mRNA_P-wetherbeei_contig1445.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1445.3.1
Unique NamemRNA_P-wetherbeei_contig1445.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1445.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1445contigP-wetherbeei_contig1445:6242..7184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size617
Hectar predicted targeting categoryother localisation
Exons2
Cds size585
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186022.2012262-UTR-P-wetherbeei_contig1445:6241..62721683186022.2012262-UTR-P-wetherbeei_contig1445:6241..6272Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1445 6242..6272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186022.2093356-CDS-P-wetherbeei_contig1445:6272..68201683186022.2093356-CDS-P-wetherbeei_contig1445:6272..6820Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1445 6273..6820 -
1683186022.2175033-CDS-P-wetherbeei_contig1445:7147..71841683186022.2175033-CDS-P-wetherbeei_contig1445:7147..7184Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1445 7148..7184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1445.3.1prot_P-wetherbeei_contig1445.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1445 6273..7184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1445.3.1

>prot_P-wetherbeei_contig1445.3.1 ID=prot_P-wetherbeei_contig1445.3.1|Name=mRNA_P-wetherbeei_contig1445.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp
GFGCDGGLFCVPPRRVPSRPRESYELLRSRLIGSGRQLIFRGAGKAARPG
YTQSGSEHSVISRPCCAAELRGGKEGTSKQRQESRNSRNIGRGRPGNCRQ
QRRQLRWCVGRVVTPKVRKTKAKRAKTTPAAAVTAATTTTMERASRPKLR
RRNVQELQTVVAATTIIVRADRPKPCRKKVQTLNTKWDVLMDNK*
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mRNA from alignment at P-wetherbeei_contig1445:6242..7184-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1445.3.1 ID=mRNA_P-wetherbeei_contig1445.3.1|Name=mRNA_P-wetherbeei_contig1445.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=943bp|location=Sequence derived from alignment at P-wetherbeei_contig1445:6242..7184- (Phaeothamnion wetherbeei SAG_119_79)
GGCTTCGGCTGCGATGGCGGCCTCTTCTGCGTTCCTCGTGAGAGCACCAA
TGCTTCCGTTTATGGGAGCACATTCCCCCCCAAAGAGGAAACGAAAAGAG
AGCATGCAAAGAGCTTCCGTACTCGTCGTTAGCGCACGGCAGCACGCGGA
GGTCGTTGCGTGACTGAACTGTCGTTTTCGTGTCTGGCGACATCAAACCT
TGTCCACTTTGCTATCGTCTTTTGCCTCCTCCTTGTACAAATATTAGTTC
ATGTGAGTGCGATCGTTGTAAACGACCTCAAATTCTGCAATCTACGGAAC
CTGATGAAGACTGAGTTATTTGGGAAACATTTTCTTCGTCTCCCTGGTTC
TATAAAACATACAGCTCGAAGGGTTCCTTCGAGACCGCGTGAAAGCTACG
AGTTGTTGAGAAGTCGTCTGATCGGCTCCGGACGACAATTGATTTTTCGC
GGCGCAGGCAAAGCTGCCCGACCTGGTTACACGCAATCTGGTTCGGAGCA
CTCTGTTATCTCGAGGCCGTGCTGTGCAGCAGAGCTCAGAGGCGGCAAAG
AGGGAACTTCCAAGCAACGACAAGAAAGCCGTAACAGCCGAAACATCGGA
AGAGGAAGACCCGGAAACTGCAGGCAACAGCGGCGGCAACTGCGATGGTG
CGTGGGAAGGGTGGTCACGCCGAAAGTTCGGAAGACGAAGGCCAAGAGAG
CAAAGACCACACCGGCGGCAGCGGTGACAGCGGCGACGACTACCACGATG
GAAAGGGCGTCTCGGCCAAAACTTCGGAGGAGGAATGTCCAGGAACTGCA
GACTGTCGTGGCGGCGACGACGATTATTGTAAGAGCGGATCGGCCGAAAC
CTTGTAGAAAGAAGGTCCAAACACTGAATACTAAGTGGGATGTTTTAATG
GATAACAAGTAAACGCTCTTCGTGGCGACTCACGTCGACCCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1445:6242..7184-

>mRNA_P-wetherbeei_contig1445.3.1 ID=mRNA_P-wetherbeei_contig1445.3.1|Name=mRNA_P-wetherbeei_contig1445.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig1445:6242..7184- (Phaeothamnion wetherbeei SAG_119_79)
GGCTTCGGCTGCGATGGCGGCCTCTTCTGCGTTCCTCCTCGAAGGGTTCC
TTCGAGACCGCGTGAAAGCTACGAGTTGTTGAGAAGTCGTCTGATCGGCT
CCGGACGACAATTGATTTTTCGCGGCGCAGGCAAAGCTGCCCGACCTGGT
TACACGCAATCTGGTTCGGAGCACTCTGTTATCTCGAGGCCGTGCTGTGC
AGCAGAGCTCAGAGGCGGCAAAGAGGGAACTTCCAAGCAACGACAAGAAA
GCCGTAACAGCCGAAACATCGGAAGAGGAAGACCCGGAAACTGCAGGCAA
CAGCGGCGGCAACTGCGATGGTGCGTGGGAAGGGTGGTCACGCCGAAAGT
TCGGAAGACGAAGGCCAAGAGAGCAAAGACCACACCGGCGGCAGCGGTGA
CAGCGGCGACGACTACCACGATGGAAAGGGCGTCTCGGCCAAAACTTCGG
AGGAGGAATGTCCAGGAACTGCAGACTGTCGTGGCGGCGACGACGATTAT
TGTAAGAGCGGATCGGCCGAAACCTTGTAGAAAGAAGGTCCAAACACTGA
ATACTAAGTGGGATGTTTTAATGGATAACAAGTAA
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