mRNA_P-wetherbeei_contig1497.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1497.1.1
Unique NamemRNA_P-wetherbeei_contig1497.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1497.1.1 vs. uniprot
Match: D7G019_ECTSI (Similar to importin 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G019_ECTSI)

HSP 1 Score: 511 bits (1316), Expect = 6.950e-155
Identity = 436/1326 (32.88%), Postives = 606/1326 (45.70%), Query Frame = 3
Query:   69 MQLPPALSTGNNDHVSTIYRAIEHCTLSPLLEVRQPAEALLSACEEVPGFSDVLVAIAATETATADARIAAVILLKKLVHARWRQRGGRARNVAPEEKQRVRAFLL-VQLSEPDPRVAAQLAVLAAKVARADWPREWPDLFPTLVEGASSSNNALRQARSLLLLQQTLKELTTKRIGLDRMAFVRACADMFAPLRVVWLA-------LLPVLAQAAGPVSTSXXXXXXXXXXXXXXAGIATACDCLLLATKALCLV---MVEGTGLLEHPEAPSFFMSLLEAMSSAISRL-----CALGRVRAVDGAASHDVE-----QVQKILRRLAKTAVKAQKSDPLGFRHYLAVYLHFFYGRLAEAADAXXXXXXXXXXXXXXXXXXXXXXGNDEGLPN------DPYPHDRFTMQCAWFLSNVLSCSAYRKDTLMQAAAKATPAASTAAINTAAAASRGGLSAGRLITARGDVVVTEDVAAAVGTALQESFTPPLVEALVGLCLRRLLLLTPAEVGEWESDPEGFFTLQESLGATESLRVSGQHLFLALLESP--DVG---PSVVAPFLVRAIMSTDALAACNAEATAXXXXXXXXXXXXXXXXXXXXXXXXXXXQALLELDALYQAAGLGASSLQSAGLDIAGWWRSYLAPGLQRLVEGAGVAAHLCAGQGSSPPSPLPRPILLRRFLWVVGCYVDQIDPADHAPLVRAVAHVLAIGSGGGCGGDHDRAVDVVARLAAVAALSSVVELWTADVAVVIAPQLAALTEGMCRLVAALEELETRQQVLTVLAAAYERCAAEAGGGVALASSAGAAALAAVAHLPAIWQGTQHQPPVLVLCVTLFTHVVKCLGLLASGKLDAAAPASATNSSGGGGTKVSGLTPVNSLALALLRAALARSCVASPGRPEETAARSVAFVSPVAPLEEEESFLLTSGLELWLELMQHVQTYDSELHALFGRLPVVAATAAGAAAAVIGGAVGGVEPSEHMKTEMALVEAYTLVGGADFLQAYGDQVCVVFASLAGDVRPKGAAILARTAETALICFPREFSCML----VARGAADSLLAACIDGG-GSQQPDAVKVQYLPVLCRVLLGAPEAFAAVFERRPE--------------GAGSA---------LEGFVATIARLFDAAGAGGGGARRRKLWALALLGLLPLGLMSALQRMDSIVNICVDVLTEADAGNGNXXXXXXXXXXXXXXXXXGATHALPRSLRRLLASDDASDRSGSENDEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLTDLVVMADLRAAVVTAMDHCRAAVGTDLFSEAMSSCEPVLLAQLQAAV 3866
            M+LP ALS  N  H  TIY+AIE  T SP+ EVR+PAE LL ACEE+PG++ VL AIA T  A  DAR  AVILLK +V  RWR RGGR   V   EK  +R  L    + EP+ RV +QLAVL  K+AR DWP +WP LFP LV  +  S +  RQ  SL    + LKEL+ KRIG D+ +F++  AD+   L   W +       LLP++A  AG V                  G   A + + L T  + ++   +  G   L+HP     F  LL  M S ++ L      A   +    G    D E     ++Q++  R+A TAV AQK  P+GFR YL+ YL FF  +L+  A                        G     P       DP     F +QC  F++NV+ CS+YR++ L +A A AT A    A  TA    R G  AGR+IT +GD ++T D+A  + + + + FT   VEAL+GL L   L LTP E+G+WE  PE +F LQ+S+ A ES+RVS Q +++ALLE+   +VG    + VA  L + +   + +  C     +                             +L  DALY  AGLGA +++    D   W++++L P L+ LV      A L A   S    P+   +LLRR +W++GC+ +QI  +    LV+A A+V+                D+V RL+A++AL S++ LW  D    +AP L  L   +  +   + E++ RQ+VLTV++   ER       G  L         AAVA LP +W  T  Q P+   C+ + THVV  LG      LD  A A    S     TKV                                               +E  +L+ +GL LWL L++H   Y   LH LF R+P +  T                   +++K  M ++EA+ ++GG  FLQA+G  VC  F  + G V+PKGAA ++R   + L  FP E S ML    V R  A++ L    DG   S++PD V VQ++ VLCRVLLGAP       +   +              GA  A         L   V  +  LFD+AG    G  RR+LWA+ALL LLP      ++ +D IVNICVDVLTE     G                         + L+  LA     +   +   E +                             AL  D+ V  DL+  V  +MD  RA +G   +  A+ + EPV+L +LQ  V
Sbjct:    1 MELPDALSPDNPGHAQTIYQAIEASTQSPVPEVRKPAEQLLKACEELPGYTSVLAAIATTHAAPTDARATAVILLKNMVRVRWRSRGGRGAVVGDGEKAALREVLAGAGMEEPEERVVSQLAVLMGKIARVDWPGQWPQLFPNLV-ASLLSGSPRRQRMSLCGTNEVLKELSMKRIGFDKASFIKTSADLLPVLCQAWDSQWAIIEGLLPLVA--AGNVPDPGGSD-----------GATAAVEAVPLGTVCIKIIRRLLQFGIPGLDHPSIELLFSGLLHRMQSVVAALEQHQAKARAALSPNVGGGKEDGEAAFLGELQELAERMACTAVDAQKDHPIGFRRYLSAYLSFFCEQLSAMARVRATCPSKGVGGTGAGVGAVAGGGLWREAPETFGGVVDPQSIGPFCIQCMSFVANVVCCSSYREEVLQKAIAAATVAPGGVAPVTAR---RPG--AGRIITGKGDAIITADIAREISSVMTDFFTKERVEALLGLLLEGYLPLTPVELGDWEDQPEDYFLLQDSMEARESVRVSAQQVYMALLEASGNNVGGVLAAAVANMLSQGVQ--EQIETCRQTTISPQ---------------------------VLACDALYLCAGLGAYTVKQH-FDFQAWFQAFLGPALEALVATMQARA-LQAPAVSDSCGPM---VLLRRLMWLLGCWAEQIPASLRPALVQATANVMKATE-----------ADMVIRLSALSALRSLLSLWDLDPEQCLAPALGWLVPALYAMFKDVREMDNRQEVLTVMSEMLERS------GRLLVPH----CQAAVAGLPDVWSATSSQTPLRCSCLQVMTHVVDALGRDKGPDLDRIALAMVDVS-----TKVG---------------------------------------------SDEAIYLMETGLGLWLALLRHATDYSEGLHNLFPRIPEMLDT-----------------DLDNLKQSMLILEAHVVIGGTVFLQAHGPLVCTCFCRVVGQVKPKGAAFVSRALNSVLRKFPVEASRMLDDGGVIRQVAEACLVGVNDGSDSSREPDLVIVQHITVLCRVLLGAPATLRGALQHLADSHPARSGGPNSTNGGASDANPTANPDWLLAELVGQMTALFDSAGYSEAGVWRRRLWAMALLKLLPSANSGVIKNLDQIVNICVDVLTEEREDGG-------------------------KRLKESLAQPPVGEPDSASASEPNLLHSRLLE---------------------ALQADVAVTTDLKGLVRASMDALRATLGDQGWQVAVETVEPVVLRELQRMV 1139          
BLAST of mRNA_P-wetherbeei_contig1497.1.1 vs. uniprot
Match: A0A6H5L766_9PHAE (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L766_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 6.240e-56
Identity = 155/431 (35.96%), Postives = 206/431 (47.80%), Query Frame = 3
