mRNA_P-wetherbeei_contig1438.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1438.3.2
Unique NamemRNA_P-wetherbeei_contig1438.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1438.3.2 vs. uniprot
Match: D8LEH1_ECTSI (SH3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH1_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 5.910e-60
Identity = 196/550 (35.64%), Postives = 272/550 (49.45%), Query Frame = 2 
Query:  149 KMQPQGLQPNKIQKLQIQARNIVKHKQVVKFE-EVDGDDDQNYTAASERFIELQTQLNFILQHAQSFRQKMEEAVDVAILLADDFGRMS--QAADRVNEGWAATAHGQAYNHKHMLEECLEAVKQHLGTELDDKSLSTLQAEAERFANVKLQMKERYLKKVEVQHYSTKLQDLKEKIETQLASKPKVTEEKFERNKEKYATATQHLRDQTNQLMSTYAHAETLRRRILTEDLPAMVQLQKAVFDACAANVGRAAHGLPEFSPTPIGARLAASHRGFATGDSSAGGYGAPALSERMAEVSLDDSGSPPRPPSSAYNSRAGSSKMEA-----------------------------SPLRDHSYGGGGITA---KKTPPSHAGGDERRGSSGSGASPSLAGEATGGYSDRQSGRSLGCSEAAAAGXXXXXX-SSVGTASVSPDR-----LGAINGATNGGDGNSXXXXVAALTPVSSPGXXXXXVSVAAMPPLPPGQIYLRAVFDYDATQEGDLSFKMNDLIAVDENEYIGDGWVSGRLGDNSGMFPANYCE 1675
            K  P+ + PNK+        +  KHK +  F+ ++D D+DQNY +ASERF+E QTQL  +L H Q FR+ +EE++  A+ LADDFGR++      R  E WA  A GQA+  K MLEE   +++QHL  EL++K + +L+ E   F+ V  QM ER   K+E+ HYS K+Q+LK           K T+EK +RNKEKYA A+Q LRDQTNQLMS +AHAE LR+R+LT+D P+++  +K  FDA A N+ +AA    +  P P   R++ + R       S    GAP           +D G        A+  +  +SKM A                             +P   +S   G   A   +K  PS A               +LA  A  G  D  +        AAAA        +  G  + SPD        A+       + ++     A   P     XXXXX        L PG++ +RA++DY+ATQEGDLSF + D+I  D   + GDGWVSG    N+G+FPANY E
Sbjct:    9 KPPPRVVAPNKLW-------HAFKHKNLDVFKFDLDADEDQNYVSASERFLEFQTQLGMVLHHTQLFRKTLEESLQHAVELADDFGRVAAGNGGGRTMEPWAQKAGGQAFFLKGMLEESAVSLRQHLCDELEEKVVRSLREEVANFSTVHTQMLERSNMKMEMLHYSNKVQELK--------GSQKATDEKKDRNKEKYAQASQALRDQTNQLMSIFAHAEQLRQRLLTQDFPSVITAEKNAFDAFAINLNKAAAETSDGEPRPP--RMSDAARAPQRTPMSPKDGGAPWSGS-------NDGGEFGEELKRAHEHQ--NSKMAAESAXXXXXXXXXXXXXXXXXXXXXXXXADTPAMTNSSTSGADAADDAEKHDPSEA--------------AALAAPAPAGEKDATAPTESPKPPAAAATVDDEAAVAGSGPKTDSPDDEAEALTAAVPAMATAPEASAPGEEQAEEVPGXXXXXXXXXXXXXXXXXLEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTE 518
[Close]
BLAST of mRNA_P-wetherbeei_contig1438.3.2 vs. uniprot
Match: A0A836CJ66_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ66_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.060e-38
Identity = 159/498 (31.93%), Postives = 240/498 (48.19%), Query Frame = 2 
