mRNA_P-wetherbeei_contig14748.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14748.1.1
Unique NamemRNA_P-wetherbeei_contig14748.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14748.1.1 vs. uniprot
Match: W7T6I2_9STRA (Spindle pole body component n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6I2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.720e-35
Identity = 66/110 (60.00%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:   10 LMTERFGLWRHLTALKKFMLLGQGDFVTCLMDQLGPQLAARASKIYSRHNLSGIVDSALRSSNAQYEPTDVLDRVGVRLLEPEGGDDGWKVFVLDYVLESPVTAVVHARA 339
            LM  R+ L  HL ALKKF+ L QGDFVTCL+D +GP+L+  A ++Y RH+L+G +++ALR+SNAQYE TD+L+RVGVRLL   GG++GW+VFVLDY + +PV+AVVH +A
Sbjct:  200 LMGPRYQLMAHLRALKKFITLAQGDFVTCLLDAVGPELSKSADQLY-RHDLTGKLEAALRTSNAQYEDTDILNRVGVRLLPASGGEEGWEVFVLDYHVHAPVSAVVHRKA 308
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BLAST of mRNA_P-wetherbeei_contig14748.1.1 vs. uniprot
Match: I2CPQ2_NANGC (Spindle pole body component (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPQ2_NANGC)

HSP 1 Score: 129 bits (323), Expect = 1.290e-34
Identity = 60/97 (61.86%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:   49 ALKKFMLLGQGDFVTCLMDQLGPQLAARASKIYSRHNLSGIVDSALRSSNAQYEPTDVLDRVGVRLLEPEGGDDGWKVFVLDYVLESPVTAVVHARA 339
            ALKKF+ L QGDFVTCL+D +GP+L+  A ++Y RH+L+G +++ALR+SNAQYE TD+L+RVGVRLL   GG++GW+VFVLDY + +PV+AVVH +A
Sbjct:    2 ALKKFITLAQGDFVTCLLDAVGPELSKSADQLY-RHDLTGKLEAALRTSNAQYEDTDILNRVGVRLLPASGGEEGWEVFVLDYHVHAPVSAVVHRKA 97
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BLAST of mRNA_P-wetherbeei_contig14748.1.1 vs. uniprot
Match: A0A7S1XYE1_9STRA (Spindle pole body component n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYE1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.020e-30
Identity = 63/112 (56.25%), Postives = 82/112 (73.21%), Query Frame = 1 
Query:   13 MTERFGLWRHLTALKKFMLLGQGDFVTCLMDQLGPQLAARASKIYSRHNLSGIVDSALRSSNA-QYEPTDVLDRVGVRLLEPEGGDDGWKVFVLDYVLESPVTAVVHARATM 345
            M  R+GL +HL ALK+F+LLGQGDFV  L++ LGP+L+ RAS++Y RHNL+G VDSA+RSSNA +    DVL+RVGVRLLE   GD GW  F LDY +  P+  V++  A +
Sbjct:   36 MLNRWGLVKHLDALKRFLLLGQGDFVETLINTLGPELSKRASQVY-RHNLTGAVDSAVRSSNAARVYSNDVLERVGVRLLEGSPGDTGWDTFTLDYYVSQPLDGVINPAAQL 146
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BLAST of mRNA_P-wetherbeei_contig14748.1.1 vs. uniprot
Match: A0A7R9UD18_9STRA (Spindle pole body component n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD18_9STRA)

HSP 1 Score: 119 bits (298), Expect = 7.110e-30
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1 
Query:   13 MTERFGLWRHLTALKKFMLLGQGDFVTCLMDQLGPQLAARASKIYSRHNLSGIVDSALRSSNAQY-EPTDVLDRVGVRLLEPEGGDDGWKVFVLDYVLESPVTAVVHARATM 345
            M   +GL +HL ALK+F+LLGQGDFV  L++ +GP+L+ RAS++Y RHNL+G VD A+R SNA +   +DVL+RVGVRLLE   GD GW+VF LDY +  P+  V++  A +
Sbjct:   22 MLNEWGLVKHLDALKRFLLLGQGDFVEPLINAIGPELSKRASQVY-RHNLTGAVDGAVRGSNAAFIYSSDVLERVGVRLLEASPGDSGWEVFTLDYYVSKPLDGVINPMAQL 132
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BLAST of mRNA_P-wetherbeei_contig14748.1.1 vs. uniprot
Match: A0A1S8VP73_9FUNG (Spindle pole body component n=2 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VP73_9FUNG)