Query:   69 MQLPPALSTGNNDHVSTIYRAIEHCTLSPLLEVRQPAEALLSACEEVPGFSDVLVAIAATETATADARIAAVILLKKLVHARWRQRGGRARNVAPEEKQRVRAFLL-VQLSEPDPRVAAQLAVLAAKVARADWPREWPDLFPTLVEGASSSNNALRQARSLLLLQQTLKELTTKRIGLDRMAFVRACADMFAPLRVVWLA-------LLPVLAQAAGPVSTSXXXXXXXXXXXXXXAGIATACDCLLLATKALCLV---MVEGTGLLEHPEAPSFFMSLLEAMSSAISRL-----CALGRVRAVDGAASHDVEQV-----QKILRRLAKTAVKAQKSDPLGFRHYLAVYLHFFYGRLAEAADAXXXXXXXXXXXXXXXXXXXXXXGNDEGLPN------DPYPHDRFTMQCAWFLSNVLSCSAYRKDTLMQ 1280
            M+LP ALS  N  H  TIY+AIE  T SP+ EVR+PAE LL ACEE+PG++ VL AIA T  A  DAR  AVILLK +V  RWR RGGR   V   EK  +R  L    + EP+ RV +QLAVL  K+AR DWP +W       V  +  S    RQ  SL    + LKEL+ KRIG D+ +F++   D+   L   W +       LLP +A    PV                  G   A + + L T  + ++   +  G   L+HP     F  LL  M S ++ L      A   +    G    + E V     Q++  R+A TAV AQK  P+GFR YL+ YL FF  +L+    +                      G     P       DP     F +QC  F++NV+SCS+YR++ L +
Sbjct:    1 MELPDALSPDNPGHTQTIYQAIEASTQSPVPEVRKPAEQLLKACEELPGYTSVLAAIATTHAAPTDARATAVILLKNMVRVRWRSRGGRGAVVGDREKAALREVLAGAGMEEPEERVVSQLAVLMGKIARVDWPGQWXXXXXXXV-ASLVSGIPRRQRMSLCGTNEVLKELSMKRIGFDKASFIKTSVDLLPVLCQAWDSQWAIIEGLLPSVAAGNVPVPGGSD-------------GATAAVEAVSLGTVCIKIIRRLLQFGIPGLDHPSIELLFSGLLHRMQSVVAALEQHQAKARAALNPNLGGGKEEREAVFLGELQELAERMACTAVDAQKDHPIGFRRYLSAYLSFFCEQLSAMVRSRVTCPSKGVGGKGAGVGAVAGGGLWREAPETFGGVVDPQSIGPFCIQCMSFVANVVSCSSYREEVLQK 417          
BLAST of mRNA_P-wetherbeei_contig1497.1.1 vs. uniprot
Match: A0A1V9YZ41_9STRA (Importin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZ41_9STRA)

HSP 1 Score: 176 bits (447), Expect = 4.490e-41
Identity = 189/718 (26.32%), Postives = 294/718 (40.95%), Query Frame = 3
Query:   69 MQLPPALSTGNNDHVSTIYRAIEHCTLSPLLEVRQPAEALLSACEEVPGFSDVLVAIAATETATADARIAAVILLKKLVHARWRQRGGRARNVAPEEKQRVRAFLLVQLSEPDPRVAAQLAVLAAKVARADWPREWPDLFPTLVEGASSSNNALRQARSLLLLQQTLKELTTKRIGLDRMAFVRACADMFAPLRVVWLALLPVLAQAAGPVSTSXXXXXXXXXXXXXXAGIATACDCLLLATKALCLVMVEG-TGLLEHPEAPSFFMSLLEAMSSAISRLCALGRVRAVDGAASHDVEQVQKILRRLAKTAVKAQKSDPLGFRHYLAVYLHFFYGRLAEAADAXXXXXXXXXXXXXXXXXXXXXXGNDEGLPNDPYPHDRFTMQCAWFLSNVLSCSAYRKDTLMQAAAKATPAASTAAINTAAAASRGGLSAGRLITARGDVVVTEDVAAAVGTALQESF-TPPLVEALVGLCLRRLLLLTPAEVGEWESDPEGFFTLQESLGATESLRVSGQHLFLALLESPDVGPSVVAPFLVRAIMSTDALAACNAEATAXXXXXXXXXXXXXXXXXXXXXXXXXXXQALLELDALYQAAGLGASSLQSAGLDIAGWWRSYLAPGLQRLVEGAGVAAHLCAGQGSSPPSPLPR---PILLRRFLWVVGCYVDQIDPADHAPLVRAVAHVLAIGSGGGCGGDHDRAVDVVARLAAVAALSSVVELW 2207
            M +P AL      H+  +   +E   LSP  EVR   EA L  C ++PGF+ + + +     A A  R+ A + LK  V   W  RG R  +++ +EK +VR  LL  + EP+  VA QLAV  A++AR D+P+EWPDLF  L +      + L+QAR+L +L+  +KEL T+R+   R+ F      +   +  +W   +  L  AA                      + +    +LL+TK L  +++ G   L+     P  F +  +   + ++    L       G  SH      ++L  L    V  QK  P+ FR YL  Y H      A+A                                   YP D+  +    +L+NV+ C  Y+         +A                        +ITA G V +T+ + A     L      P L+ +L+ L + R L LT A++ +W+ DPEGF TLQESL A++S+R   + LFL+LL++      ++ P ++R I S  A                                      A+L +DA+   AGL +  L  +  D   W+   L P LQ+                   P+ L     P+L RR +W++GC++ Q+      PL  A+ H+LA  +         +A D   +  AV  L S+V  W
Sbjct:    1 MNVPAALGPA---HLGDVIATMEQA-LSPYPEVRVGGEATLQQCMKLPGFACLCMELLQQPLADAT-RLMAALSLKNAVTNSWVVRGSRQFSISADEKVQVRLRLLQHMEEPNKAVATQLAVTVARIARHDFPKEWPDLFGALRD-IIQQGSPLQQARALRVLKAVVKELATRRLMAHRIVFNDMSVVVCPFIAQLWQRQVQALTTAAAD-------------------DVESVLTSVLLSTKVLHHLVLHGFKALVPLDVVPFVFTNFYQTFQALVAFTHRLTPESPALGL-SH------RVLTALTGLVVAVQKEHPIEFRDYLGAYPH-----TAQAHTCTGPFLQTFYTTLSEPRT---------------YP-DKLVIHLLSYLTNVMGCHLYQHLPSATGVVRA------------------------VITAAGSVDLTDAMVAECQQQLGAFMHDPALLSSLLELIVVRYLRLTAADLEQWQEDPEGFVTLQESLSASDSVRACAEVLFLSLLQTHR---EMLTPCVLRMIESASA--------------------------WLRTPLADADENAVLRVDAVLLGAGLASYDLHES-FDFEPWFLQTLVPYLQQ-------------------PTALTLRGVPVLSRRIVWLIGCWLAQLSAQVRIPLYEALVHLLAADA---------QAADTAVKCGAVQTLESLVNDW 583          
BLAST of mRNA_P-wetherbeei_contig1497.1.1 vs. uniprot
Match: A0A1V9ZQZ8_9STRA (Importin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQZ8_9STRA)

HSP 1 Score: 156 bits (395), Expect = 7.650e-35
Identity = 173/720 (24.03%), Postives = 289/720 (40.14%), Query Frame = 3
Query:   69 MQLPPALSTGNNDHVSTIYRAIEHCTLSPLLEVRQPAEALLSACEEVPGFSDVLVAIAATETATADARIAAVILLKKLVHARWRQRGGRARNVAPEEKQRVRAFLLVQLSEPDPRVAAQLAVLAAKVARADWPREWPDLFPTLVEGASSSNNALRQARSLLLLQQTLKELTTKRIGLDRMAFVRACADMFAPLRVVWLALLPVLAQAAGPVSTSXXXXXXXXXXXXXXAGIATACDCLLLATKALCLVMVEG-TGLLEHPEAPSFFMSLLEAMSSAISRLCALGRVRAVDGAASHDVEQVQKILRRLAKTAVKAQKSDPLGFRHYLAVYLHFFYGRLAEAADAXXXXXXXXXXXXXXXXXXXXXXGNDEGLPNDPYPHDRFTMQCAWFLSNVLSCSAYRKDTLMQAAAKATPAASTAAINTAAAASRGGLSAGRLITARGDVVVTEDVAAA----VGTALQESFTPPLVEALVGLCLRRLLLLTPAEVGEWESDPEGFFTLQESLGATESLRVSGQHLFLALLESPDVGPSVVAPFLVRAIMSTDALAACNAEATAXXXXXXXXXXXXXXXXXXXXXXXXXXXQALLELDALYQAAGLGASSLQSAGLDIAGWWRSYLAPGLQRLVEGAGVAAHLCAGQGSSPPSPLPR--PILLRRFLWVVGCYVDQIDPADHAPLVRAVAHVLAIGSGGGCGGDHDRAVDVVARLAAVAALSSVVELW 2207