Query:  248 VDGDDDQNYTAASERFIELQTQLNFILQHAQSFRQKMEEAVDVAILLADDFGRMSQAADRVNEGWAATAHGQAYNHKHMLEECLEAVKQHLGTELDDKSLSTLQAEAERFANVKLQMKERYLKKVEVQHYSTKLQDLKEKIETQLASKPKVTEEKFERNKEKYATATQHLRDQTNQLMSTYAHAETLRRRILTEDLPAMVQLQKAVFDACAANVGRAAHGLPEFSPTPIGARLAASHRGFATGDSSA-GGY-----GAPALSERMAEVSLDDSGSPPRPPSSAYNSRAGSSKMEASPLRDHSYGGGGITAKK-------TPPSHAGGDERRGSSGSGASPSLAGEATGGYSDRQSGRSLGCSEAAAAGXXXXXXSSVGTASVSPDRLGA--INGATNGGDGNSXXXXVAALTPVSSPGXXXXXVSVAAMPP------LPPGQIYLRAVFDYDATQEGDLSFKMNDLIAVDENEYIGDGWVSGRLGDNSGMFPANYCEK 1678
            VD + D++Y AA ERF+  + QL  I+Q+ + FR +++E++ VA  L+ +F ++SQ      EG +  A          L+E L         +LD   LS L+ + E + ++   +KERY  KVE+QHYS K+Q+L +         PKV  E+  RN+EKYATA   LR+QT+ L+  +A +E  RRR+L EDLP ++ L++  + A A N  +AA GL   +P   G+R ++S  G      SA G Y     G  A S RM++V L                  G+S    S   DH      +TAK        +PPSH     +R      AS S+     GG +    G+S     AAAA         V T +     +GA  +  +       S       +T  ++P       + +   P      L PG + +RA++D++A +EGDL+FK ND+I  D + +  DGWV+G     +G FP+NY E+
Sbjct:  333 VDTESDRDYKAAEERFLVFRAQLLEIIQNTEQFRSRLKESIAVASKLSQNFLKVSQG-----EGDSGVA----------LDELLFV-------DLDKYVLSDLKIQHESYNDINKLVKERYELKVELQHYSDKVQELNDN--------PKVAAERKVRNEEKYATANTRLREQTDALLRRFAESEVRRRRVLEEDLPRIMDLKRLAYAALATNAEKAAQGLV-LAPMRSGSRGSSSAFGSKDLPGSARGSYDNTVTGQGAESARMSDVPL-----------------GGTSSQRTSVNTDHGASSHALTAKPAAAALLDSPPSHL---YKR------ASGSMESVQPGGNAGGVVGQSSHSGSAAAAASEDV----VSTRTALEQNMGATAVPVSQEVFHEASYEQEQEPVTAAATPEANAADANASRTEPEVVDGGLGPGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTER 769
[Close]
BLAST of mRNA_P-wetherbeei_contig1438.3.2 vs. uniprot
Match: A0A835Z3B5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3B5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 9.270e-28
Identity = 81/199 (40.70%), Postives = 117/199 (58.79%), Query Frame = 2 
Query:  323 ILQHAQSFRQKMEEAVDVAILLADDFGRMSQA---ADRVNEGWAATAHGQAYNHKHMLEECLEAVKQHLGTELDDKSLSTLQAEAERFANVKLQMKERYLKKVEVQHYSTKLQDLKEKIETQLASKPKVTEEKFERNKEKYATATQHLRDQTNQLMSTYAHAETLRRRILTEDLPAMVQLQKAVFDACAANVGRAAHGL 910
            ++ +A+ FR K++E+  +A  LA +F RMSQ         E W  TA  Q+   K    +    V+Q L  ++D   LS L+A+ E ++++   +KERY  KVE+QHYS K+Q+L           PK TEEK  RN EKYATA   LR+QT+ LM  +A AE  RRR+L EDLP ++ L ++ ++A AAN  +AA G+
Sbjct:    1 MITNAEHFRAKLKESAGLASKLAHNFMRMSQGDVGEGEPEEAWMTTAKRQSEVLKTTTADSALVVEQVLYIDMDQFLLSDLKAQLESYSDINKLVKERYELKVELQHYSDKVQELN--------FNPKATEEKKVRNAEKYATANNKLREQTDALMRRFAEAELRRRRVLEEDLPRLMDLHRSTYEAMAANALKAAQGI 191
[Close]
BLAST of mRNA_P-wetherbeei_contig1438.3.2 vs. uniprot
Match: A0A835Z502_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z502_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.000e-10
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 2 
Query: 1496 LPPGQIYLRAVFDYDATQEGDLSFKMNDLIAVDENEYIGDGWVSGRLGDNSGMFPANYCEK 1678
