mRNA_P-wetherbeei_contig14602.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14602.1.1
Unique NamemRNA_P-wetherbeei_contig14602.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14602.1.1 vs. uniprot
Match: D7FWX3_ECTSI (Axonemal 1-beta dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX3_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 9.870e-31
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    7 YFLRPEGVQLTARNVGDAMRYGVVSGQMVNSLMRLMQGVFGPKVFARQQTWPESVKNELTSHFHRFMASLVETSNQARGKTVLYLP 264
            YF+RPEG  LT   + D ++YG++SGQ V+SL++L+ GVF PKVF RQ  WPESVKN+LT HFHRFMASLVE SNQA+GKTV+YLP
Sbjct:  187 YFVRPEGATLTPATLKD-VQYGLISGQAVHSLLQLLHGVFSPKVFKRQVGWPESVKNDLTGHFHRFMASLVEMSNQAKGKTVMYLP 271          
BLAST of mRNA_P-wetherbeei_contig14602.1.1 vs. uniprot
Match: A0A6P5ALE7_BRABE (dynein heavy chain 2, axonemal-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5ALE7_BRABE)

HSP 1 Score: 86.7 bits (213), Expect = 1.220e-18
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 VAYFLRPEGVQLTARNVGDAMRYGVVSGQMVNSLMRLMQGVFGPKVFARQQTWPESV--------KNELTSHFHRFMASLVETSNQARGKTVLYLP 264
            + YF+RPEGV++TA N    ++YG V  Q + SL+RLM GV+ P +F   ++WP+S+        KN+ ++  H+F+A+L +T  +  G TVLY+P
Sbjct:  130 LTYFIRPEGVEITAENFHKRVQYGTVKSQYIESLLRLMTGVYAP-IFFENKSWPDSILVITPSGIKNDFSAQLHKFLANLTDTRYKMEGHTVLYIP 224          
BLAST of mRNA_P-wetherbeei_contig14602.1.1 vs. uniprot
Match: UPI001CFC4664 (dynein axonemal heavy chain 2 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFC4664)

HSP 1 Score: 87.8 bits (216), Expect = 2.660e-18
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 VAYFLRPEGVQLTARNVGDAMRYGVVSGQMVNSLMRLMQGVFGPKVFARQQTWPESVKNELTSHFHRFMASLVETSNQARGKTVLYLP 264
            + YF+R EG  LT +N    ++ G + G  V SL+RLM G++ P +F    +WPES+KN  ++H HRF+A L +T  +  G TVLY+P
Sbjct:  139 ITYFIRKEGANLTTKNFMHVVQTGTIRGSYVESLLRLMNGIYTPLIF-NATSWPESIKNNFSTHMHRFLACLTDTRYKLEGHTVLYIP 225          
BLAST of mRNA_P-wetherbeei_contig14602.1.1 vs. uniprot
Match: UPI000C9E5C3C (dynein heavy chain 2, axonemal isoform X3 n=1 Tax=Equus caballus TaxID=9796 RepID=UPI000C9E5C3C)

HSP 1 Score: 87.4 bits (215), Expect = 3.620e-18
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 VAYFLRPEGVQLTARNVGDAMRYGVVSGQMVNSLMRLMQGVFGPKVFARQQTWPESVKNELTSHFHRFMASLVETSNQARGKTVLYLP 264
            + YF+R   V +T  N    +++G V G  + +L+RL+ GVF P++F    TWPES++N  TSH HRF+A L +T  +  G TVLY+P
Sbjct:  134 IVYFIRQAPVPITPENFEATVQFGTVRGSYIPALLRLLNGVFAPQIFTNT-TWPESIRNNFTSHLHRFLACLTDTRYKLEGHTVLYIP 220          
BLAST of mRNA_P-wetherbeei_contig14602.1.1 vs. uniprot
Match: A0A8C8SM12_9SAUR (Dynein axonemal heavy chain 2 n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8SM12_9SAUR)

HSP 1 Score: 85.1 bits (209), Expect = 2.350e-17
Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 VAYFLRPEGVQLTARNVGDAMRYGVVSGQMVNSLMRLMQGVFGPKVFARQQTWPESVKNELTSHFHRFMASLVETSNQARGKTVLYLP 264
            + YF+R E  ++TA N    +++G V    ++SLMR++  VF P++F R  TWPES+KNE  S  + FM S+ +T ++ +G+TVLY+P
Sbjct:  185 LTYFIRHENAEITAENFQKTVQFGTVRRPYIDSLMRILNNVFLPRLF-RNATWPESIKNEFFSEIYHFMTSITDTRSKMKGRTVLYIP 271          
BLAST of mRNA_P-wetherbeei_contig14602.1.1 vs. uniprot
Match: A0A8B6HBF9_MYTGA (Dynein heavy chain, axonemal (Fragment) n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6HBF9_MYTGA)