            M +P  L  G   HV  +   +E   LS   EVR   EA L  C ++PGF+ + + I   E      R+ A + LK  V + W  RG R   ++ EEKQ+VR  LL ++ E +  VA Q+AV  A++AR+D+P+EWPDLF  L        + L Q+ +L +L+  +KEL ++R+   R  F    A +   +  +W   +  L                        A I +    L+L+TK L  ++  G   L+     P  F +  +     +         + +    S  ++   ++L  L    V  QK  P+ FR +L  +L  FY  L E  +                                    D+  +    +L+NV+ C  Y+    M  A ++                        +ITA G V +T+++       +G  + ++    L+  L+ L + R + LT  ++ +W+ DPE F TLQESL + +S+R   + LFL+LL++       + P +++ I    A  +    A+                            + +L +DA+  AAGL +  L  +  D   W+   L P LQ+                  P +   R  P+L RR +W++GC++ Q+      PL  A+ H+L             +  D+  +  A+  L S+V  W
Sbjct:    1 MNVPAVLGRG---HVRDVIMTMEQA-LSMHPEVRSSGEATLQQCMKLPGFACLCLEILG-EGVNDATRLMAALSLKNTVTSSWITRGSRQFTISNEEKQQVRVGLLQRIEESNKAVATQIAVTIARIARSDFPKEWPDLFGVL-RNHIQQGSPLNQSCALRVLKSVVKELASRRLLAHRTIFNEMSAAVCPFVSHLWQNQVNALKATTDQ------------------AEIESLLSSLVLSTKVLHHLVSHGFKALICLDVIPFIFANFFQTFQGLLQF------TKELLPPDSASIQLSYRVLIALTGLVVAVQKEHPIEFREFLGPFLQLFYTMLTEQHNCP----------------------------------DKLLINMISYLTNVMGCILYQNLPSMTGAQRS------------------------VITAAGSVDLTDEMVKECQQQLGGFMHDA---SLLSNLLELIVVRYMRLTAHDIEQWQEDPEAFITLQESLSSEDSVRACAEILFLSLLQTHR---DTLTPCVLQMIQVASARLSSVQMAS---------------------------DEDILHIDAVLLAAGLASYDLHES-FDFEPWFLQTLVPYLQQ------------------PTTMTIRSVPVLSRRIVWLIGCWLAQLSAQVRIPLYEALLHLLR---------SDGQTADITVKFCAIQTLESLVNDW 571          
BLAST of mRNA_P-wetherbeei_contig1497.1.1 vs. uniprot
Match: W2PJR8_PHYPN (Importin N-terminal domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2PJR8_PHYPN)

HSP 1 Score: 146 bits (368), Expect = 1.510e-31
Identity = 182/739 (24.63%), Postives = 288/739 (38.97%), Query Frame = 3
Query:  183 ALLSACEEVPGFSDVLVAIAATETATADARIAAVILLKKLVHARWRQRGGRARNV-APEEKQRVRAFLL-VQLSEPDPRVAAQLAVLAAKVARADWPREWP--DLFPTLVEGASSSNNAL---RQARSLLLLQQTLKELTTKRIGLDRMAFVRACADMFAPLRVVWLALLPVL---AQAAGPVSTSXXXXXXXXXXXXXXAGIATACDCLLLATKALCLVMVEGTGLLEHPEAPSFFMSLLEAMSSAISRLCALGRVRAVDGAASHDVEQVQ---KILRRLAKTAVKAQKSDPLGFRHYLAVYLHFFYGRLAEAADAXXXXXXXXXXXXXXXXXXXXXXGNDEGLPNDPYPHDRFTMQCAWFLSNVLSCSAYRKDTLMQAAAKATPAASTAAINTAAAASRGGLSAGRLITARGDVVVTEDVAAAVGTALQESFTPP--LVEALVGLCLRRLLLLTPAEVGEWESDPEGFFTLQESLGATESLRVSGQHLFLALLESPDVGPSVVAPFLVRAIMSTDALAACNAEATAXXXXXXXXXXXXXXXXXXXXXXXXXXXQALLELDALYQAAGLGASSLQSAGLDIAGWWRSYLAPGLQRLVEGAGVAAHLCAGQGSSPPSPLPRPILLRRFLWVVGCYVDQIDPADHAPLVRAVAHVLAIGSGGGCGGDHDRAVDVVARLAAVAALSSVVELWTADVAVVIAPQLAALTEGMCRLVAALEELETRQQVLTVLAAAYERCAAE 2354
            ALL  C  VP        +A   +  AD R+ AV+ LK  + A+WR R  +A N+ + EE+  VR  LL   L EP   VA  LA++ A +ARA++P +W    LFP +++     N  +   R+ R + +  + +KEL  +R+   R  F     ++   L   W A    L    Q+ G  +                   A   + L+  TK +  +++     L   +      S L    + + +L    +    D  A+   E +Q   K + R+A   V  Q S P+ FR YL  YL  F+  L   A                         N   LP+      R  +    F +NVLSC  Y+ ++L        P  +T  I              ++ITA GDV +T+ +     TA+Q  FT       +++ L +   + LT  ++ EW+SDPE + TL ESL A ES+R   +++FL L+++    P    P L +   S  +                                     + +LE+DA+  A GLG   L     +   W+ + L P L       G    L              P+L  R +W+V C++ Q+      PL  ++ +  A          H    DV  +L  +  L S+V  W  +     AP L    E +       +E E++ +VL  L A  + C A+
Sbjct:   45 ALLDMCVAVPNAEGTPRNLAQLASEDADVRLLAVLWLKHFLKAQWRAR--KATNLLSDEERAHVRGVLLFASLHEPQQTVALHLALIVATIARAEFPTQWSFDTLFPMMIQPLRRLNGVVDLSRERRGVDVCYRVVKELAARRLMQHRKQFAILSVELLPLLLQYWTATATQLNSFLQSQGVAADQTNNEKTATIATALMTTGAEQLNVLVTTTKIISTMLLNAFRDLSALQNGEPMRSALVEFYNQLEKLVKFRQAFVGDAGAADVEEAIQTLDKCMHRIAAIVVGVQNSYPMEFREYLPPYLTLFWNVLTAFASV-----------------------NMTVLPSPR----RLQIDALQFFANVLSCRLYKNESLSG------PDGTTRVIT-------------KVITATGDVALTDAMVLEAQTAVQTFFTQTENRFASMLNLVVMHYMTLTAKDLDEWQSDPEAYCTLMESLTAKESVRACAENVFLTLVQN---FPDQTIPALTQITSSASSY----------------------LVELGRGLISAGDDRHILEMDAVLLAIGLGCYDLHDC-FEFEPWFLTNLVPILVNQDPAVGSFHGL--------------PVLRFRIVWLVSCWLAQLSANVRPPLYDSLLNPSA--------SFHQADADVALKLRVIQTLESMVNDWGFEHDA-FAPFLPRALECLFAFFPQADESESKMKVLGCLEAIIQACGAQ 686          
BLAST of mRNA_P-wetherbeei_contig1497.1.1 vs. uniprot
Match: G4YJL6_PHYSP (Importin N-terminal domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YJL6_PHYSP)

HSP 1 Score: 140 bits (353), Expect = 9.050e-30
Identity = 180/745 (24.16%), Postives = 294/745 (39.46%), Query Frame = 3
