mRNA_P-wetherbeei_contig10029.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10029.1.1
Unique NamemRNA_P-wetherbeei_contig10029.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10029.1.1 vs. uniprot
Match: A0A6V1RZC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RZC8_HETAK)

HSP 1 Score: 261 bits (668), Expect = 1.020e-86
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 1 
Query:    7 PAAPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDLSDRRQV 408
            P  PQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDL+DRRQV
Sbjct:   35 PGVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDLADRRQV 168
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BLAST of mRNA_P-wetherbeei_contig10029.1.1 vs. uniprot
Match: D7FMQ4_ECTSI (Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ4_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 4.800e-86
Identity = 129/134 (96.27%), Postives = 132/134 (98.51%), Query Frame = 1 
Query:    7 PAAPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDLSDRRQV 408
            PA PQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVR+ERGNDVV+MLVGNKTDL +RRQV
Sbjct:   11 PAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQV 144
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BLAST of mRNA_P-wetherbeei_contig10029.1.1 vs. uniprot
Match: A0A7S2UZT5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZT5_9STRA)

HSP 1 Score: 256 bits (655), Expect = 5.140e-85
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 1 
Query:    7 PAAPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDLSDRRQV 408
            P  PQI PLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMY+ DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKW+EDVR+ERGNDVVIMLVGNKTDLSDRRQV
Sbjct:   16 PGVPQITPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYMPDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWVEDVRNERGNDVVIMLVGNKTDLSDRRQV 149
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BLAST of mRNA_P-wetherbeei_contig10029.1.1 vs. uniprot
Match: A0A836CM24_9STRA (Rab6, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM24_9STRA)

HSP 1 Score: 251 bits (641), Expect = 5.690e-83
Identity = 123/131 (93.89%), Postives = 131/131 (100.00%), Query Frame = 1 
Query:   16 PQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDLSDRRQV 408
            PQ+APLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLN+S+WI+DVR+ERGN+VVIMLVGNKTDL+DRRQV
Sbjct:   17 PQVAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNSSEWIKDVRAERGNEVVIMLVGNKTDLADRRQV 147
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BLAST of mRNA_P-wetherbeei_contig10029.1.1 vs. uniprot
Match: A0A4D9D1C8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1C8_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.520e-81
Identity = 124/137 (90.51%), Postives = 131/137 (95.62%), Query Frame = 1 
Query:    1 TRPAA-PQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDLSDRRQV 408
            T PA+ PQI  LAKYKLVFLGDQ VGKTSIITRFMYD F+KNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKW++DVR+ERGNDV+IMLVGNKTDLSDRRQV
Sbjct:   11 TSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQV 147
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BLAST of mRNA_P-wetherbeei_contig10029.1.1 vs. uniprot
Match: A0A7S2HHR8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHR8_9STRA)

HSP 1 Score: 245 bits (625), Expect = 1.770e-80
Identity = 121/131 (92.37%), Postives = 130/131 (99.24%), Query Frame = 1 
Query:   16 PQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDLSDRRQV 408
            P+IAPLAKYKLVFLGDQSVGKTSIITRFMYD F+K+YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDIT+RASFLN+SKWI++VR+ERGNDVV+MLVGNKTDLSDRRQV
Sbjct:   20 PKIAPLAKYKLVFLGDQSVGKTSIITRFMYDQFEKSYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRASFLNSSKWIDEVRTERGNDVVLMLVGNKTDLSDRRQV 150
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BLAST of mRNA_P-wetherbeei_contig10029.1.1 vs. uniprot
Match: A0A7S1TP34_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP34_9STRA)

HSP 1 Score: 243 bits (621), Expect = 2.400e-80
Identity = 119/131 (90.84%), Postives = 128/131 (97.71%), Query Frame = 1 
Query:   16 PQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDLSDRRQV 408
            P IAPLAKYKLVFLGDQ+VGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYL+DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITN ASFLNTSKWIEDVR+ERG+DV+I+LVGNKTD++DRR V
Sbjct:   14 PSIAPLAKYKLVFLGDQNVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLDDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNSASFLNTSKWIEDVRNERGDDVLIVLVGNKTDMADRRAV 144
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BLAST of mRNA_P-wetherbeei_contig10029.1.1 vs. uniprot
Match: W7U9T7_9STRA (Small gtp-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9T7_9STRA)

HSP 1 Score: 248 bits (632), Expect = 3.010e-80
Identity = 124/137 (90.51%), Postives = 131/137 (95.62%), Query Frame = 1 
Query:    1 TRPAA-PQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDLSDRRQV 408
            T PA+ PQI  LAKYKLVFLGDQ VGKTSIITRFMYD F+KNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKW++DVR+ERGNDV+IMLVGNKTDLSDRRQV
Sbjct:  104 TSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQV 240
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BLAST of mRNA_P-wetherbeei_contig10029.1.1 vs. uniprot
Match: A0A2P4YQJ8_9STRA (Rab6 family GTPase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YQJ8_9STRA)

HSP 1 Score: 245 bits (625), Expect = 3.760e-80
Identity = 121/131 (92.37%), Postives = 126/131 (96.18%), Query Frame = 1 
Query:   16 PQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDLSDRRQV 408
            PQIAPLAKYKLVFLGDQ VGKTS+ITRFMYD FD  YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKWIEDVR+ERG DVVIMLVGNKTD+SDRRQV
Sbjct:   37 PQIAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVIMLVGNKTDISDRRQV 167
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BLAST of mRNA_P-wetherbeei_contig10029.1.1 vs. uniprot
Match: A0A484ECD5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ECD5_BRELC)

