mRNA_P-wetherbeei_contig10025.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10025.1.1
Unique NamemRNA_P-wetherbeei_contig10025.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10025.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10025contigP-wetherbeei_contig10025:856..1884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size411
Hectar predicted targeting categoryother localisation
Exons4
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185850.535728-CDS-P-wetherbeei_contig10025:855..8861683185850.535728-CDS-P-wetherbeei_contig10025:855..886Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10025 856..886 -
1683185850.543296-CDS-P-wetherbeei_contig10025:1041..11361683185850.543296-CDS-P-wetherbeei_contig10025:1041..1136Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10025 1042..1136 -
1683185850.550603-CDS-P-wetherbeei_contig10025:1371..14791683185850.550603-CDS-P-wetherbeei_contig10025:1371..1479Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10025 1372..1479 -
1683185850.5577948-CDS-P-wetherbeei_contig10025:1707..18841683185850.5577948-CDS-P-wetherbeei_contig10025:1707..1884Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10025 1708..1884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10025.1.1prot_P-wetherbeei_contig10025.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10025 856..1884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10025.1.1

>prot_P-wetherbeei_contig10025.1.1 ID=prot_P-wetherbeei_contig10025.1.1|Name=mRNA_P-wetherbeei_contig10025.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MGQANRELNAVNCSASSNCTALGREECSETTGVNLCGRCLDGFFGVNAPA
NTACLEEAAVCGSGYNCTEALDCEFGACVGGICGSAVKTCDNDCGGRGNC
TYIDASGTYMAATDCTIDRLLCYAVCSCNDGFNGSAC
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mRNA from alignment at P-wetherbeei_contig10025:856..1884-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10025.1.1 ID=mRNA_P-wetherbeei_contig10025.1.1|Name=mRNA_P-wetherbeei_contig10025.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1029bp|location=Sequence derived from alignment at P-wetherbeei_contig10025:856..1884- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCAAGCCAACCGCGAGCTGAATGCCGTCAACTGCAGCGCCTCTTC
CAACTGCACCGCCCTTGGCCGCGAAGAGTGCTCCGAAACGACGGGGGTCA
ATCTGTGCGGGCGGTGCCTGGATGGTTTCTTCGGGGTCAACGCGCCTGCG
AACACGGCCTGCCTCGAGGAGGCGGCGGTTCCAACGAGTTGCGCTGACGG
TTACTTCAATGGCAACGAAACGGACGTGGACTGTGGGGGCGGCATGTGCG
GGGTGAGTCACTTTGCCATCTGGGTTCTCACTTGGCTTCTTGATCTTTTA
TTCCTTTCACTGCATGCCAGGACTGCTCTCTTTTTCCTCGCATTCTAGGT
GACTCGAAATAGCGAAATTGCCTCTCAATTGTCCCTCTTTCCGACCAAAC
ATCAGGTCTGTGGAAGCGGCTACAATTGCACCGAGGCGCTGGATTGCGAG
TTTGGCGCCTGCGTAGGTGGAATCTGCGGCTCCGCCGTGAAGACGTGCGA
CAACGATTGCGGGGTAAGAAGCAGGATGAGCGGGACATGACATAACGTCG
TGCTCCGCTGTCCTTTATTCCTGCCGAAAGCCCGTACATTCGTAGTTCGG
TATTCCGGCTGTCTCACGTGCCTTTGTGGCAGGGCTTGCTACGCATGTTC
TCGATTTCGACCATCTTTTACTTTTAGATGCATACGCCCGTATCGGCCGA
CGAGTCACCGCAGCGGTCGCAATCCCGCAATCTCGGTTGCTCTCGCAGGG
CCGCGGCAATTGCACGTACATCGATGCGAGCGGCACATATATGGCCGCGA
CCGACTGCACCATCGACCGACTCCTCTGCTACGCCGTGTGCAGGTACGGG
TAACCAGCGAATGCATCTTCTTTGAAAGAGATGACGTTCCGAACGCGGCA
TTTCCAGGCAGGCATATTGAAGAAAGCTCACTTTCGATTCGGCGGCGCTT
CAATCCTCGCTTCTTCTCTTTTTCCTCCTCCCTCTCTCTGCCCGCCAGCT
GCAACGACGGTTTCAACGGCAGTGCCTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10025:856..1884-

>mRNA_P-wetherbeei_contig10025.1.1 ID=mRNA_P-wetherbeei_contig10025.1.1|Name=mRNA_P-wetherbeei_contig10025.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig10025:856..1884- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCAAGCCAACCGCGAGCTGAATGCCGTCAACTGCAGCGCCTCTTC
CAACTGCACCGCCCTTGGCCGCGAAGAGTGCTCCGAAACGACGGGGGTCA
ATCTGTGCGGGCGGTGCCTGGATGGTTTCTTCGGGGTCAACGCGCCTGCG
AACACGGCCTGCCTCGAGGAGGCGGCGGTCTGTGGAAGCGGCTACAATTG
CACCGAGGCGCTGGATTGCGAGTTTGGCGCCTGCGTAGGTGGAATCTGCG
GCTCCGCCGTGAAGACGTGCGACAACGATTGCGGGGGCCGCGGCAATTGC
ACGTACATCGATGCGAGCGGCACATATATGGCCGCGACCGACTGCACCAT
CGACCGACTCCTCTGCTACGCCGTGTGCAGCTGCAACGACGGTTTCAACG
GCAGTGCCTGC
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