            LPPG I +RA+FD++A Q GDL+FK  D+I  +  ++  DGWV+G     +G FP+NY E+
Sbjct:   81 LPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTER 141
[Close]
BLAST of mRNA_P-wetherbeei_contig1438.3.2 vs. uniprot
Match: A0A7S3XPH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPH4_HETAK)

HSP 1 Score: 66.6 bits (161), Expect = 2.310e-9
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 2 
Query: 1490 PPLPPGQIYLRAVFDYDATQEGDLSFKMNDLIAVDENEYIGDGWVSGRLGD-NSGMFPANYCE 1675
            P +PPG+I L+AVF+Y A Q+GDLSF + D I V++  Y  + W+ G   D +SG+FP NY E
Sbjct:   84 PVIPPGKIRLKAVFEYVAQQDGDLSFDVGDAIFVEDQVYEENAWIEGSKPDGSSGVFPTNYTE 146
[Close]
BLAST of mRNA_P-wetherbeei_contig1438.3.2 vs. uniprot
Match: A0A7S2AIV7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AIV7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.170e-7
Identity = 31/73 (42.47%), Postives = 40/73 (54.79%), Query Frame = 2 
Query: 1472 VSVAAMPPLPPGQIYLRAVFDYDATQEGDLSFKMNDLIAVDENEYI---GDGWVSG-RLGDNSGMFPANYCEK 1678
            V     P L PG +Y+RA F++   +EGDL F   D+   +E EY    G GWV G  L    G+FPANY E+
Sbjct:  507 VQAVQRPQLRPGMVYVRATFEFQGVEEGDLPFGEGDIFQANEQEYNEQDGSGWVGGINLQGKEGIFPANYVER 579
[Close]
BLAST of mRNA_P-wetherbeei_contig1438.3.2 vs. uniprot
Match: A0A0C3MKL3_9AGAM (SH3 domain-containing protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3MKL3_9AGAM)

HSP 1 Score: 60.5 bits (145), Expect = 1.000e-6
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 2 
Query: 1493 PLPPGQIYLRAVFDYDATQEGDLSFKMNDLIAVDENEYIGDGWVSGRLG---DNSGMFPANYCEKA 1681
            P PPG +   A+FDY AT+ GDLSF+  D+I V E     + W +GRL      +G+FPAN+ E A
Sbjct:  147 PAPPGAVKAIAMFDYAATEAGDLSFREGDVIYVTEKTESSNDWWTGRLAAQPSQTGIFPANFVELA 212
[Close]
BLAST of mRNA_P-wetherbeei_contig1438.3.2 vs. uniprot
Match: A0A0L0DF28_THETB (Cortactin isoform F n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DF28_THETB)

HSP 1 Score: 58.5 bits (140), Expect = 2.820e-6
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 2 
Query: 1523 AVFDYDATQEGDLSFKMNDLIAVDENEYIGDGWVSGRLGDNSGMFPANYCEK 1678
            AV+DY+AT + +LSF   D+I V   E I DGW SG L  N G+FPANY E+
Sbjct:  135 AVYDYEATDDTELSFNEGDVITV--LEKIDDGWWSGELNGNVGVFPANYVEQ 184
[Close]
BLAST of mRNA_P-wetherbeei_contig1438.3.2 vs. uniprot
Match: F0ZZB7_DICPU (SH3 domain-containing protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZZB7_DICPU)

HSP 1 Score: 60.8 bits (146), Expect = 3.410e-6
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 2 
Query: 1511 IYLRAVFDYDATQEGDLSFKMNDLIAVDENEYIGDGWVSGRLGDNSGMFPANYCE 1675
