mRNA_P-wetherbeei_contig14162.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14162.1.1
Unique NamemRNA_P-wetherbeei_contig14162.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14162.1.1 vs. uniprot
Match: UPI000345BB63 (carotenoid oxygenase family protein n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI000345BB63)

HSP 1 Score: 220 bits (560), Expect = 1.950e-70
Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = 1 
Query:    1 ERMIGLDARYGYLMALGGEGNSEEPVYGSALWKYDLRDGTCWEHQLGDGVRGAEPVFAPASADAGEDEGWVISLSHDTRSGESRLLILDAQNFSAPPVAIVHLPRRVPYGAHGSWVPDNAL 363
            +RMIGLDARYGYLMAL GEGNSEEPVYGSALWKYDL  GTC EH LGDGVRGAEPVFA ASAD+GEDEGWVISL+HDT S +SRL+I+DAQ+FSAPPVA VHLPRRVPYGAHGSWVPD A+
Sbjct:  130 DRMIGLDARYGYLMALAGEGNSEEPVYGSALWKYDLTTGTCTEHHLGDGVRGAEPVFAAASADSGEDEGWVISLTHDTSSDQSRLIIVDAQDFSAPPVATVHLPRRVPYGAHGSWVPDTAM 250
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BLAST of mRNA_P-wetherbeei_contig14162.1.1 vs. uniprot
Match: A0A7Y2EUD6_9ACTN (Dioxygenase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y2EUD6_9ACTN)

HSP 1 Score: 221 bits (563), Expect = 2.230e-68
Identity = 102/118 (86.44%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:    1 ERMIGLDARYGYLMALGGEGNSEEPVYGSALWKYDLRDGTCWEHQLGDGVRGAEPVFAPASADAGEDEGWVISLSHDTRSGESRLLILDAQNFSAPPVAIVHLPRRVPYGAHGSWVPD 354
            +R+IGLDARYGYLMA+ GEGN+EEPVYGSALWKYDLR GTC EHQLGDGVRGAEPVFAPAS DAGEDEGW+ISLSHDT S +SRLLI+DAQ+F+APPVA VHLPRRVPYGAHGSWVPD
Sbjct:  334 DRLIGLDARYGYLMAMAGEGNAEEPVYGSALWKYDLRTGTCTEHQLGDGVRGAEPVFAPASPDAGEDEGWIISLSHDTTSDQSRLLIIDAQDFAAPPVATVHLPRRVPYGAHGSWVPD 451
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BLAST of mRNA_P-wetherbeei_contig14162.1.1 vs. uniprot
Match: A0A2E3TR76_9ACTN (Dioxygenase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A2E3TR76_9ACTN)

HSP 1 Score: 216 bits (549), Expect = 2.780e-66
Identity = 99/121 (81.82%), Postives = 111/121 (91.74%), Query Frame = 1 
Query:    1 ERMIGLDARYGYLMALGGEGNSEEPVYGSALWKYDLRDGTCWEHQLGDGVRGAEPVFAPASADAGEDEGWVISLSHDTRSGESRLLILDAQNFSAPPVAIVHLPRRVPYGAHGSWVPDNAL 363
            +R +GLDARYGYLMAL GEGN+EEPVYGSALWKYDL+ G C EHQLGDGVRGAEPVFAPA++DA EDEGWVISLSHDT S +SRLLI+D+Q+FSAPPVA VHLPRRVPYGAHGSWVPD+ +
Sbjct:  334 DRRVGLDARYGYLMALAGEGNAEEPVYGSALWKYDLQTGACTEHQLGDGVRGAEPVFAPAASDAEEDEGWVISLSHDTTSDQSRLLIIDSQDFSAPPVATVHLPRRVPYGAHGSWVPDSVM 454
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BLAST of mRNA_P-wetherbeei_contig14162.1.1 vs. uniprot
Match: A0A7Y2GK01_9ACTN (Dioxygenase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GK01_9ACTN)