Query:  183 ALLSACEEVPGFSDVLVAIAATETATADARIAAVILLKKLVHARWRQRGGRARNV-APEEKQRVRAFLL-VQLSEPDPRVAAQLAVLAAKVARADWPREWP--DLFPTLVEGA---SSSNNALRQARSLLLLQQTLKELTTKRIGLDRMAFVRACADMFAPLRVVWLAL-------LPVLAQAAGPVSTSXXXXXXXXXXXXXXAGIATA----CDCLLLATKALCLVMVEGTGLLEHPEAPSFFMSLLEAMSSAISRLCALGRVRAVDGAASHDVEQVQKILRRLAKTAVKAQKSDPLGFRHYLAVYLHFFYGRL-AEAADAXXXXXXXXXXXXXXXXXXXXXXGNDEGLPNDPYPHDRFTMQCAWFLSNVLSCSAYRKDTLMQAAAKATPAASTAAINTAAAASRGGLSAGRLITARGDVVVTEDVAAAVGTALQESFTPP--LVEALVGLCLRRLLLLTPAEVGEWESDPEGFFTLQESLGATESLRVSGQHLFLALLESPDVGPSVVAPFLVRAIMSTDALAACNAEATAXXXXXXXXXXXXXXXXXXXXXXXXXXXQALLELDALYQAAGLGASSLQSAGLDIAGWWRSYLAPGLQRLVEGAGVAAHLCAGQGSSPPSPLPRPILLRRFLWVVGCYVDQIDPADHAPLVRAVAHVLAIGSGGGCGGDHDRAVDVVARLAAVAALSSVVELWTADVAVVIAPQLAALTEGMCRLVAALEELETRQQVLTVLAAAYERCAAE 2354
            ALL  C  VPG   V   +A      AD R+  V+ LK  + A+WRQR  +A N+ + +E+ + R+ LL   L EP P VA  LA++ A +ARA++P  W    LFP +++      ++ +   + R + +  + +KEL  +R+   R  F     ++   L+  W  +       L     AAG  S                A +AT      + L+  TK +  +++     L   +      S L    + + RL                +  + K + R+A   V  Q S P+ FR YL  YL  F+    A A+D                            LP+      R  +    F +NVLSC  Y+K++L        P  +T  ++             ++ITA GDV +T+ +      A+Q  FT       +++ + +   + LTP ++ EW+SDPE + TL ESL A ES+R   +++FL L+++    P    P L +   S  A                                     + +L++DA+  A GLG   L     +   W+ + L P          +  +  A  GS    P    +L  R +W+V C++ Q+      PL  A+ +  A          H    DV  +L  +  L S++  W  +     AP L    E +       +E E++ +VL  L A  + C A+
Sbjct:   45 ALLDMCVAVPGADGVPRNLAQLAAEDADVRLLGVLWLKHFLKAQWRQR--KAMNLLSDDERAQARSVLLFAALHEPQPTVALHLALVVATIARAEFPALWAFEALFPPMLQPLRRQDATPDVASERRGVDVCYRVVKELAVRRLMQHRKQFAMLSVELLPLLQQYWKTVATQLNDFLQTQVDAAGQSSADKAAAIA--------AALATTGAEQLNVLVTTTKLISTMLLNAFRDLSALQNGELMRSALVEFYNQLERL--------------ETMLTLDKCMHRVAAIVVGVQNSYPMEFREYLPPYLTLFWNVFNAFASDP------------------------STALPSPT----RLQIDSLQFFANVLSCRLYKKESLSG------PDGTTRVVS-------------KVITATGDVALTDAMMLEAQAAVQTFFTQAENRFASMLNMVVMHYMTLTPNDLNEWQSDPEAYCTLMESLTAKESVRACAENVFLTLVQN---FPDQTIPALTQMTSSASAY---------------------LVELGHGQVSTAGDDRRVLDMDAVLLAIGLGCYDLHDC-FEFEPWFLTNLVP----------ILVNPSAAVGSYQGLP----VLRFRIVWLVSCWLAQLSANVRPPLYDALLNPSAF--------FHQADADVALKLRIIQTLESMMNDWGFEYEA-FAPLLPRALECLFAFFPQADESESKMKVLGCLEAIIQACGAQ 670          
BLAST of mRNA_P-wetherbeei_contig1497.1.1 vs. uniprot
Match: A0A835Z4B7_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B7_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.140e-29
Identity = 80/155 (51.61%), Postives = 100/155 (64.52%), Query Frame = 3
Query:  144 TLSPLLEVRQPAEALLSACEEVPGFSDVLVAIAATETATADARIAAVILLKKLVHARWRQ-RGGRARNVAPEEKQRVRAFLL--VQLSEPDPRVAAQLAVLAAKVARADWPREWPDLFPTLVEGASSS---NNALRQARSLLLLQQTLKELTTKR 590
            T +P  E+R+ AEA L ACE   GFSD L+AI +++  +A  R+ AVILLK LV   W+  RG  AR ++ EEKQRVR FLL  V   E D  VA QLAVL++KVAR DWPREWPDLFP L+    +    +  L Q R+L ++   LKEL TKR
Sbjct:    3 TQAPTNEIRKEAEASLRACEASAGFSDALLAIVSSDAPSA-VRLVAVILLKGLVRGSWKATRGAAARVLSSEEKQRVREFLLGPVPRQEGDNGVAVQLAVLSSKVARHDWPREWPDLFPALLNIVLTPRPPDGGLEQRRALFVIHHVLKELETKR 156          
BLAST of mRNA_P-wetherbeei_contig1497.1.1 vs. uniprot
Match: A0A835Z4X2_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 6.230e-29
Identity = 147/474 (31.01%), Postives = 203/474 (42.83%), Query Frame = 3
Query: 2061 ADH--APLVRAVAHVLAIGSGGGCGGDHDRAVDVVARLAAVAALSSVVELWTADVAVVIAPQLAALTEGMCRLVAALEELETRQQVLTVLAAAYERCAAEAGGGVALASSAGAAALAAVAHLPAIWQGTQHQPPVLVLCVTLFTHVVKCLGLLASGKLDAAAPASATNSSGGGGTKVSGLTPVNSLALALLRAALARSCVASPGRPEETAARSVAFVSPVAPLEEEESFLLTSGLELWLELMQHVQTYDSELHALFGRLPVVAATAAGAAAAVIGGAVGGVEPSEHMKTEMALVEAYTLVGGADFLQAYGDQVCVVFASLAGDVRPKGAAILARTAETALICFPREFSCML--VARGAADSLLAACIDGGGSQQPDAVKVQYLPVLCRVLLGAPEAFAAVFERRPEGAGSALEGFVATIARLFDAAGAGGGGARRRKLWALALLGLLPLGLMSALQR-MDSIVNICVDVLTEAD 3467
            A+H  AP+   VA ++A   GGG         D   +LAA++ L  +VE W  D +  + P L  L +G+  ++  + ELE RQQVL  L A  E         V+ A    A  L  V  +P +W   + Q P+ + C+TL   +V     LA G    AA A               L PV    +AL     AR                             +++++T G+ELWL+  +    Y +ELHALF  L  V                      E +KT M L+EAY L+G    L AY + V     + A  V+P GA  + R  E  L   PRE + +L  V      S+LA+   G  S +PD V VQ++ VL  VLL AP+  A +  R   G    +      +  LFDA G  GG   RR+ W LALL  LP      +Q  MD +VNICV  L + +
Sbjct:  370 ANHLTAPIAADVASLVAAVLGGGAAQG-----DAAVQLAALSTLHGIVEQWVYDPSEALVPALGPLLDGLFSVLGRMRELEPRQQVLDALVAVIEI--------VSTALLPFANKLLEV--MPLVWSAAEEQTPLRITCLTLMAQIV-----LAVGTTPGAAQA---------------LAPVVVPMIALACHVDARDA---------------------------DAYMITGGMELWLQYTRRCPAYTAELHALFLLLAGVLE-----------------RDMECVKTGMLLLEAYALLGQQAMLSAYAEHVVRSLQTCAAQVKPDGAQFVTRALEAILNVAPREGAALLLPVLERLLVSVLASA-RGESSCEPDIVIVQHVTVLAHVLLAAPDVCAELLRRCSVG----VVDLAHVMVHLFDAVG--GGTPHRRRSWCLALLACLPQLRPEQVQELMDQVVNICVSALNDEE 757          
BLAST of mRNA_P-wetherbeei_contig1497.1.1 vs. uniprot
Match: A0A662XT61_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XT61_9STRA)

HSP 1 Score: 135 bits (340), Expect = 3.260e-28
Identity = 178/746 (23.86%), Postives = 294/746 (39.41%), Query Frame = 3
