mRNA_P-wetherbeei_contig14839.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14839.1.1
Unique NamemRNA_P-wetherbeei_contig14839.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14839.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14839contigP-wetherbeei_contig14839:7..1272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog112098.XP_008611711.1
PFAMsAnk,Ank_2,Ank_5,PARP,ZU5,zf-TRAF
Model size966
Max annot lvl2759|Eukaryota
KEGG koko:K08873
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.78e-08
EggNOG OGsCOG0666@1|root,KOG0297@1|root,KOG0297@2759|Eukaryota,KOG4177@2759|Eukaryota
EC2.7.11.1
Descriptionspectrin binding
Cds size966
COG categoryI
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.1327853-CDS-P-wetherbeei_contig14839:6..7771683186035.1327853-CDS-P-wetherbeei_contig14839:6..777Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14839 7..777 +
1683186035.1434126-CDS-P-wetherbeei_contig14839:1077..12721683186035.1434126-CDS-P-wetherbeei_contig14839:1077..1272Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14839 1078..1272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14839.1.1prot_P-wetherbeei_contig14839.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14839 7..1272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14839.1.1

>prot_P-wetherbeei_contig14839.1.1 ID=prot_P-wetherbeei_contig14839.1.1|Name=mRNA_P-wetherbeei_contig14839.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=322bp
MCGESVVARDAAEHRRSHCPMRPADCPECHAKVVACRLPRHRETLCPERA
VACPAGCGAEVAERRLAQHAATECELVTVACPLRCGSLMWRRLVDDHVAR
LCSERRASCRFGCGANVRAKDAKAHYESGADGGNCGGGGKSGAAAGSVDR
SCGDGPEEVGCPRMPRPCPDRCGALVARHDRPEHTAQYCPHRFVACPRGC
PLRPRAVDAAAHARNDCLLRPAECGGCGAAMQARRLEVHRSFECLHRLVN
CPACRQPLRLVDVPNHLENACQRRPVQCRQGCGHSVAAADLEEHHEMSCE
FRREPCPLRCGRMAPAAEMTAH
back to top

mRNA from alignment at P-wetherbeei_contig14839:7..1272+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14839.1.1 ID=mRNA_P-wetherbeei_contig14839.1.1|Name=mRNA_P-wetherbeei_contig14839.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1266bp|location=Sequence derived from alignment at P-wetherbeei_contig14839:7..1272+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCGGCGAGTCGGTCGTAGCGCGCGATGCCGCCGAGCACCGACGTAG
CCACTGCCCGATGCGCCCGGCGGATTGCCCCGAGTGCCACGCCAAGGTGG
TGGCATGCCGCCTGCCGCGGCACCGCGAGACGCTGTGCCCCGAGCGCGCG
GTTGCCTGCCCGGCCGGCTGCGGTGCCGAAGTCGCCGAGCGGCGGCTGGC
GCAGCACGCCGCCACCGAGTGCGAGCTGGTGACCGTCGCCTGCCCGCTGC
GCTGCGGCAGCCTGATGTGGCGGCGGCTCGTCGACGACCACGTCGCGCGC
CTCTGCAGCGAGCGGCGGGCATCCTGCCGGTTCGGCTGCGGAGCGAACGT
CCGGGCCAAGGATGCCAAGGCTCACTACGAGTCCGGAGCAGACGGCGGCA
ACTGCGGCGGCGGCGGCAAGTCTGGCGCCGCCGCCGGCTCCGTCGACCGC
AGTTGCGGCGACGGACCGGAAGAGGTGGGTTGTCCGCGGATGCCGCGGCC
GTGCCCTGACCGATGCGGCGCACTCGTCGCCCGCCACGACCGCCCGGAGC
ACACGGCGCAATACTGCCCCCACCGCTTCGTGGCCTGCCCCCGCGGCTGC
CCGCTGCGGCCGCGGGCCGTCGACGCCGCTGCCCACGCTCGAAACGACTG
CCTGCTGCGGCCGGCGGAGTGCGGCGGCTGCGGCGCAGCGATGCAGGCGC
GGCGGCTGGAGGTGCATCGTAGTTTCGAGTGCCTGCACCGCCTCGTCAAC
TGCCCGGCGTGCCGCCAGCCCGTGCCCGCCTTAGCGCTTGCCCGCCACCG
GGACGGAGGGGAACCGGACATCGGCGGCGACGGCGGTGGCAGGAGCGAAA
ATGCAGCTGATGACAGCAAGAACATTGTAGATAGTGGCAGGAAATGCAAG
TCTGCTACGCGCGGCAACCGGAAGGCCGGCGCCGGCAATGCTGCTGGCGG
CGACGACCACAGCGCAACCGGTGACCTCGGCACAGCGCGAAAGATTATCG
CCGCCTACGCCGCGGTTGCGCCCTGCCCGGAGCGCATCGTCAAGTGCCCC
AGCGCCGGCTGCCGCGCCAAGCTGCGCCTGGTAGACGTGCCGAACCACCT
GGAGAACGCCTGCCAGCGGCGGCCAGTGCAGTGCCGGCAGGGCTGCGGCC
ACTCGGTGGCCGCCGCAGATCTGGAGGAGCACCACGAGATGTCCTGCGAA
TTCCGGCGCGAGCCCTGCCCGCTGCGCTGCGGGCGAATGGCGCCCGCTGC
GGAGATGACAGCCCAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14839:7..1272+