HSP 1 Score: 204 bits (519), Expect = 8.450e-62
Identity = 94/119 (78.99%), Postives = 106/119 (89.08%), Query Frame = 1 
Query:    1 ERMIGLDARYGYLMALGGEGNSEEPVYGSALWKYDLRDGTCWEHQLGDGVRGAEPVFAPASADAGEDEGWVISLSHDTRSGESRLLILDAQNFSAPPVAIVHLPRRVPYGAHGSWVPDN 357
            +RM+GLDA+YGYLM+LGGEGNSEEPVYG +L+KYDL  G CWEH LGD VRGAEPVFAPAS DAGEDEGWVISLSHD  + ESRL+I+DAQ+F+A PVAIVHLP RVPYGAHGSWVP +
Sbjct:  333 DRMVGLDAQYGYLMSLGGEGNSEEPVYGPSLYKYDLHSGECWEHFLGDNVRGAEPVFAPASPDAGEDEGWVISLSHDENTQESRLVIVDAQDFTADPVAIVHLPARVPYGAHGSWVPSS 451
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BLAST of mRNA_P-wetherbeei_contig14162.1.1 vs. uniprot
Match: A0A6C7EGN6_ILUCY (Dioxygenase n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7EGN6_ILUCY)

HSP 1 Score: 200 bits (508), Expect = 3.870e-60
Identity = 94/125 (75.20%), Postives = 105/125 (84.00%), Query Frame = 1 
Query:    1 ERMIGLDARYGYLMALGGEGNSEEPVYGSALWKYDLRDGTCWEHQLGDGVRGAEPVFAPASADAGE----DEGWVISLSHDTRSGESRLLILDAQNFSAPPVAIVHLPRRVPYGAHGSWVPDNAL 363
            +RM+GLDA+YGY+MA+ GEGN+EEPVYGSALWKYDLR G C EH LG GVRGAEPVFAPA  + GE    D GWVISL HDT S ESRL+I+DAQ+FSA PVA VHLPRR+PYGAHGSWVPD AL
Sbjct:  332 DRMVGLDAQYGYVMAMAGEGNAEEPVYGSALWKYDLRSGACVEHHLGTGVRGAEPVFAPADGNGGEAGDEDAGWVISLVHDTNSDESRLVIIDAQDFSAAPVATVHLPRRIPYGAHGSWVPDTAL 456
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BLAST of mRNA_P-wetherbeei_contig14162.1.1 vs. uniprot
Match: A0A2E6E315_9ACTN (Dioxygenase n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6E315_9ACTN)

HSP 1 Score: 197 bits (501), Expect = 3.570e-59
Identity = 88/121 (72.73%), Postives = 102/121 (84.30%), Query Frame = 1 
Query:    1 ERMIGLDARYGYLMALGGEGNSEEPVYGSALWKYDLRDGTCWEHQLGDGVRGAEPVFAPASADAGEDEGWVISLSHDTRSGESRLLILDAQNFSAPPVAIVHLPRRVPYGAHGSWVPDNAL 363
            +++IGLDA+YGYLMA+ GEGNSEEPVYGSALWKYDL  G CWEH LGD VRG EPVFAP    AGEDEGWVI++ HD     S+L+I+DAQ+F A PVA+VHLPRRVPYGAHGSWVPD+A+
Sbjct:  328 DKVIGLDAQYGYLMAMAGEGNSEEPVYGSALWKYDLHTGECWEHHLGDTVRGGEPVFAPDPNSAGEDEGWVIAIVHDEGKNSSKLIIIDAQDFGADPVAVVHLPRRVPYGAHGSWVPDSAV 448
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BLAST of mRNA_P-wetherbeei_contig14162.1.1 vs. uniprot
Match: A0A2E8NE55_9ACTN (Dioxygenase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8NE55_9ACTN)

HSP 1 Score: 185 bits (470), Expect = 1.390e-57
Identity = 78/121 (64.46%), Postives = 98/121 (80.99%), Query Frame = 1 
Query:    1 ERMIGLDARYGYLMALGGEGNSEEPVYGSALWKYDLRDGTCWEHQLGDGVRGAEPVFAPASADAGEDEGWVISLSHDTRSGESRLLILDAQNFSAPPVAIVHLPRRVPYGAHGSWVPDNAL 363
            + ++GLDA YGYLMA+ GEGNSEEPVYGSALWKYDL  G CWEH LG+GVRG EPVFA      GEDEGW+I++ H   +G S+++I+DAQ+F + P+A +HLP+RVPYGAHGSW+PD +L
Sbjct:   70 DSVVGLDANYGYLMAMAGEGNSEEPVYGSALWKYDLHTGKCWEHHLGEGVRGGEPVFAADPESNGEDEGWIITIVHSETTGSSKMIIVDAQDFESEPIATIHLPQRVPYGAHGSWIPDTSL 190
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BLAST of mRNA_P-wetherbeei_contig14162.1.1 vs. uniprot
Match: A0A2E0RAH5_9ACTN (Dioxygenase n=4 Tax=Actinobacteria TaxID=201174 RepID=A0A2E0RAH5_9ACTN)