Query:  186 LLSACEEVPGFSDVLVAIAATETATADARIAAVILLKKLVHARWRQRGGRARNVAPEEKQRVRAFLL-VQLSEPDPRVAAQLAVLAAKVARADWPREWP--DLFPTLVEGASSSNNAL---RQARSLLLLQQTLKELTTKRIGLDRMAFVRACADMFAPLRVVWLALLPVLAQAAGPVSTSXXXXXXXXXXXXXXAGIATACD---CLLLATKALCLVMVEGTGLLEHPEAPSFFMSLLEAMSSAISRLCALGR--VRAVDGAA----SHDVEQ----VQKILRRLAKTAVKAQKSDPLGFRHYLAVYLHFFYGRLAEAADAXXXXXXXXXXXXXXXXXXXXXXGNDEGLPNDPYPHDRFTMQCAWFLSNVLSCSAYRKDTLMQAAAKATPAASTAAINTAAAASRGGLSAGRLITARGDVVVTEDVAAAVGTALQESFTPP-----LVEALVGLCLRRLLLLTPAEVGEWESDPEGFFTLQESLGATESLRVSGQHLFLALLESPDVGPSVVAPFLVRAIMSTDALAACNAEATAXXXXXXXXXXXXXXXXXXXXXXXXXXXQALLELDALYQAAGLGASSLQSAGLDIAGWWRSYLAPGLQRLVEGAGVAAHLCAGQGSSPPSPLPRPILLRRFLWVVGCYVDQIDPADHAPLVRAVAHVLAIGSGGGCGGDHDRAVDVVARLAAVAALSSVVELWTADVAVVIAPQLAALTEGMCRLVAALEELETRQQVLTVLAAAYERCAA 2351
            LL     VPG       + A      D R+ A + LK  + A+WRQR   A  ++ +E+  VR  LL   L EP P +A  LA++ A++ARA++P +W    LFP +++        +   ++ RS+ +  + +KEL  +R+   R  F     ++   L   W A    L         +              A  ++  D    L+  TK +  +++     L   +      S L    + + RL    +  V  VD +     + ++EQ    + K L R+A   V  Q S P+ FR YL+ YL  F+  L   A +                               P P  R  +    + +NVLSC  Y+ ++L        P  +T  ++             ++ITA GDV +T+ +      A++  F PP        +L+ L + + ++LT  ++ +W+SDPE + TL ESL A ES+R   +++FL L+++    PS   P L +    T   +A   E                                +L++DA+  A GLG   L     +   W+ + L P L       G   +L              P+L  R +W+V C++ Q+      PL  A+ +  A          H    DV  +L  +  L ++V  W  D     AP L    E +       +E E++ +VL+ L A  + C A
Sbjct:   46 LLEMAVAVPGADGTPRNLQALAALDPDVRLLACLWLKHYLKAQWRQRQP-ANLLSDDERAHVRNVLLFAALREPQPTIALHLALILAQIARAEFPTQWSFETLFPPMLQPLRRQEGVVDLRQERRSVDVCYRVVKELAARRLMQHRKQFAMLSVELLPLLLRYWTAAGTQLNDFLWTQYEASGQSTDAKTLTITSALTSSGVDQLGLLVTTTKLISTMLLNAFRDLSALQNGELMRSALVEFYNQLERLVKFRQAFVALVDSSGDVSKTAELEQALLTLDKCLHRIAAIVVGVQNSYPMEFREYLSPYLTLFWNILNSCASSSSSVL--------------------------PAPR-RLQIDALQYFANVLSCRLYKSESLSG------PDGTTRVLS-------------KVITATGDVTLTDAMVLEAQAAVEAFFAPPGGSESRFASLLNLVVMQYMVLTTKDLEDWQSDPETYCTLVESLTAKESVRACAENVFLTLVQN---FPSQTIPALTQ---MTSVASAYLVEV---------------------GRGNPPAVDRVLDMDAVLLALGLGCYDLHDC-FEFEPWFLANLVPILVNPDASVGSCHNL--------------PVLRYRIVWLVSCWLAQLSATVRPPLYDALLNPPAF--------FHQAEADVALKLRIIQTLEAMVSDWGFDHEA-FAPFLPRALECLFAFFPQADESESKMKVLSCLEAIIQACGA 693          
BLAST of mRNA_P-wetherbeei_contig1497.1.1 vs. uniprot
Match: A0A2K1JFV7_PHYPA (Importin N-terminal domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JFV7_PHYPA)

HSP 1 Score: 134 bits (337), Expect = 6.710e-28
Identity = 140/518 (27.03%), Postives = 215/518 (41.51%), Query Frame = 3
Query:  105 DHVSTIYRAIEHCTLSPLLEVRQPAEALLSACEEVPGFSDVLVAIAATETA--TADARIAAVILLKKLVHARWRQRGGRARNVAPEEKQRVRAFLLVQLSEPDPRVAAQLAVLAAKVARADWPREWPDLFPTLVEGASSSNNALRQARSLLLLQQTLKELTTKRIGLDRMAFVRACADMFAPLRVVWLALLPVLAQAAGPVSTSXXXXXXXXXXXXXXAGIATACDCLLLATKALCLVMVEG-----TGLLEHPEAPSFFMSLLEAMSSAISRLCALGRVRAVDGAASHDVEQVQKILRRLAKTAVKAQKSDPLGF--RHYLAVYLHFFYGRLAEAADAXXXXXXXXXXXXXXXXXXXXXXGNDEGLPNDPYPHDRFTMQCAWFLSNVLSCSAYRKDTLMQAAAKATPAASTAAINTAAAASRGGLSAGRLITARGDVV-VTEDVAAAVGTALQESFTPPLVEALVGLCLRRLLLLTPAEVGEWESDPEGFFTLQESLGATESLRVSGQHLFLALLES 1628
            D +S +Y  +    LS    VR+PAEA L+ACE  PGF   L+ I   +     +DAR  A +  K  +   WR R   +  ++  EK  +R  LL  + E + +VA QLA+L +K+AR D+PR+WP+LFPTL++   S +  L   R  L+L QTLKEL+TKR+  D+  F    A  F      W      + Q    + T                 +   C+  +L  K L  ++V G       + E         + L+A+   +     L   + +          V K   RL K  ++ Q + P  F  R  L   L F Y  + E                            +E LP      + F ++C  FL NV+ C AYR +   +   ++TP                      L  A+G++    E++       L        +  L  + +RR  +LTPA++ EW +DPE F   Q++    + LR S + L+L+L ES
Sbjct:    7 DDLSRVYTLLRDA-LSQDESVRKPAEATLAACENRPGFCSCLLEIIGAKDLGQQSDARWLASVYFKNSISRYWRTRRD-SPGISDAEKPHLRNRLLNLIREENNQVAVQLALLISKIARVDYPRDWPELFPTLLQKLQSPD-VLTTQRVYLVLNQTLKELSTKRLAADQRNFAEVTAQYFEYTWHHWCTDTQGILQG---LRTLLAGPQTAILASDQDQALRLTCERWMLCLKVLRRMLVHGFQSDVKSVQEVGPVKDVCPAFLQALQEFLQYRIGLKHGQVLQAF-------VDKACLRLMKIFIEVQSTHPYSFSNRAVLPPVLEFCYIHITEP--------------------------KEENLP-----FEVFLIKCMIFLQNVIECVAYRPNKSGRVVGQSTP---------------------TLEEAKGNLARQAEEI-------LVSLLDKQRLVVLCEIIIRRYFVLTPADLEEWSNDPELFHHEQDAGQYKDKLRPSAESLYLSLFES 452          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1497.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G019_ECTSI6.950e-15532.88Similar to importin 11 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L766_9PHAE6.240e-5635.96Importin N-terminal domain-containing protein n=1 ... [more]
A0A1V9YZ41_9STRA4.490e-4126.32Importin-like protein n=1 Tax=Achlya hypogyna TaxI... [more]
A0A1V9ZQZ8_9STRA7.650e-3524.03Importin n=1 Tax=Thraustotheca clavata TaxID=74557... [more]
W2PJR8_PHYPN1.510e-3124.63Importin N-terminal domain-containing protein n=12... [more]