            I++RA++DYDA Q+ ++SFK ND+I + ++   GDGW  G L  ++G  PANY E
Sbjct:   28 IWVRALYDYDAAQDSEISFKENDVICITQD--YGDGWWEGDLNGSAGRVPANYFE 80
[Close]
BLAST of mRNA_P-wetherbeei_contig1438.3.2 vs. uniprot
Match: A0A197JG46_9FUNG (BAR-domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JG46_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 9.270e-6
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 2 
Query: 1478 VAAMPPLPPG----QIYLRAVFDYDATQEGDLSFKMNDLIAVDENEYIGDGWVSGRLGDN-----SGMFPANYCEK 1678
            +A  PP+PP     Q  +RA++++DAT EG+LS +  D++ + E   I +GW  G L D+     +GMFP+NYCE+
Sbjct:  340 MAPPPPVPPSRGRTQKQVRALYNFDATAEGELSLQKGDIVRIVEE--IDEGWWEGELVDSHGVRHAGMFPSNYCEE 413
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1438.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEH1_ECTSI5.910e-6035.64SH3 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CJ66_9STRA1.060e-3831.93SH3 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z3B5_9STRA9.270e-2840.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z502_9STRA3.000e-1047.54SH3 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3XPH4_HETAK2.310e-949.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2AIV7_9STRA7.170e-742.47Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0C3MKL3_9AGAM1.000e-645.45SH3 domain-containing protein n=1 Tax=Tulasnella c... [more]
A0A0L0DF28_THETB2.820e-653.85Cortactin isoform F n=1 Tax=Thecamonas trahens ATC... [more]
F0ZZB7_DICPU3.410e-647.27SH3 domain-containing protein (Fragment) n=1 Tax=D... [more]
A0A197JG46_9FUNG9.270e-640.79BAR-domain-containing protein n=1 Tax=Linnemannia ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1438contigP-wetherbeei_contig1438:3908..7190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEH1
PFAMsBAR,RasGEF,RasGEF_N,RhoGEF,SH3_1,SH3_9
Model size1768
Max annot lvl2759|Eukaryota
KEGG koko:K11247,ko:K11650,ko:K20047
KEGG Pathwayko04144,ko04714,ko05225,map04144,map04714,map05225
Hectar predicted targeting categoryother localisation
Exons6
Evalue8.65e-61
EggNOG OGsKOG2199@1|root,KOG2199@2759|Eukaryota
Ec32 ortholog descriptionSH3 domain
Ec32 orthologEc-21_004710.1
Descriptionintracellular protein transport
Cds size1533
COG categoryO
BRITEko00000,ko00001,ko03021,ko03036,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1438.3.2prot_P-wetherbeei_contig1438.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1438 4059..7106 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.9593048-UTR-P-wetherbeei_contig1438:3907..40581683186019.9593048-UTR-P-wetherbeei_contig1438:3907..4058Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1438 3908..4058 +