>mRNA_P-wetherbeei_contig14839.1.1 ID=mRNA_P-wetherbeei_contig14839.1.1|Name=mRNA_P-wetherbeei_contig14839.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=966bp|location=Sequence derived from alignment at P-wetherbeei_contig14839:7..1272+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCGGCGAGTCGGTCGTAGCGCGCGATGCCGCCGAGCACCGACGTAG
CCACTGCCCGATGCGCCCGGCGGATTGCCCCGAGTGCCACGCCAAGGTGG
TGGCATGCCGCCTGCCGCGGCACCGCGAGACGCTGTGCCCCGAGCGCGCG
GTTGCCTGCCCGGCCGGCTGCGGTGCCGAAGTCGCCGAGCGGCGGCTGGC
GCAGCACGCCGCCACCGAGTGCGAGCTGGTGACCGTCGCCTGCCCGCTGC
GCTGCGGCAGCCTGATGTGGCGGCGGCTCGTCGACGACCACGTCGCGCGC
CTCTGCAGCGAGCGGCGGGCATCCTGCCGGTTCGGCTGCGGAGCGAACGT
CCGGGCCAAGGATGCCAAGGCTCACTACGAGTCCGGAGCAGACGGCGGCA
ACTGCGGCGGCGGCGGCAAGTCTGGCGCCGCCGCCGGCTCCGTCGACCGC
AGTTGCGGCGACGGACCGGAAGAGGTGGGTTGTCCGCGGATGCCGCGGCC
GTGCCCTGACCGATGCGGCGCACTCGTCGCCCGCCACGACCGCCCGGAGC
ACACGGCGCAATACTGCCCCCACCGCTTCGTGGCCTGCCCCCGCGGCTGC
CCGCTGCGGCCGCGGGCCGTCGACGCCGCTGCCCACGCTCGAAACGACTG
CCTGCTGCGGCCGGCGGAGTGCGGCGGCTGCGGCGCAGCGATGCAGGCGC
GGCGGCTGGAGGTGCATCGTAGTTTCGAGTGCCTGCACCGCCTCGTCAAC
TGCCCGGCGTGCCGCCAGCCCCTGCGCCTGGTAGACGTGCCGAACCACCT
GGAGAACGCCTGCCAGCGGCGGCCAGTGCAGTGCCGGCAGGGCTGCGGCC
ACTCGGTGGCCGCCGCAGATCTGGAGGAGCACCACGAGATGTCCTGCGAA
TTCCGGCGCGAGCCCTGCCCGCTGCGCTGCGGGCGAATGGCGCCCGCTGC
GGAGATGACAGCCCAC
back to top