G4YJL6_PHYSP9.050e-3024.16Importin N-terminal domain-containing protein n=1 ... [more]
A0A835Z4B7_9STRA2.140e-2951.61Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
A0A835Z4X2_9STRA6.230e-2931.01Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
A0A662XT61_9STRA3.260e-2823.86Importin N-terminal domain-containing protein n=1 ... [more]
A0A2K1JFV7_PHYPA6.710e-2827.03Importin N-terminal domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1497contigP-wetherbeei_contig1497:887..6300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G019
PFAMsIBN_N,Xpo1
Model size4634
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.14e-157
EggNOG OGsCOG5657@1|root,KOG1993@2759|Eukaryota
DescriptionRan GTPase binding
Cds size3846
COG categoryD
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1497.1.1prot_P-wetherbeei_contig1497.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1497 955..5486 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186038.9236884-UTR-P-wetherbeei_contig1497:886..9541683186038.9236884-UTR-P-wetherbeei_contig1497:886..954Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1497 887..954 +
1683186038.9805737-UTR-P-wetherbeei_contig1497:5486..60051683186038.9805737-UTR-P-wetherbeei_contig1497:5486..6005Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1497 5487..6005 +
1683186038.9897957-UTR-P-wetherbeei_contig1497:6099..63001683186038.9897957-UTR-P-wetherbeei_contig1497:6099..6300Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1497 6100..6300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186038.9345107-CDS-P-wetherbeei_contig1497:954..10191683186038.9345107-CDS-P-wetherbeei_contig1497:954..1019Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1497 955..1019 +
1683186038.943385-CDS-P-wetherbeei_contig1497:1119..25451683186038.943385-CDS-P-wetherbeei_contig1497:1119..2545Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1497 1120..2545 +
1683186038.9519172-CDS-P-wetherbeei_contig1497:2731..34811683186038.9519172-CDS-P-wetherbeei_contig1497:2731..3481Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1497 2732..3481 +
1683186038.961211-CDS-P-wetherbeei_contig1497:3695..43761683186038.961211-CDS-P-wetherbeei_contig1497:3695..4376Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1497 3696..4376 +
1683186038.9708865-CDS-P-wetherbeei_contig1497:4562..54861683186038.9708865-CDS-P-wetherbeei_contig1497:4562..5486Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1497 4563..5486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1497.1.1

>prot_P-wetherbeei_contig1497.1.1 ID=prot_P-wetherbeei_contig1497.1.1|Name=mRNA_P-wetherbeei_contig1497.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1282bp
MQLPPALSTGNNDHVSTIYRAIEHCTLSPLLEVRQPAEALLSACEEVPGF
SDVLVAIAATETATADARIAAVILLKKLVHARWRQRGGRARNVAPEEKQR
VRAFLLVQLSEPDPRVAAQLAVLAAKVARADWPREWPDLFPTLVEGASSS
NNALRQARSLLLLQQTLKELTTKRIGLDRMAFVRACADMFAPLRVVWLAL
LPVLAQAAGPVSTSTTTAAAGARGSGTSAGIATACDCLLLATKALCLVMV
EGTGLLEHPEAPSFFMSLLEAMSSAISRLCALGRVRAVDGAASHDVEQVQ
KILRRLAKTAVKAQKSDPLGFRHYLAVYLHFFYGRLAEAADAAPSAAISA
GGLGGGCEGGRGGNGNDEGLPNDPYPHDRFTMQCAWFLSNVLSCSAYRKD
TLMQAAAKATPAASTAAINTAAAASRGGLSAGRLITARGDVVVTEDVAAA
VGTALQESFTPPLVEALVGLCLRRLLLLTPAEVGEWESDPEGFFTLQESL
GATESLRVSGQHLFLALLESPDVGPSVVAPFLVRAIMSTDALAACNAEAT
AAEAAAAGAFAAGGVGGGPPNSPPPLPPQALLELDALYQAAGLGASSLQS
AGLDIAGWWRSYLAPGLQRLVEGAGVAAHLCAGQGSSPPSPLPRPILLRR
FLWVVGCYVDQIDPADHAPLVRAVAHVLAIGSGGGCGGDHDRAVDVVARL
AAVAALSSVVELWTADVAVVIAPQLAALTEGMCRLVAALEELETRQQVLT
VLAAAYERCAAEAGGGVALASSAGAAALAAVAHLPAIWQGTQHQPPVLVL
CVTLFTHVVKCLGLLASGKLDAAAPASATNSSGGGGTKVSGLTPVNSLAL
ALLRAALARSCVASPGRPEETAARSVAFVSPVAPLEEEESFLLTSGLELW
LELMQHVQTYDSELHALFGRLPVVAATAAGAAAAVIGGAVGGVEPSEHMK
TEMALVEAYTLVGGADFLQAYGDQVCVVFASLAGDVRPKGAAILARTAET
ALICFPREFSCMLVARGAADSLLAACIDGGGSQQPDAVKVQYLPVLCRVL
LGAPEAFAAVFERRPEGAGSALEGFVATIARLFDAAGAGGGGARRRKLWA
LALLGLLPLGLMSALQRMDSIVNICVDVLTEADAGNGNGAEGGGGGGGGG
GDDGDGATHALPRSLRRLLASDDASDRSGSENDEAHSGGGGGGGRNGELS
RRPRRASLLARRRRRALLTDLVVMADLRAAVVTAMDHCRAAVGTDLFSEA
MSSCEPVLLAQLQAAVGGTASANTITSGQGL*
back to top

mRNA from alignment at P-wetherbeei_contig1497:887..6300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1497.1.1 ID=mRNA_P-wetherbeei_contig1497.1.1|Name=mRNA_P-wetherbeei_contig1497.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=5414bp|location=Sequence derived from alignment at P-wetherbeei_contig1497:887..6300+ (Phaeothamnion wetherbeei SAG_119_79)