1683186020.0216556-UTR-P-wetherbeei_contig1438:7106..71901683186020.0216556-UTR-P-wetherbeei_contig1438:7106..7190Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1438 7107..7190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.970319-CDS-P-wetherbeei_contig1438:4058..42471683186019.970319-CDS-P-wetherbeei_contig1438:4058..4247Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1438 4059..4247 +
1683186019.9776409-CDS-P-wetherbeei_contig1438:4384..45571683186019.9776409-CDS-P-wetherbeei_contig1438:4384..4557Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1438 4385..4557 +
1683186019.9853113-CDS-P-wetherbeei_contig1438:5118..52301683186019.9853113-CDS-P-wetherbeei_contig1438:5118..5230Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1438 5119..5230 +
1683186019.9941196-CDS-P-wetherbeei_contig1438:5515..55871683186019.9941196-CDS-P-wetherbeei_contig1438:5515..5587Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1438 5516..5587 +
1683186020.0027313-CDS-P-wetherbeei_contig1438:5857..61231683186020.0027313-CDS-P-wetherbeei_contig1438:5857..6123Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1438 5858..6123 +
1683186020.011995-CDS-P-wetherbeei_contig1438:6385..71061683186020.011995-CDS-P-wetherbeei_contig1438:6385..7106Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1438 6386..7106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1438.3.2

>prot_P-wetherbeei_contig1438.3.2 ID=prot_P-wetherbeei_contig1438.3.2|Name=mRNA_P-wetherbeei_contig1438.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=511bp
MQPQGLQPNKIQKLQIQARNIVKHKQVVKFEEVDGDDDQNYTAASERFIE
LQTQLNFILQHAQSFRQKMEEAVDVAILLADDFGRMSQAADRVNEGWAAT
AHGQAYNHKHMLEECLEAVKQHLGTELDDKSLSTLQAEAERFANVKLQMK
ERYLKKVEVQHYSTKLQDLKEKIETQLASKPKVTEEKFERNKEKYATATQ
HLRDQTNQLMSTYAHAETLRRRILTEDLPAMVQLQKAVFDACAANVGRAA
HGLPEFSPTPIGARLAASHRGFATGDSSAGGYGAPALSERMAEVSLDDSG
SPPRPPSSAYNSRAGSSKMEASPLRDHSYGGGGITAKKTPPSHAGGDERR
GSSGSGASPSLAGEATGGYSDRQSGRSLGCSEAAAAGAATGGASSVGTAS
VSPDRLGAINGATNGGDGNSSTAAVAALTPVSSPGGGGGGVSVAAMPPLP
PGQIYLRAVFDYDATQEGDLSFKMNDLIAVDENEYIGDGWVSGRLGDNSG
MFPANYCEKA*
back to top

mRNA from alignment at P-wetherbeei_contig1438:3908..7190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1438.3.2 ID=mRNA_P-wetherbeei_contig1438.3.2|Name=mRNA_P-wetherbeei_contig1438.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3283bp|location=Sequence derived from alignment at P-wetherbeei_contig1438:3908..7190+ (Phaeothamnion wetherbeei SAG_119_79)
TTAGAGGGAAAAGCAGCTTCTTGAGACGCTGATTCGACAGCTGCCCGTGG
CTGTGTTCACTGTCGAACGGTGTGCAGCGGAAGGCGGCAGGAAACCGAGC