HSP 1 Score: 84.3 bits (207), Expect = 4.340e-17
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    1 VAYFLRPEGV-QLTARNVGDAMRYGVVSGQMVNSLMRLMQGVFGPKVFARQQTWPESVKNELTSHFHRFMASLVETSNQARGKTVLYLP 264
            + YF++ +GV ++T  N     +YG V GQ + SL+RLM G++ P  F    TWP+S+KN+ ++  H+F+A+L +T  +  GKTVLY+P
Sbjct:  162 MTYFIKGDGVKEVTTENFHHIFQYGTVKGQHIESLLRLMMGIYAPAFF-ENTTWPDSIKNDFSAQLHKFLANLTDTRWKLEGKTVLYIP 249          
BLAST of mRNA_P-wetherbeei_contig14602.1.1 vs. uniprot
Match: A0A4D9DKB5_9SAUR (Long-chain fatty acid--CoA ligase n=1 Tax=Platysternon megacephalum TaxID=55544 RepID=A0A4D9DKB5_9SAUR)

HSP 1 Score: 81.3 bits (199), Expect = 4.670e-17
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 VAYFLRPEGVQLTARNVGDAMRYGVVSGQMVNSLMRLMQGVFGPKVFARQQTWPESVKNELTSHFHRFMASLVETSNQARGKTVLYLP 264
            + YF+R E  ++TA N    +++G V    ++SLMR++  VF P++F     WPES+KNE  S  + FM SL +T ++ +G+TVLY+P
Sbjct:  100 LTYFIRHETAEITAENFQKTVQFGTVRRPYIDSLMRILNSVFLPRLF-HNTNWPESIKNEFFSEIYHFMTSLTDTRSKMKGRTVLYIP 186          
BLAST of mRNA_P-wetherbeei_contig14602.1.1 vs. uniprot
Match: A0A4X2K5X6_VOMUR (Dynein axonemal heavy chain 2 n=1 Tax=Vombatus ursinus TaxID=29139 RepID=A0A4X2K5X6_VOMUR)

HSP 1 Score: 84.0 bits (206), Expect = 5.980e-17
Identity = 34/88 (38.64%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 VAYFLRPEGVQLTARNVGDAMRYGVVSGQMVNSLMRLMQGVFGPKVFARQQTWPESVKNELTSHFHRFMASLVETSNQARGKTVLYLP 264
            + YF+R   V +T  N    +++G V G  + +L+RL+ G++ P +F+   TWPES++N+ +SH H+F+A L +T ++  G TVLY+P
Sbjct:   62 IMYFMRQSPVPITCENFEVTVQFGTVRGSYIPALLRLLNGIYAPHLFSNT-TWPESIRNQFSSHLHKFLACLTDTRHKLEGHTVLYIP 148          
BLAST of mRNA_P-wetherbeei_contig14602.1.1 vs. uniprot
Match: A0A8J1UFG9_OWEFU (Ofus.G12423 protein (Fragment) n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UFG9_OWEFU)

