3651.47disulfide bond formation protein B n=1 Tax=Ruegeri... [more]
UPI00110D9D042.090e-3646.43disulfide bond formation protein B n=1 Tax=Ruegeri... [more]
A0A2M7QNX3_9RHOB2.570e-3654.07Disulfide bond formation protein B n=3 Tax=unclass... [more]
UPI001D09B38E1.130e-3549.65disulfide bond formation protein B n=1 Tax=Roseoba... [more]
A0A0X3U2B5_9RHOB1.600e-3546.67Dihydroneopterin aldolase n=2 Tax=Ruegeria profund... [more]
UPI001CAA400F1.690e-3549.65disulfide bond formation protein B n=1 Tax=Ruegeri... [more]
A0A0C1JIU5_9RHOB6.440e-3551.88Dihydroneopterin aldolase n=1 Tax=Ruegeria sp. ANG... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14997contigP-wetherbeei_contig14997:70..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog351016.RAZWK3B_17098
Preferred namedsbB
PFAMsDsbB
Model size444
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03611
KEGG TC5.A.2.1
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.16e-36
EggNOG OGsCOG1495@1|root,COG1495@2|Bacteria,1N89I@1224|Proteobacteria,2UF49@28211|Alphaproteobacteria,2P3CC@2433|Roseobacter
DescriptionCOG1495 Disulfide bond formation protein DsbB
Cds size426
COG categoryC
BRITEko00000,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186039.6361203-UTR-P-wetherbeei_contig14997:69..871683186039.6361203-UTR-P-wetherbeei_contig14997:69..87Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14997 70..87 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186039.6476111-CDS-P-wetherbeei_contig14997:87..5131683186039.6476111-CDS-P-wetherbeei_contig14997:87..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14997 88..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14997.1.1prot_P-wetherbeei_contig14997.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14997 88..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14997.1.1

>prot_P-wetherbeei_contig14997.1.1 ID=prot_P-wetherbeei_contig14997.1.1|Name=mRNA_P-wetherbeei_contig14997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MLLMNGAVLLGAYGFEIIGGLAPCQLCYYQRIPYVMAIILCAGALLRPAM
AQVISAVLMINYMAGAGLGIYHAGVEWHWWAGPATCSAGAGSGGSVEALM
AQILAAPVVRCDEIPWSLFGISLAGYNVLISAGLLALSAYVF
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mRNA from alignment at P-wetherbeei_contig14997:70..513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14997.1.1 ID=mRNA_P-wetherbeei_contig14997.1.1|Name=mRNA_P-wetherbeei_contig14997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig14997:70..513+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCAAATTATAACCGTCATGCTGCTGATGAATGGCGCGGTGCTGCTGGG CGCCTATGGTTTTGAAATCATTGGCGGACTGGCCCCCTGTCAGCTATGTT ATTATCAGCGTATTCCATATGTGATGGCGATCATTCTGTGTGCGGGGGCC CTGCTTAGGCCCGCAATGGCACAGGTAATATCCGCTGTTTTAATGATCAA TTATATGGCTGGCGCCGGACTGGGAATCTATCATGCGGGCGTTGAATGGC ATTGGTGGGCGGGACCGGCGACCTGTAGCGCAGGCGCGGGTTCGGGCGGT TCTGTAGAGGCGCTCATGGCGCAAATACTGGCGGCGCCCGTTGTGCGTTG TGATGAAATTCCATGGTCTCTGTTCGGAATTTCTCTGGCCGGATATAATG TGCTGATTTCCGCCGGCCTGTTGGCGCTGTCGGCATATGTTTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14997:70..513+

>mRNA_P-wetherbeei_contig14997.1.1 ID=mRNA_P-wetherbeei_contig14997.1.1|Name=mRNA_P-wetherbeei_contig14997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig14997:70..513+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCTGATGAATGGCGCGGTGCTGCTGGGCGCCTATGGTTTTGAAAT
CATTGGCGGACTGGCCCCCTGTCAGCTATGTTATTATCAGCGTATTCCAT
ATGTGATGGCGATCATTCTGTGTGCGGGGGCCCTGCTTAGGCCCGCAATG
GCACAGGTAATATCCGCTGTTTTAATGATCAATTATATGGCTGGCGCCGG
ACTGGGAATCTATCATGCGGGCGTTGAATGGCATTGGTGGGCGGGACCGG
CGACCTGTAGCGCAGGCGCGGGTTCGGGCGGTTCTGTAGAGGCGCTCATG
GCGCAAATACTGGCGGCGCCCGTTGTGCGTTGTGATGAAATTCCATGGTC
TCTGTTCGGAATTTCTCTGGCCGGATATAATGTGCTGATTTCCGCCGGCC
TGTTGGCGCTGTCGGCATATGTTTTC
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