GTAGGCGGCGGGACTTGGGCCAGGCTCTGGGAGCCTGGTGCACCAGGGAA
GATGCAACCACAGGGCTTGCAGCCGAACAAGATTCAAAAGCTCCAAATTC
AAGCTCGCAACATCGTCAAGCACAAGCAGGTTGTAAAGTTTGAGGAGGTG
GACGGCGATGACGACCAAAATTACACAGCGGCATCGGAACGGTTCATCGA
GCTCCAGACGCAGCTCAACTTCATCCTGCAGCATGCCCAGGTGACCGGCG
CCCCGTCCGAATGATCGCTGGCATTGTGCACGAAAGTCTTCGCGCTAGCG
CTGTAACTTGGTTTTATTTATTTTTGCTTCTACATTCTGTCGATGCGTTC
GCCTTCCTCCACGGCCCGGTCCGACAGTCCTTCCGACAGAAAATGGAGGA
GGCGGTCGACGTGGCAATACTGCTGGCCGACGACTTCGGCCGGATGTCCC
AGGCGGCGGACCGTGTGAATGAGGGGTGGGCTGCCACTGCCCACGGGCAG
GCCTACAACCACAAGCACATGCTGGAGGAGTGCCTCGAGGCCGTCAAGCA
GTGAGTCCGCATCCCCTTGTTTTCCTTTCCCATATTTCGTTTTCTTGTGT
GATTTGGGGTCCAGAAGGCTCGGGCACTGCTTTCAAAAATGTTGCTGCAG
TAATCTAAGGGCTTTCCAGAGTGTTCCTCGTGGCACGAAATCGAACCACC
GCGTCGATGAAAGGATAACATGGACGAAATGCAAGTTTTTCGTGAAATTC
CTTGTTCGTCTTCCTGCAACTTTCTTTGTGGAGCACAAATTTGCTTCCAA
GCTAGGGCGCTTTTTTCAATATTTGCTCAATACGTTTGCATTGCGCCCGC
TTGGAGAGAGGTGTGCTGGACCATATTTGCACCAGGTTACTGGGGGAGTT
TGCACGCAGTATCCCCCTATTTTGAGCAACTTCTCTTGCCTGATTGGATG
TAAGCTCTGCCTAGACTGGATGTGCTGTTGGTGGCCGCATTAAACCTTCT
CAGCCTGTCGTCTGAGGCTGCTGACCGCCGCTCATTGACCTGCAAACTTT
GCTGCCTCCGCGATGTCGGCAATCGATTGGCCCGGGTGGCCTTGACTTTG
GTGCTGCGCAGGCATCTGGGGACGGAGCTGGACGACAAGTCACTGAGCAC
GCTGCAGGCGGAAGCGGAGCGGTTCGCAAACGTCAAGCTGCAGATGAAGG
AGCGCTACCTCAAGAAAGTGGAGGTACAATTATTTTACCTCCTTCTCAAT
ACGGAAAAAATGTCATAGTTCTGAGAGTGCGTGTTTGCGACGGCATCAGT
TTTCTGTTAGATTTAATCGAGCGGAGACCGGTAGCCTCAACAGCTCCTGC
ACTTTCTTCACATGCTGCGTTTTGGAATTCAAATGATGGATCAGGCCCTT
TCTCTAGGACTGTTGACGTGACCAGCCTTGAAACTTCCACGCATGTATTT
ATTGCTGCTCCCTTTCTTCTTTGGGCCCATCCGGTTGGTCTGCGGCGGTC
CGTGGCAGGTGCAACACTACAGCACCAAGCTGCAAGACCTGAAGGAGAAG
ATTGAGACGCAGCTAGCAAGCAAGCCCAAGGTGAGCCGCAACTAGGGGAA
AGACTCCTGCCGCTTTCCCATTTCGAAAAAATGCTTGATGCCGGGTCCAA
TAATATGGGCTGCGGATTGCGGGTCTGGCGGCATTGGCTTCTCCTCCCCT
TCTCCGATCGCTGCAGCCCCTTTTCCTGCCGCGGCTCCCACAACTGCCAC
TTTTGCTGCCAAATTGTCCGCCGACCGCTCGCCGTCCGCCCATCGCCCAC
CGCCCGCTGTGTGTCGTGCCTCCGTACCGCGTGCCACCACATGTACATAG
GTGACGGAGGAGAAGTTCGAGCGCAACAAGGAGAAGTACGCGACGGCGAC
GCAGCACCTGCGGGACCAAACGAACCAACTCATGTCGACGTACGCCCACG
CCGAGACGCTCCGGCGCCGCATCCTGACGGAGGACCTCCCGGCCATGGTG
CAGCTCCAGAAGGCCGTTTTCGACGCCTGCGCCGCCAACGTCGGCCGGGC
GGCGCACGGACTGCCGGAGTTCAGCCCCACGCCCATTGGAGCGCGCCTCG
CCGCCAGCCACCGCGGGTGAGGCTAGCTGGCTACTTACAGGGAGCTTCTA
GTCTTTGGAGGAGAAGAGGGAGGGCGTGGATGGACAAAAGAGACGCAGGA
TTGCTTCCGTTTGCTCGCGCTCCCCTTGCTGTAAATTCTGCTGTTGTGAT
TGGTCGTAGACTATGCAGACCATTATTTTTGCCTTCCGAACAGCACGTCG
TGCTTTCCCTCCTTCTGGCCAACTGACATTCTTGCCGCTCGCTCTTCTTC
TACCTACTTATCTCCCGGCCCTTTACAGGTTTGCGACGGGGGATAGCTCC
GCAGGTGGCTATGGAGCCCCTGCGCTCTCAGAGCGGATGGCCGAAGTGTC
GCTCGACGACAGCGGCTCGCCGCCGCGGCCGCCGTCCTCTGCCTACAACT
CGCGCGCCGGCTCCAGCAAGATGGAGGCGTCGCCGCTGCGGGATCATTCG