HSP 1 Score: 119 bits (299), Expect = 5.030e-29
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 1 
Query:   19 ERFGLWRHLTALKKFMLLGQGDFVTCLMDQLGPQLAARASKIYSRHNLSGIVDSALRSSNAQYEPTDVLDRVGVRLLEPEGGDDGWKVFVLDYVLESPVTAVVHARA 339
            E++ L  HL ALK+F+LLGQGDFV  L+D LG  L+  AS +Y RHNLSG ++ A+RSSNAQ++  DVL R+ VRLLE  GGD GW VF LDY ++SP+  ++  +A
Sbjct:  602 EKYNLMEHLLALKRFVLLGQGDFVQYLLDSLGSSLSKPASTLY-RHNLSGALEIAIRSSNAQHQDADVLKRLDVRLLEATGGDTGWDVFTLDYHVDSPINTILTQQA 707
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BLAST of mRNA_P-wetherbeei_contig14748.1.1 vs. uniprot
Match: A0A3R7JQA7_9STRA (Spindle pole body component n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JQA7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.600e-28
Identity = 56/109 (51.38%), Postives = 81/109 (74.31%), Query Frame = 1 
Query:   19 ERFGLWRHLTALKKFMLLGQGDFVTCLMDQLGPQLAARASKIYSRHNLSGIVDSALRSSNAQYEPTDVLDRVGVRLLEPEGGDDGWKVFVLDYVLESPVTAVVHARATM 345
            E++ L  H  ALK+++LLGQGDF+  LMD LGP+L+ R S++Y RH L+ ++++AL SSNA++EPTD+L R+ V LL+P   D GW +F L Y L++PV +V+ A ATM
Sbjct:  174 EKYRLLDHCQALKRYLLLGQGDFIQYLMDLLGPELSKRGSQVY-RHTLTNVLETALNSSNAKFEPTDILGRLDVELLQPSSADTGWDIFCLHYNLQAPVNSVIPA-ATM 280
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BLAST of mRNA_P-wetherbeei_contig14748.1.1 vs. uniprot
Match: A0A162PXG4_PHYB8 (Spindle pole body component (Fragment) n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162PXG4_PHYB8)

HSP 1 Score: 115 bits (287), Expect = 1.270e-27
Identity = 55/110 (50.00%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:   10 LMTERFGLWRHLTALKKFMLLGQGDFVTCLMDQLGPQLAARASKIYSRHNLSGIVDSALRSSNAQYEPTDVLDRVGVRLLEPEGGDDGWKVFVLDYVLESPVTAVVHARA 339
            L+  ++ L  HL ALK+++LLGQGDF+  LMD LGP L+  A+K++ RHNL+G++++A+R+SNAQY+  D+L+R+ VRLLE    D GW VF LDY ++SP+  V   +A
Sbjct:  303 LLKRKYKLMEHLRALKRYLLLGQGDFIQHLMDTLGPNLSMPANKLF-RHNLTGVLETAIRASNAQYDDVDILNRLDVRLLEISPEDLGWDVFTLDYHVDSPINTVFSQQA 411
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BLAST of mRNA_P-wetherbeei_contig14748.1.1 vs. uniprot
Match: A0A835YR49_9STRA (Spindle pole body component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR49_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.540e-27
Identity = 60/108 (55.56%), Postives = 76/108 (70.37%), Query Frame = 1 
Query:   40 HLTALKKFMLLGQGDFVTCLMDQLG-----PQLAARASKIYSRHNLSGIVDSALRSSNAQYEPTDVLDRVGVRLLEPEGGDDGWKVFVLDYVLESPVTAVVHARATMK 348
            HL ALKKF+LLGQGDFVT L+D LG      +L  RAS +Y  HNLSGIVDSALR    QYE  ++LDRV V+LL+    + GW VF L Y +++P+TAV+HA A ++
Sbjct:  624 HLRALKKFLLLGQGDFVTALLDTLGLDTLGVELGKRASTVY-HHNLSGIVDSALRGGAVQYEAPEILDRVAVKLLDAGHNETGWDVFSLCYTVQAPLTAVIHASAMLQ 730
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BLAST of mRNA_P-wetherbeei_contig14748.1.1 vs. uniprot
Match: F4P647_BATDJ (Spindle pole body component n=3 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4P647_BATDJ)