TATATTTTTGGGGGGGGAGGAGGGTCTTCTCCCATTCTCCTTTTCAAACC AAATCGGTAATTCGGGTCATGCAGCTACCGCCCGCGCTTTCCACAGGAAA CAATGATCACGTTTCGACGATCTATCGCGCAATGTGAGTTTCTCTTTCTA CTTTGGGCCTGCCTTTTCCTCGCGTGCTTGGAAGCTGACTCTGACTTTTC TGCTTCATGTTTGCCATTTTCGCTTTGCCGCAGCGAGCACTGCACGCTCA GCCCGCTGCTTGAGGTCAGACAGCCAGCGGAGGCCCTTCTCTCAGCATGC GAAGAAGTACCTGGATTTTCAGACGTGCTGGTGGCCATCGCGGCGACTGA GACAGCGACTGCCGACGCGCGAATAGCTGCCGTGATTCTTCTCAAGAAGC TGGTGCACGCGCGTTGGCGCCAGCGGGGAGGCCGTGCGCGCAATGTCGCG CCAGAGGAGAAGCAGCGCGTGCGGGCCTTCCTGCTTGTACAGCTCTCCGA GCCGGACCCCAGAGTCGCGGCGCAGCTGGCTGTTCTGGCGGCGAAAGTTG CCCGAGCCGACTGGCCGAGGGAATGGCCCGATCTCTTCCCGACACTGGTG GAGGGGGCCAGTAGCTCCAACAATGCATTGCGCCAGGCGCGGTCGCTTTT GCTGCTGCAGCAGACGCTCAAGGAGCTGACGACAAAGCGTATCGGGCTCG ACCGGATGGCCTTCGTCCGGGCCTGCGCGGATATGTTTGCGCCGCTTCGC GTCGTGTGGTTAGCACTCCTCCCTGTCCTGGCGCAAGCGGCAGGCCCGGT CTCAACGTCCACAACAACGGCAGCAGCAGGAGCAAGAGGGTCAGGAACAT CGGCAGGGATCGCTACCGCCTGCGACTGCCTGCTGCTGGCCACCAAAGCG CTGTGCCTGGTGATGGTTGAGGGGACCGGGCTCTTGGAACATCCAGAGGC GCCGTCGTTCTTCATGTCGCTGCTGGAAGCAATGTCAAGCGCTATTTCAC GTCTTTGCGCGCTCGGCCGTGTCAGAGCGGTGGACGGTGCCGCATCCCAC GACGTCGAGCAGGTGCAGAAGATACTGCGTCGCCTCGCGAAGACGGCGGT GAAGGCACAAAAGTCGGACCCACTCGGCTTTCGACACTATTTGGCGGTCT ACCTGCACTTTTTCTACGGCCGCCTTGCCGAGGCGGCTGACGCGGCCCCT TCTGCCGCTATCAGCGCCGGTGGACTCGGCGGAGGATGCGAAGGCGGCCG CGGGGGCAACGGAAATGACGAAGGGCTGCCGAACGACCCGTACCCGCACG ACAGATTCACGATGCAGTGTGCATGGTTCCTGTCCAACGTCCTGTCCTGC AGCGCGTACCGCAAGGACACGCTCATGCAGGCCGCCGCCAAAGCGACCCC TGCGGCGTCGACGGCGGCGATCAACACCGCCGCCGCGGCCAGCCGGGGCG GCCTCAGCGCCGGCCGGCTCATCACGGCACGCGGGGACGTGGTGGTGACT GAAGATGTGGCCGCCGCCGTCGGAACGGCGCTGCAAGAGTCCTTCACGCC CCCGCTCGTCGAGGCACTGGTCGGGCTCTGCCTGCGGCGGCTCCTTCTGC TGACACCTGCGGAGGTAGGAGAGTGGGAGTCCGATCCTGAAGGCTTCTTC ACGCTCCAGGTGAGAACGGAAGGAAGGACCTGGGAACATTTGGAAAGCTA TCAGGGATTGTATTCCGCCTTGTGCGGCGTCTTACATCCTCCTTGCTTTC GGCCGCCGATCTCATCAATGCAATATGAACTGATTGAACCGTATGCATTT TTTGATCACTCAACGCTTGCACATTTCTCCTGATGGACCCTTCAGGAAAG CCTTGGCGCCACCGAATCGCTGCGAGTAAGCGGACAGCACCTCTTCCTGG CGCTTCTGGAGAGCCCCGACGTCGGCCCTTCGGTAGTGGCACCTTTCCTC GTGCGCGCTATTATGTCAACTGACGCGCTGGCCGCCTGCAACGCAGAGGC GACAGCGGCGGAGGCGGCGGCTGCCGGAGCGTTCGCCGCGGGCGGCGTGG GCGGCGGGCCGCCAAATTCCCCGCCGCCGCTGCCGCCGCAAGCACTGCTG GAATTGGACGCGCTGTACCAGGCTGCGGGCCTTGGGGCATCATCGCTGCA GTCGGCGGGCCTCGATATCGCCGGCTGGTGGCGGAGCTACCTTGCGCCGG GCCTCCAGCGGCTGGTGGAGGGGGCCGGCGTCGCCGCGCACCTTTGCGCA GGGCAAGGCTCCTCGCCGCCCTCGCCGCTGCCCCGGCCCATTCTGCTGCG CCGATTTTTGTGGGTGGTGGGATGCTACGTCGATCAAATTGACCCGGCCG ATCATGCACCTCTTGTCCGGGCCGTTGCCCACGTCCTGGCAATCGGCAGT GGTGGTGGTTGCGGCGGCGACCACGACCGTGCGGTGGATGTGGTGGCGCG GCTGGCGGCGGTGGCGGCGCTGTCGAGCGTGGTGGAACTGTGGACGGCGG ACGTAGCGGTGGTCATCGCCCCGCAGCTGGCGGCTTTGACGGAGGGCATG TGCCGCCTCGTGGCTGCATTGGAGGAGCTCGAGACCCGCCAGCAGGTACG CTTTGCATTGTCTGCGACAGCACCATGTTACTTTTTCTATTGCCGCTTCT TTCGGTCTTTTATATGATTTGGCTTTTGCCGTCGTGGTGCCTGCTGTTCT GCTTTGTTTGCGGCGTCTTCCTTTGCAAAGTGCTATTGCTGATCAGGCCT TCCTTGCTGACATAGCCGTTTAATGAAATGATAATCCATCCATATCCGGA AAGTGGCAGGTGCTGACGGTCTTGGCGGCAGCTTACGAGAGATGCGCCGC CGAAGCGGGCGGCGGTGTCGCCCTCGCCTCCAGCGCAGGGGCCGCCGCCC TCGCCGCGGTGGCGCACCTGCCGGCCATTTGGCAGGGCACACAGCACCAG CCGCCTGTTCTGGTGCTCTGCGTAACGCTTTTTACTCACGTCGTCAAATG CCTGGGGCTTCTGGCAAGCGGCAAACTGGATGCCGCTGCCCCTGCCTCGG CTACCAACAGCAGTGGGGGCGGCGGCACCAAGGTGTCCGGGCTGACGCCG GTAAACTCGCTCGCGTTGGCGCTGCTTCGAGCCGCGCTCGCCCGATCATG CGTGGCGTCGCCGGGCCGTCCCGAGGAGACCGCGGCCAGATCAGTGGCGT TCGTTTCACCGGTGGCGCCGCTGGAAGAAGAGGAGTCTTTCCTCTTGACC TCCGGGCTGGAGCTGTGGCTGGAGCTGATGCAGCACGTGCAAACGTACGA CTCTGAGCTACATGCCCTCTTTGGGCGGCTTCCTGTGGTTGCGGCGACAG CGGCGGGTGCGGCTGCTGCGGTGATAGGCGGCGCAGTGGGCGGGGTGGAG CCGTCGGAGCACATGAAGACGGAGATGGCGCTCGTCGAAGCATATACGCT CGTCGGCGGCGCGGACTTCCTGCAAGCTTACGGCGATCAGGTGAGCCGTT GGGTGGTTTGCTGAGAGGGCAGTTTTTGTGCTTGTCTTAAACCATGCAAG ATCAGTCGTATAGGAAAACAAAGTTAGCTGACGACGTGCGGGCATGCTGG AGTAGATTAGATACTGCATGGTAATGAAAATCGTGCTGGATTTGACGCCA TGCCCTCTGAAACACTGTGATCGCAGGTATGTGTGGTGTTTGCTTCCCTG GCGGGCGACGTGCGCCCCAAGGGAGCTGCCATTCTGGCTCGGACTGCGGA GACCGCCCTCATCTGCTTTCCTCGCGAATTCAGCTGCATGCTCGTGGCGC GAGGAGCAGCCGACTCGCTCCTGGCAGCGTGCATCGACGGCGGCGGCAGT CAGCAGCCCGACGCAGTGAAGGTGCAGTACCTGCCCGTTCTCTGCCGCGT GCTGCTCGGTGCACCCGAAGCTTTCGCCGCCGTCTTCGAGCGGCGGCCTG AGGGCGCCGGATCCGCACTGGAGGGTTTCGTGGCCACCATTGCGAGGTTG TTTGACGCGGCTGGCGCCGGCGGCGGCGGGGCGCGGCGCCGGAAGCTATG GGCACTGGCACTGCTCGGGCTGCTGCCGCTTGGCCTAATGTCGGCGCTGC AGCGGATGGACAGCATTGTGAACATATGCGTCGACGTGCTCACAGAGGCG GACGCCGGAAACGGCAACGGGGCTGAAGGCGGCGGGGGCGGCGGTGGCGG CGGCGGCGACGACGGCGACGGCGCGACGCACGCATTGCCGCGCAGCCTCA GGCGCCTGCTGGCATCCGATGACGCCTCCGATCGTAGCGGCTCAGAAAAT GACGAGGCCCACAGTGGCGGCGGCGGCGGTGGTGGGCGAAACGGTGAGTT GTCACGGCGGCCGCGGCGAGCATCGCTTCTGGCACGGCGCCGGCGGCGCG CATTGCTGACAGACCTTGTAGTGATGGCGGATCTCCGGGCGGCCGTGGTG ACAGCGATGGACCATTGCCGGGCGGCTGTTGGAACCGACTTATTTTCTGA AGCGATGAGCAGCTGCGAGCCCGTCTTGCTCGCTCAACTTCAAGCCGCAG TCGGCGGAACCGCAAGTGCGAACACGATAACATCAGGTCAGGGACTGTAA CGGTTGCGAAACAGCCAAAACTGCAGGTTCTTCCTTACGCCTGAGTGCAT CGGTTAAAGGATTGAGCCTAGCGCATCGACTAAAGCTGCAGGCCCGCACT CTTAAGACTGAACTCGGCACAATTGTGCTCGATCTAAAATGGACGATGGC AACAATGGGGCCCGCCCCGTGAGGCCGGGGCAAACGGTCGTCACCTACAT GGAAGCGATGGACGTGAAAGCGCCTGCTGCAAAACCATCAAACACGACCC CAAACACCCCCGCGGCCGTGCTGGATCCTTCAATTCCAACACAATCTCTT GGGTCGCTGACCTGGGAAGAACGAGTTGATAGTTTTCACCGTGCTTTAGG TTCTTGGTACGCGCCTGCGCTGATGGTGCTCATCGCGGCTATCGCATCGT GCGCGGCCGCTGCGATAACAACTTCAGCGGGAAACTATCTCAAAATTTCA ATGGAGTGCGAAAGCGAAGCGGGCGTGACTGTCACCAACGAGCTTGAAGT CGGCTTCCGCTTTTACACGGTAAGAAGAAAATTTATGACCGCTCTCGCAT ACCCCTTCTCAATTCTCACTTTTCGGCCCCTCGCTTCGTCTGCCCTTGTT TTCCCCTCAACAGTGGGGAGGTGGCGATTGCTCCCACCACCTCTCGGAAC TCAACGACGCCACGGGCAAGGCCGGCGACGTGACGGGCATCGGTCTTTCT CTGACCCTAGCGTCATTTTCCATCGCCTTTTGGGCGGTGCTCGCAGCGTC TTGCGGTTTTGCTGCCTGTGGCTGCCCGCTCTTCCAAGTTCTTACGGCGC TGCTTCTCTTCTGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1497:887..6300+

