mRNA_P-wetherbeei_contig14275.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14275.1.1
Unique NamemRNA_P-wetherbeei_contig14275.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14275.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14275contigP-wetherbeei_contig14275:804..1704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size901
Hectar predicted targeting categorysignal peptide
Exons1
Cds size492
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186015.7994642-UTR-P-wetherbeei_contig14275:803..10221683186015.7994642-UTR-P-wetherbeei_contig14275:803..1022Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14275 804..1022 -
1683186015.8166816-UTR-P-wetherbeei_contig14275:1514..17041683186015.8166816-UTR-P-wetherbeei_contig14275:1514..1704Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14275 1515..1704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186015.8081539-CDS-P-wetherbeei_contig14275:1022..15141683186015.8081539-CDS-P-wetherbeei_contig14275:1022..1514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14275 1023..1514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14275.1.1prot_P-wetherbeei_contig14275.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14275 1023..1514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14275.1.1

>prot_P-wetherbeei_contig14275.1.1 ID=prot_P-wetherbeei_contig14275.1.1|Name=mRNA_P-wetherbeei_contig14275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MAKPFVMACMLQTAALCGPGVRGLQTSLPALYLLRSLSWGLTALPFCPPR
CKFINGGAWRKRGAIFPTYDSAAMARSRSRRRPPASRAYIYCLGCLPRHR
SASSGLAPCPWWGGKLQQGQSGLNRCRSHSPLAGCSSESLFAALESTSSA
ATPPSAANSPSFC*
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mRNA from alignment at P-wetherbeei_contig14275:804..1704-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14275.1.1 ID=mRNA_P-wetherbeei_contig14275.1.1|Name=mRNA_P-wetherbeei_contig14275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=901bp|location=Sequence derived from alignment at P-wetherbeei_contig14275:804..1704- (Phaeothamnion wetherbeei SAG_119_79)
TTTATGTTCTTTAGCTAAGCGCGTTATCAAAAAGACCAGAGAGCCAAGTA
TCTGACGAAGACGGAGCCAGTTCGTTGCCAGCTGCGCTGCGTTGTGGCCC
CCTTTCCATTTTCAAAGCTGTACTCAGGGACGTGTGTAGCAGCTTAGGCC
ACCCACCTGCCTGTAGTTCCCTTGCGGAGTCCTCAAAGGCATGGCGAAAC
CGTTCGTGATGGCATGTATGCTGCAAACGGCGGCGCTATGCGGGCCCGGG
GTACGGGGCCTGCAGACTTCACTCCCAGCGCTCTACTTGCTACGATCGCT
TTCCTGGGGGCTAACTGCACTGCCGTTCTGCCCGCCACGCTGCAAGTTTA
TCAATGGTGGCGCCTGGCGGAAACGAGGCGCAATCTTTCCGACATATGAC
TCCGCCGCCATGGCCCGCAGCCGGAGCAGGCGGAGGCCACCTGCGAGCCG
CGCTTATATTTATTGCCTTGGCTGCCTGCCACGCCACCGATCAGCCTCTT
CGGGACTAGCGCCATGTCCGTGGTGGGGAGGCAAATTGCAGCAAGGTCAA
TCAGGTTTGAATCGCTGCCGGTCTCACTCGCCTCTGGCTGGCTGCAGCTC
TGAAAGCCTTTTTGCCGCACTTGAGTCTACTTCCAGCGCTGCTACGCCGC
CCTCCGCCGCAAATTCTCCTTCTTTTTGCTGAATCTGCGCTGATGCCGCG
TCGGCACCAGCAGTGGGCTCACAGACAGCATGGATGGGCTGCAGCTGTTG
CCGGGCTGGCGGCGGCGACGGCTGCGTCGACTTCAGAATGGAGGATCTAC
GGCATTTGTCGCCGCGATTCAGTACCTTCGGGGACCGAGGCGGCCGCTTT
GCAAAGGGCGCGATCAACCTGTGGCGCGTTCGTACGTGACTGTTAGCAAG
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14275:804..1704-

>mRNA_P-wetherbeei_contig14275.1.1 ID=mRNA_P-wetherbeei_contig14275.1.1|Name=mRNA_P-wetherbeei_contig14275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig14275:804..1704- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAAACCGTTCGTGATGGCATGTATGCTGCAAACGGCGGCGCTATG
CGGGCCCGGGGTACGGGGCCTGCAGACTTCACTCCCAGCGCTCTACTTGC
TACGATCGCTTTCCTGGGGGCTAACTGCACTGCCGTTCTGCCCGCCACGC
TGCAAGTTTATCAATGGTGGCGCCTGGCGGAAACGAGGCGCAATCTTTCC
GACATATGACTCCGCCGCCATGGCCCGCAGCCGGAGCAGGCGGAGGCCAC
CTGCGAGCCGCGCTTATATTTATTGCCTTGGCTGCCTGCCACGCCACCGA
TCAGCCTCTTCGGGACTAGCGCCATGTCCGTGGTGGGGAGGCAAATTGCA
GCAAGGTCAATCAGGTTTGAATCGCTGCCGGTCTCACTCGCCTCTGGCTG
GCTGCAGCTCTGAAAGCCTTTTTGCCGCACTTGAGTCTACTTCCAGCGCT
GCTACGCCGCCCTCCGCCGCAAATTCTCCTTCTTTTTGCTGA
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