HSP 1 Score: 115 bits (287), Expect = 2.090e-27
Identity = 56/103 (54.37%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:   19 ERFGLWRHLTALKKFMLLGQGDFVTCLMDQLGPQLAARASKIYSRHNLSGIVDSALRSSNAQYEPTDVLDRVGVRLLEPEGGDDGWKVFVLDYVLESPVTAVV 327
            E+F L  HL ALK+F+LLGQGDFV CL+D LG  L+  AS +Y  HNL+G +++A+RSSNA+Y  +D+L R+ VRLLE   GD GW VF LDY ++SP+  ++
Sbjct:  574 EKFKLMEHLQALKRFVLLGQGDFVQCLLDSLGSSLSKPASSLYL-HNLTGTLETAIRSSNARYFDSDILRRLDVRLLEATEGDFGWDVFALDYQVDSPINTIL 675
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BLAST of mRNA_P-wetherbeei_contig14748.1.1 vs. uniprot
Match: A0A167VEZ5_9PEZI (Spindle pole body component n=1 Tax=Sporothrix insectorum RCEF 264 TaxID=1081102 RepID=A0A167VEZ5_9PEZI)

HSP 1 Score: 115 bits (287), Expect = 2.110e-27
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1 
Query:    1 VMWLMTERFGLWRHLTALKKFMLLGQGDFVTCLMDQLGPQLAARASKIYSRHNLSGIVDSALRSSNAQYEPTDVLDRVGVRLLEPEGGDDGWKVFVLDYVLESPVTAVVHARAT 342
            +M LMT++F L+ HL ALKK++LLGQGDFV  LM+ L P L   A+  Y RH L+  +D ALR SNAQ+EP ++L R+  R+L+P  GD GW  F L+Y LE+PV  VV A A+
Sbjct:  628 LMHLMTDKFHLFAHLGALKKYVLLGQGDFVALLMESLAPNLDRPATAQY-RHTLTSQLDHALRGSNAQFEPPEILRRLDARMLQPSHGDTGWDCFTLEYKLEAPVDCVVTAWAS 740
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14748.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T6I2_9STRA1.720e-3560.00Spindle pole body component n=3 Tax=Monodopsidacea... [more]
I2CPQ2_NANGC1.290e-3461.86Spindle pole body component (Fragment) n=1 Tax=Nan... [more]
A0A7S1XYE1_9STRA1.020e-3056.25Spindle pole body component n=2 Tax=Phaeomonas par... [more]
A0A7R9UD18_9STRA7.110e-3053.57Spindle pole body component n=1 Tax=Pinguiococcus ... [more]
A0A1S8VP73_9FUNG5.030e-2955.14Spindle pole body component n=2 Tax=Batrachochytri... [more]
A0A3R7JQA7_9STRA4.600e-2851.38Spindle pole body component n=3 Tax=Phytophthora k... [more]
A0A162PXG4_PHYB81.270e-2750.00Spindle pole body component (Fragment) n=1 Tax=Phy... [more]
A0A835YR49_9STRA1.540e-2755.56Spindle pole body component n=1 Tax=Tribonema minu... [more]
F4P647_BATDJ2.090e-2754.37Spindle pole body component n=3 Tax=Batrachochytri... [more]
A0A167VEZ5_9PEZI2.110e-2752.63Spindle pole body component n=1 Tax=Sporothrix ins... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14748contigP-wetherbeei_contig14748:591..1336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog109871.XP_006679918.1
Preferred nameSPC98
PFAMsSpc97_Spc98
Model size351
Max annot lvl4751|Fungi
KEGG koko:K16570
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005822,GO:0005824,GO:0005825,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007163,GO:0008092,GO:0008150,GO:0008275,GO:0008360,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0022402,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0031109,GO:0031122,GO:0032153,GO:0032155,GO:0032991,GO:0034622,GO:0043015,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044732,GO:0046785,GO:0048285,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051225,GO:0051258,GO:0051321,GO:0051415,GO:0051418,GO:0061496,GO:0061497,GO:0065003,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071957,GO:0071963,GO:0090307,GO:0097435,GO:0140014,GO:1902850,GO:1903047
Exons2
Evalue3.29e-28
EggNOG OGsKOG2000@1|root,KOG2000@2759|Eukaryota,38BDK@33154|Opisthokonta,3NWMG@4751|Fungi
Descriptionspindle pole body component
Cds size348
COG categoryZ
BRITEko00000,ko03036,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186032.5688653-UTR-P-wetherbeei_contig14748:590..5931683186032.5688653-UTR-P-wetherbeei_contig14748:590..593Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14748 591..593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186032.5779748-CDS-P-wetherbeei_contig14748:593..7391683186032.5779748-CDS-P-wetherbeei_contig14748:593..739Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14748 594..739 +
1683186032.5858214-CDS-P-wetherbeei_contig14748:1134..13361683186032.5858214-CDS-P-wetherbeei_contig14748:1134..1336Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14748 1135..1336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14748.1.1prot_P-wetherbeei_contig14748.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14748 594..1336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14748.1.1