>mRNA_P-wetherbeei_contig1497.1.1 ID=mRNA_P-wetherbeei_contig1497.1.1|Name=mRNA_P-wetherbeei_contig1497.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3846bp|location=Sequence derived from alignment at P-wetherbeei_contig1497:887..6300+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCTACCGCCCGCGCTTTCCACAGGAAACAATGATCACGTTTCGAC
GATCTATCGCGCAATCGAGCACTGCACGCTCAGCCCGCTGCTTGAGGTCA
GACAGCCAGCGGAGGCCCTTCTCTCAGCATGCGAAGAAGTACCTGGATTT
TCAGACGTGCTGGTGGCCATCGCGGCGACTGAGACAGCGACTGCCGACGC
GCGAATAGCTGCCGTGATTCTTCTCAAGAAGCTGGTGCACGCGCGTTGGC
GCCAGCGGGGAGGCCGTGCGCGCAATGTCGCGCCAGAGGAGAAGCAGCGC
GTGCGGGCCTTCCTGCTTGTACAGCTCTCCGAGCCGGACCCCAGAGTCGC
GGCGCAGCTGGCTGTTCTGGCGGCGAAAGTTGCCCGAGCCGACTGGCCGA
GGGAATGGCCCGATCTCTTCCCGACACTGGTGGAGGGGGCCAGTAGCTCC
AACAATGCATTGCGCCAGGCGCGGTCGCTTTTGCTGCTGCAGCAGACGCT
CAAGGAGCTGACGACAAAGCGTATCGGGCTCGACCGGATGGCCTTCGTCC
GGGCCTGCGCGGATATGTTTGCGCCGCTTCGCGTCGTGTGGTTAGCACTC
CTCCCTGTCCTGGCGCAAGCGGCAGGCCCGGTCTCAACGTCCACAACAAC
GGCAGCAGCAGGAGCAAGAGGGTCAGGAACATCGGCAGGGATCGCTACCG
CCTGCGACTGCCTGCTGCTGGCCACCAAAGCGCTGTGCCTGGTGATGGTT
GAGGGGACCGGGCTCTTGGAACATCCAGAGGCGCCGTCGTTCTTCATGTC
GCTGCTGGAAGCAATGTCAAGCGCTATTTCACGTCTTTGCGCGCTCGGCC
GTGTCAGAGCGGTGGACGGTGCCGCATCCCACGACGTCGAGCAGGTGCAG
AAGATACTGCGTCGCCTCGCGAAGACGGCGGTGAAGGCACAAAAGTCGGA
CCCACTCGGCTTTCGACACTATTTGGCGGTCTACCTGCACTTTTTCTACG
GCCGCCTTGCCGAGGCGGCTGACGCGGCCCCTTCTGCCGCTATCAGCGCC
GGTGGACTCGGCGGAGGATGCGAAGGCGGCCGCGGGGGCAACGGAAATGA
CGAAGGGCTGCCGAACGACCCGTACCCGCACGACAGATTCACGATGCAGT
GTGCATGGTTCCTGTCCAACGTCCTGTCCTGCAGCGCGTACCGCAAGGAC
ACGCTCATGCAGGCCGCCGCCAAAGCGACCCCTGCGGCGTCGACGGCGGC
GATCAACACCGCCGCCGCGGCCAGCCGGGGCGGCCTCAGCGCCGGCCGGC
TCATCACGGCACGCGGGGACGTGGTGGTGACTGAAGATGTGGCCGCCGCC
GTCGGAACGGCGCTGCAAGAGTCCTTCACGCCCCCGCTCGTCGAGGCACT
GGTCGGGCTCTGCCTGCGGCGGCTCCTTCTGCTGACACCTGCGGAGGTAG
GAGAGTGGGAGTCCGATCCTGAAGGCTTCTTCACGCTCCAGGAAAGCCTT
GGCGCCACCGAATCGCTGCGAGTAAGCGGACAGCACCTCTTCCTGGCGCT
TCTGGAGAGCCCCGACGTCGGCCCTTCGGTAGTGGCACCTTTCCTCGTGC
GCGCTATTATGTCAACTGACGCGCTGGCCGCCTGCAACGCAGAGGCGACA
GCGGCGGAGGCGGCGGCTGCCGGAGCGTTCGCCGCGGGCGGCGTGGGCGG
CGGGCCGCCAAATTCCCCGCCGCCGCTGCCGCCGCAAGCACTGCTGGAAT
TGGACGCGCTGTACCAGGCTGCGGGCCTTGGGGCATCATCGCTGCAGTCG
GCGGGCCTCGATATCGCCGGCTGGTGGCGGAGCTACCTTGCGCCGGGCCT
CCAGCGGCTGGTGGAGGGGGCCGGCGTCGCCGCGCACCTTTGCGCAGGGC
AAGGCTCCTCGCCGCCCTCGCCGCTGCCCCGGCCCATTCTGCTGCGCCGA
TTTTTGTGGGTGGTGGGATGCTACGTCGATCAAATTGACCCGGCCGATCA
TGCACCTCTTGTCCGGGCCGTTGCCCACGTCCTGGCAATCGGCAGTGGTG
GTGGTTGCGGCGGCGACCACGACCGTGCGGTGGATGTGGTGGCGCGGCTG
GCGGCGGTGGCGGCGCTGTCGAGCGTGGTGGAACTGTGGACGGCGGACGT
AGCGGTGGTCATCGCCCCGCAGCTGGCGGCTTTGACGGAGGGCATGTGCC
GCCTCGTGGCTGCATTGGAGGAGCTCGAGACCCGCCAGCAGGTGCTGACG
GTCTTGGCGGCAGCTTACGAGAGATGCGCCGCCGAAGCGGGCGGCGGTGT
CGCCCTCGCCTCCAGCGCAGGGGCCGCCGCCCTCGCCGCGGTGGCGCACC
TGCCGGCCATTTGGCAGGGCACACAGCACCAGCCGCCTGTTCTGGTGCTC
TGCGTAACGCTTTTTACTCACGTCGTCAAATGCCTGGGGCTTCTGGCAAG
CGGCAAACTGGATGCCGCTGCCCCTGCCTCGGCTACCAACAGCAGTGGGG
GCGGCGGCACCAAGGTGTCCGGGCTGACGCCGGTAAACTCGCTCGCGTTG
GCGCTGCTTCGAGCCGCGCTCGCCCGATCATGCGTGGCGTCGCCGGGCCG
TCCCGAGGAGACCGCGGCCAGATCAGTGGCGTTCGTTTCACCGGTGGCGC
CGCTGGAAGAAGAGGAGTCTTTCCTCTTGACCTCCGGGCTGGAGCTGTGG
CTGGAGCTGATGCAGCACGTGCAAACGTACGACTCTGAGCTACATGCCCT
CTTTGGGCGGCTTCCTGTGGTTGCGGCGACAGCGGCGGGTGCGGCTGCTG
CGGTGATAGGCGGCGCAGTGGGCGGGGTGGAGCCGTCGGAGCACATGAAG
ACGGAGATGGCGCTCGTCGAAGCATATACGCTCGTCGGCGGCGCGGACTT
CCTGCAAGCTTACGGCGATCAGGTATGTGTGGTGTTTGCTTCCCTGGCGG
GCGACGTGCGCCCCAAGGGAGCTGCCATTCTGGCTCGGACTGCGGAGACC
GCCCTCATCTGCTTTCCTCGCGAATTCAGCTGCATGCTCGTGGCGCGAGG
AGCAGCCGACTCGCTCCTGGCAGCGTGCATCGACGGCGGCGGCAGTCAGC
AGCCCGACGCAGTGAAGGTGCAGTACCTGCCCGTTCTCTGCCGCGTGCTG
CTCGGTGCACCCGAAGCTTTCGCCGCCGTCTTCGAGCGGCGGCCTGAGGG
CGCCGGATCCGCACTGGAGGGTTTCGTGGCCACCATTGCGAGGTTGTTTG
ACGCGGCTGGCGCCGGCGGCGGCGGGGCGCGGCGCCGGAAGCTATGGGCA
CTGGCACTGCTCGGGCTGCTGCCGCTTGGCCTAATGTCGGCGCTGCAGCG
GATGGACAGCATTGTGAACATATGCGTCGACGTGCTCACAGAGGCGGACG
CCGGAAACGGCAACGGGGCTGAAGGCGGCGGGGGCGGCGGTGGCGGCGGC
GGCGACGACGGCGACGGCGCGACGCACGCATTGCCGCGCAGCCTCAGGCG
CCTGCTGGCATCCGATGACGCCTCCGATCGTAGCGGCTCAGAAAATGACG
AGGCCCACAGTGGCGGCGGCGGCGGTGGTGGGCGAAACGGTGAGTTGTCA
CGGCGGCCGCGGCGAGCATCGCTTCTGGCACGGCGCCGGCGGCGCGCATT
GCTGACAGACCTTGTAGTGATGGCGGATCTCCGGGCGGCCGTGGTGACAG
CGATGGACCATTGCCGGGCGGCTGTTGGAACCGACTTATTTTCTGAAGCG
ATGAGCAGCTGCGAGCCCGTCTTGCTCGCTCAACTTCAAGCCGCAGTCGG
CGGAACCGCAAGTGCGAACACGATAACATCAGGTCAGGGACTGTAA
back to top