HSP 1 Score: 244 bits (624), Expect = 3.970e-80
Identity = 121/131 (92.37%), Postives = 126/131 (96.18%), Query Frame = 1 
Query:   16 PQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDLSDRRQV 408
            PQIAPLAKYKLVFLGDQ VGKTS+ITRFMYD FD  YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKWIEDVR+ERG DVVIMLVGNKTD+SDRRQV
Sbjct:   34 PQIAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVIMLVGNKTDVSDRRQV 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10029.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1RZC8_HETAK1.020e-8697.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FMQ4_ECTSI4.800e-8696.27Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UZT5_9STRA5.140e-8594.78Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CM24_9STRA5.690e-8393.89Rab6, rab family GTPase n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D1C8_9STRA1.520e-8190.51Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2HHR8_9STRA1.770e-8092.37Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1TP34_9STRA2.400e-8090.84Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W7U9T7_9STRA3.010e-8090.51Small gtp-binding protein n=1 Tax=Nannochloropsis ... [more]
A0A2P4YQJ8_9STRA3.760e-8092.37Rab6 family GTPase n=1 Tax=Phytophthora palmivora ... [more]
A0A484ECD5_BRELC3.970e-8092.37Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10029contigP-wetherbeei_contig10029:533..1184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FMQ4
Preferred nameRab6
PFAMsRas
Model size408
Max annot lvl2759|Eukaryota
KEGG koko:K07893,ko:K07976
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0005911,GO:0006810,GO:0006890,GO:0006891,GO:0008150,GO:0009506,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0017076,GO:0019001,GO:0030054,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0042147,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055044,GO:0071944,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1901265,GO:1901363
Exons2
Evalue7.87e-87
EggNOG OGsKOG0094@1|root,KOG0094@2759|Eukaryota
Descriptionretrograde vesicle-mediated transport, Golgi to ER
Cds size408
COG categoryS
BRITEko00000,ko04031,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185850.6063097-CDS-P-wetherbeei_contig10029:532..8111683185850.6063097-CDS-P-wetherbeei_contig10029:532..811Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10029 533..811 -
1683185850.6147432-CDS-P-wetherbeei_contig10029:1055..11841683185850.6147432-CDS-P-wetherbeei_contig10029:1055..1184Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10029 1056..1184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10029.1.1prot_P-wetherbeei_contig10029.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10029 533..1184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10029.1.1

>prot_P-wetherbeei_contig10029.1.1 ID=prot_P-wetherbeei_contig10029.1.1|Name=mRNA_P-wetherbeei_contig10029.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
TRPAAPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDF
LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRAS
FLNTSKWIEDVRSERGNDVVIMLVGNKTDLSDRRQV
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mRNA from alignment at P-wetherbeei_contig10029:533..1184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10029.1.1 ID=mRNA_P-wetherbeei_contig10029.1.1|Name=mRNA_P-wetherbeei_contig10029.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=652bp|location=Sequence derived from alignment at P-wetherbeei_contig10029:533..1184- (Phaeothamnion wetherbeei SAG_119_79)
ACAAGACCGGCGGCGCCACAGATCGCTCCGTTAGCGAAGTATAAGCTCGT
ATTTCTAGGGGACCAAAGCGTCGGCAAGACGAGCATCATCACGCGGTTTA
TGTATGACAACTTCGACAAAAACTACCAGGTGCGTTTTTAAAAGGTCTTC
TTTTACTGTTGAGTGAGGCCCTCCTCGCCTGCGTGTAGAGTTGGCGCTTC
GGAGGGAAGAATAGTGCGACCACGTCAAGCTACTTAATTATTTGTGTGGG
CTCTTTTCAAATTCCCGACTGCGCAAACCCTGGCATAGCTCCCAATCCTT
TTTCGCACCCCCTTACCCTGTCACATCTCTGGTTAATTGCCTCTCTGCCT
TTCGCCATGACCATATCACGCAGGCAACAATCGGGATCGACTTTTTGTCG
AAGACAATGTACCTGGAAGACCGCACCGTGCGGCTCCAGCTATGGGATAC
GGCGGGGCAGGAGCGGTTCCGGAGCCTGATCCCGTCCTACATCCGGGACA
GCTCCGTCGCGGTAATAGTCTACGACATTACGAACCGCGCGTCGTTTCTC
AACACGTCGAAGTGGATCGAGGACGTGCGCAGCGAGCGCGGGAACGACGT
GGTCATCATGCTCGTCGGGAACAAGACAGACCTCTCGGACCGACGCCAGG
TA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10029:533..1184-

>mRNA_P-wetherbeei_contig10029.1.1 ID=mRNA_P-wetherbeei_contig10029.1.1|Name=mRNA_P-wetherbeei_contig10029.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig10029:533..1184- (Phaeothamnion wetherbeei SAG_119_79)
ACAAGACCGGCGGCGCCACAGATCGCTCCGTTAGCGAAGTATAAGCTCGT
ATTTCTAGGGGACCAAAGCGTCGGCAAGACGAGCATCATCACGCGGTTTA
TGTATGACAACTTCGACAAAAACTACCAGGCAACAATCGGGATCGACTTT
TTGTCGAAGACAATGTACCTGGAAGACCGCACCGTGCGGCTCCAGCTATG
GGATACGGCGGGGCAGGAGCGGTTCCGGAGCCTGATCCCGTCCTACATCC
GGGACAGCTCCGTCGCGGTAATAGTCTACGACATTACGAACCGCGCGTCG
TTTCTCAACACGTCGAAGTGGATCGAGGACGTGCGCAGCGAGCGCGGGAA
CGACGTGGTCATCATGCTCGTCGGGAACAAGACAGACCTCTCGGACCGAC
GCCAGGTA
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