HSP 1 Score: 83.2 bits (204), Expect = 1.100e-16
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    1 VAYFLRPEGV-QLTARNVGDAMRYGVVSGQMVNSLMRLMQGVFGPKVFARQQTWPESVKNELTSHFHRFMASLVETSNQARGKTVLYLP 264
            + YF++   V +LT  N    ++YG VSG  + SL+RLM G++ P +F    +WP+S+KN+ ++  H+F+ASL +T  +  GKTVLY+P
Sbjct:  148 LTYFIKKNAVPELTMENFKGCVQYGTVSGMHIESLLRLMTGIYAP-IFFENTSWPDSIKNDFSAQLHKFLASLTDTRWKLEGKTVLYIP 235          
BLAST of mRNA_P-wetherbeei_contig14602.1.1 vs. uniprot
Match: A0A2R5GWD4_9STRA (Dynein heavy chain 2, axonemal n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWD4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.520e-16
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    7 YFLRPEGVQLTARNVGDAMRYGVVSGQM-----VNSLMRLMQGVFGPKVFARQQTWPESVKNELTSHFHRFMASLVETSNQARGKTVLYLP 264
            YF+RPEG  LT  N+   ++YG VSG       + SL+R M  VF  + F    +WPESV+ +     H+F+ASL ET+NQ++GKT+LY+P
Sbjct:  200 YFVRPEGKPLTVHNMRRLIKYGRVSGHAHGLNAMGSLLRAMNTVFAGQ-FRDNASWPESVRKDFAGQLHKFVASLTETTNQSKGKTILYIP 289          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14602.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX3_ECTSI9.870e-3167.44Axonemal 1-beta dynein heavy chain dynein heavy ch... [more]
A0A6P5ALE7_BRABE1.220e-1840.63dynein heavy chain 2, axonemal-like n=1 Tax=Branch... [more]
UPI001CFC46642.660e-1843.18dynein axonemal heavy chain 2 n=1 Tax=Protopterus ... [more]
UPI000C9E5C3C3.620e-1843.18dynein heavy chain 2, axonemal isoform X3 n=1 Tax=... [more]
A0A8C8SM12_9SAUR2.350e-1742.05Dynein axonemal heavy chain 2 n=1 Tax=Pelusios cas... [more]
A0A8B6HBF9_MYTGA4.340e-1741.57Dynein heavy chain, axonemal (Fragment) n=1 Tax=My... [more]
A0A4D9DKB5_9SAUR4.670e-1740.91Long-chain fatty acid--CoA ligase n=1 Tax=Platyste... [more]
A0A4X2K5X6_VOMUR5.980e-1738.64Dynein axonemal heavy chain 2 n=1 Tax=Vombatus urs... [more]
A0A8J1UFG9_OWEFU1.100e-1641.57Ofus.G12423 protein (Fragment) n=1 Tax=Owenia fusi... [more]
A0A2R5GWD4_9STRA1.520e-1645.05Dynein heavy chain 2, axonemal n=1 Tax=Hondaea fer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14602contigP-wetherbeei_contig14602:5..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWX3
Preferred nameDNAH2
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size264
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008017,GO:0008092,GO:0008150,GO:0008569,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0031514,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0040011,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045505,GO:0048870,GO:0051179,GO:0051674,GO:0051959,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494,GO:1990939
Exons2
Evalue1.62e-31
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size264
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186027.469588-CDS-P-wetherbeei_contig14602:4..1341683186027.469588-CDS-P-wetherbeei_contig14602:4..134Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14602 5..134 -
1683186027.4806461-CDS-P-wetherbeei_contig14602:420..5541683186027.4806461-CDS-P-wetherbeei_contig14602:420..554Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14602 421..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14602.1.1prot_P-wetherbeei_contig14602.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14602 5..554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14602.1.1

>prot_P-wetherbeei_contig14602.1.1 ID=prot_P-wetherbeei_contig14602.1.1|Name=mRNA_P-wetherbeei_contig14602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
VAYFLRPEGVQLTARNVGDAMRYGVVSGQMVNSLMRLMQGVFGPKVFARQ
QTWPESVKNELTSHFHRFMASLVETSNQARGKTVLYLP
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mRNA from alignment at P-wetherbeei_contig14602:5..554-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14602.1.1 ID=mRNA_P-wetherbeei_contig14602.1.1|Name=mRNA_P-wetherbeei_contig14602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=550bp|location=Sequence derived from alignment at P-wetherbeei_contig14602:5..554- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCCTATTTCCTGCGGCCGGAGGGCGTCCAGCTGACGGCCCGCAACGT CGGCGACGCGATGCGGTACGGCGTCGTCAGCGGACAGATGGTGAACAGCC TCATGCGCCTCATGCAGGGTGTCTTCGGCCCCAAGTGAGTCTAGTGGCTT CCTTTTGCCTTTTGTTTTGGTACGGCTCCGGGCGGAATGCGGCTGATTTT CCGGGTTGCCGTTCGTTGCCCTTCGTTGTCCCAAGTTTTCTCCTGCTTTC GCTACCATGCCTCCATGTTTTTCATGCCAGGACCCCTCAATTGCGGACGA GATTCAGTGAACAGCGAACTCAACTATTTTTTTCAGCGGCGAGGAAGCGT AAGGGCATCGAAAGAAATTCACTCTGAATTTAATCTCTCTCCTCCCACCC TTTCAACTCCCTTGCGGCAGGGTGTTTGCGCGGCAGCAGACGTGGCCGGA GAGCGTGAAAAACGAGCTGACGTCACATTTCCACCGCTTCATGGCGTCGT TGGTCGAGACGTCCAACCAGGCGCGCGGCAAGACGGTGCTCTACCTGCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14602:5..554-

>mRNA_P-wetherbeei_contig14602.1.1 ID=mRNA_P-wetherbeei_contig14602.1.1|Name=mRNA_P-wetherbeei_contig14602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig14602:5..554- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCCTATTTCCTGCGGCCGGAGGGCGTCCAGCTGACGGCCCGCAACGT
CGGCGACGCGATGCGGTACGGCGTCGTCAGCGGACAGATGGTGAACAGCC
TCATGCGCCTCATGCAGGGTGTCTTCGGCCCCAAGGTGTTTGCGCGGCAG
CAGACGTGGCCGGAGAGCGTGAAAAACGAGCTGACGTCACATTTCCACCG
CTTCATGGCGTCGTTGGTCGAGACGTCCAACCAGGCGCGCGGCAAGACGG
TGCTCTACCTGCCA
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