>prot_P-wetherbeei_contig14748.1.1 ID=prot_P-wetherbeei_contig14748.1.1|Name=mRNA_P-wetherbeei_contig14748.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MWLMTERFGLWRHLTALKKFMLLGQGDFVTCLMDQLGPQLAARASKIYSR
HNLSGIVDSALRSSNAQYEPTDVLDRVGVRLLEPEGGDDGWKVFVLDYVL
ESPVTAVVHARATMK*
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mRNA from alignment at P-wetherbeei_contig14748:591..1336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14748.1.1 ID=mRNA_P-wetherbeei_contig14748.1.1|Name=mRNA_P-wetherbeei_contig14748.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=746bp|location=Sequence derived from alignment at P-wetherbeei_contig14748:591..1336+ (Phaeothamnion wetherbeei SAG_119_79)
GTGATGTGGCTGATGACGGAGCGGTTCGGGCTGTGGCGGCACCTGACGGC
ACTCAAGAAGTTCATGCTGCTCGGGCAGGGCGACTTCGTCACGTGCCTCA
TGGACCAGCTCGGCCCGCAGCTCGCCGCCCGTGCCAGCAAGATCTACAGG
TTGGTCACCGTCTTCTTTTGCTCCTCTTCCTGTGTGTAGTCAAACGTTTC
ATTTCAATCTTTCCAGCATTTGCCTTTTTTTCTGTCAGAGCTACCATGTG
TGTCCCTTCCTCGAGCGCATTTCCGGACATCCGTGAAACCGTTTGCTTTT
AACGCGTGTGTCATATTCCCATCTGCCGAATTTGGCAGCGTTGGATGCTC
AAACCGCATCACGATTCTTCAGCCGCGTCGCCACCCTCCGCCCAGCCTCA
TGTCTGTTTTCCGTGGCCGTCCCGCGGTTGGTCTTCTTCTCTGACCGCCC
CGCCGAATGCTCACCGAAACTTTCGCCGGATCGCACACTGAGAAACTCCT
TCCCGAAAACCACTTCCCGCCACTCCATAACCTCTCCGATCAAGCAGGCA
CAACTTATCAGGCATCGTGGACTCTGCGTTGCGTTCTTCCAACGCACAGT
ACGAGCCGACGGACGTGCTGGACCGCGTCGGGGTGCGGCTGCTGGAGCCC
GAGGGCGGCGACGATGGCTGGAAGGTCTTCGTGCTCGATTACGTCCTCGA
GTCGCCCGTCACCGCCGTCGTGCACGCCAGGGCCACCATGAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14748:591..1336+

>mRNA_P-wetherbeei_contig14748.1.1 ID=mRNA_P-wetherbeei_contig14748.1.1|Name=mRNA_P-wetherbeei_contig14748.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig14748:591..1336+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGCTGATGACGGAGCGGTTCGGGCTGTGGCGGCACCTGACGGCACT
CAAGAAGTTCATGCTGCTCGGGCAGGGCGACTTCGTCACGTGCCTCATGG
ACCAGCTCGGCCCGCAGCTCGCCGCCCGTGCCAGCAAGATCTACAGCAGG
CACAACTTATCAGGCATCGTGGACTCTGCGTTGCGTTCTTCCAACGCACA
GTACGAGCCGACGGACGTGCTGGACCGCGTCGGGGTGCGGCTGCTGGAGC
CCGAGGGCGGCGACGATGGCTGGAAGGTCTTCGTGCTCGATTACGTCCTC
GAGTCGCCCGTCACCGCCGTCGTGCACGCCAGGGCCACCATGAAGTGA
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