TACGGCGGCGGTGGCATCACCGCCAAGAAGACGCCGCCGTCGCACGCCGG
AGGGGACGAACGGAGGGGTTCCTCCGGCAGCGGCGCGAGCCCGTCGCTGG
CGGGAGAAGCGACTGGCGGTTACAGTGACAGGCAGAGCGGGCGCAGCCTC
GGCTGCAGCGAGGCGGCGGCCGCGGGCGCGGCGACGGGCGGCGCCTCGTC
GGTCGGGACGGCGTCCGTCTCGCCGGACCGCCTGGGCGCCATCAACGGAG
CGACGAACGGCGGCGACGGCAACAGCAGCACTGCGGCGGTGGCGGCCTTG
ACGCCGGTCTCGTCCCCCGGCGGCGGCGGCGGCGGCGTCAGCGTGGCGGC
GATGCCGCCGCTGCCGCCGGGGCAGATCTACCTGCGGGCGGTGTTCGACT
ACGACGCGACGCAGGAGGGCGACCTCAGCTTCAAAATGAACGACCTCATC
GCCGTTGACGAGAACGAGTACATCGGGGACGGCTGGGTCTCGGGCCGTCT
CGGCGACAACTCGGGCATGTTCCCGGCCAACTACTGCGAGAAGGCGTGAT
GATTTGAATGTCAAGGAGAGGGAGGGCGGCGGCGGCGGCGGCGCAGGGCG
GGGGATGTGATATCGGGCGCCGGGGGGAGATGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1438:3908..7190+

>mRNA_P-wetherbeei_contig1438.3.2 ID=mRNA_P-wetherbeei_contig1438.3.2|Name=mRNA_P-wetherbeei_contig1438.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1533bp|location=Sequence derived from alignment at P-wetherbeei_contig1438:3908..7190+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACCACAGGGCTTGCAGCCGAACAAGATTCAAAAGCTCCAAATTCA
AGCTCGCAACATCGTCAAGCACAAGCAGGTTGTAAAGTTTGAGGAGGTGG
ACGGCGATGACGACCAAAATTACACAGCGGCATCGGAACGGTTCATCGAG
CTCCAGACGCAGCTCAACTTCATCCTGCAGCATGCCCAGTCCTTCCGACA
GAAAATGGAGGAGGCGGTCGACGTGGCAATACTGCTGGCCGACGACTTCG
GCCGGATGTCCCAGGCGGCGGACCGTGTGAATGAGGGGTGGGCTGCCACT
GCCCACGGGCAGGCCTACAACCACAAGCACATGCTGGAGGAGTGCCTCGA
GGCCGTCAAGCAGCATCTGGGGACGGAGCTGGACGACAAGTCACTGAGCA
CGCTGCAGGCGGAAGCGGAGCGGTTCGCAAACGTCAAGCTGCAGATGAAG
GAGCGCTACCTCAAGAAAGTGGAGGTGCAACACTACAGCACCAAGCTGCA
AGACCTGAAGGAGAAGATTGAGACGCAGCTAGCAAGCAAGCCCAAGGTGA
CGGAGGAGAAGTTCGAGCGCAACAAGGAGAAGTACGCGACGGCGACGCAG
CACCTGCGGGACCAAACGAACCAACTCATGTCGACGTACGCCCACGCCGA
GACGCTCCGGCGCCGCATCCTGACGGAGGACCTCCCGGCCATGGTGCAGC
TCCAGAAGGCCGTTTTCGACGCCTGCGCCGCCAACGTCGGCCGGGCGGCG
CACGGACTGCCGGAGTTCAGCCCCACGCCCATTGGAGCGCGCCTCGCCGC
CAGCCACCGCGGGTTTGCGACGGGGGATAGCTCCGCAGGTGGCTATGGAG
CCCCTGCGCTCTCAGAGCGGATGGCCGAAGTGTCGCTCGACGACAGCGGC
TCGCCGCCGCGGCCGCCGTCCTCTGCCTACAACTCGCGCGCCGGCTCCAG
CAAGATGGAGGCGTCGCCGCTGCGGGATCATTCGTACGGCGGCGGTGGCA
TCACCGCCAAGAAGACGCCGCCGTCGCACGCCGGAGGGGACGAACGGAGG
GGTTCCTCCGGCAGCGGCGCGAGCCCGTCGCTGGCGGGAGAAGCGACTGG
CGGTTACAGTGACAGGCAGAGCGGGCGCAGCCTCGGCTGCAGCGAGGCGG
CGGCCGCGGGCGCGGCGACGGGCGGCGCCTCGTCGGTCGGGACGGCGTCC
GTCTCGCCGGACCGCCTGGGCGCCATCAACGGAGCGACGAACGGCGGCGA
CGGCAACAGCAGCACTGCGGCGGTGGCGGCCTTGACGCCGGTCTCGTCCC
CCGGCGGCGGCGGCGGCGGCGTCAGCGTGGCGGCGATGCCGCCGCTGCCG
CCGGGGCAGATCTACCTGCGGGCGGTGTTCGACTACGACGCGACGCAGGA
GGGCGACCTCAGCTTCAAAATGAACGACCTCATCGCCGTTGACGAGAACG
AGTACATCGGGGACGGCTGGGTCTCGGGCCGTCTCGGCGACAACTCGGGC
ATGTTCCCGGCCAACTACTGCGAGAAGGCGTGA
back to top