HSP 1 Score: 186 bits (471), Expect = 1.040e-54
Identity = 78/121 (64.46%), Postives = 98/121 (80.99%), Query Frame = 1 
Query:    1 ERMIGLDARYGYLMALGGEGNSEEPVYGSALWKYDLRDGTCWEHQLGDGVRGAEPVFAPASADAGEDEGWVISLSHDTRSGESRLLILDAQNFSAPPVAIVHLPRRVPYGAHGSWVPDNAL 363
            + ++GLDA YGYLMA+ GEGNSEEPVYGSALWKYDLR G CWEH LG+GVRG EP FA      GEDEGW+I++ H   +G S+++I+DAQ+F + P+A +HLP+RVPYGAHGSW+PD +L
Sbjct:  328 DSVVGLDANYGYLMAMAGEGNSEEPVYGSALWKYDLRTGKCWEHHLGEGVRGGEPAFAADPESDGEDEGWIITIVHSETTGSSKMIIVDAQDFESEPIATIHLPQRVPYGAHGSWIPDTSL 448
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BLAST of mRNA_P-wetherbeei_contig14162.1.1 vs. uniprot
Match: A0A0C1RFF6_9ACTN (Dioxygenase n=5 Tax=Actinobacteria TaxID=201174 RepID=A0A0C1RFF6_9ACTN)

HSP 1 Score: 185 bits (469), Expect = 1.940e-54
Identity = 83/121 (68.60%), Postives = 99/121 (81.82%), Query Frame = 1 
Query:    1 ERMIGLDARYGYLMALGGEGNSEEPVYGSALWKYDLRDGTCWEHQLGDGVRGAEPVFAPASADAGEDEGWVISLSHDTRSGESRLLILDAQNFSAPPVAIVHLPRRVPYGAHGSWVPDNAL 363
            ++++GLDA YGYLMA+ GEGNSEEPVYGSALWKYDLR G C EH LGD VRG EPVFAP     GEDEGWVI++ H  +S  S+L+I+DAQ+F + PVA VHLPRRVPYGAHGSW+ D+A+
Sbjct:  325 DKVVGLDANYGYLMAMAGEGNSEEPVYGSALWKYDLRTGFCLEHHLGDEVRGGEPVFAPDPNSDGEDEGWVIAVVHSEKSNASKLIIIDAQDFESDPVATVHLPRRVPYGAHGSWIADSAI 445
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BLAST of mRNA_P-wetherbeei_contig14162.1.1 vs. uniprot
Match: A0A2E4XKJ1_9ACTN (Dioxygenase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4XKJ1_9ACTN)

HSP 1 Score: 184 bits (468), Expect = 2.910e-54
Identity = 82/121 (67.77%), Postives = 100/121 (82.64%), Query Frame = 1 
Query:    1 ERMIGLDARYGYLMALGGEGNSEEPVYGSALWKYDLRDGTCWEHQLGDGVRGAEPVFAPASADAGEDEGWVISLSHDTRSGESRLLILDAQNFSAPPVAIVHLPRRVPYGAHGSWVPDNAL 363
            +++IGL+A++GYLMA+ GEGNSEEPVYGSALWKYDLR G C EH LG  VRG EPVFA      GEDEGWVI++ HD R+  S+L+I+DAQ+F A PVA+VH+PRRVPYGAHGSW+PD+ L
Sbjct:  328 DKVIGLNAQFGYLMAMAGEGNSEEPVYGSALWKYDLRTGVCLEHHLGKNVRGGEPVFAADPDSEGEDEGWVITIVHDERANTSKLIIVDAQDFEADPVAVVHIPRRVPYGAHGSWIPDDKL 448
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14162.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000345BB631.950e-7085.12carotenoid oxygenase family protein n=1 Tax=Ilumat... [more]
A0A7Y2EUD6_9ACTN2.230e-6886.44Dioxygenase n=1 Tax=Ilumatobacter sp. TaxID=196749... [more]
A0A2E3TR76_9ACTN2.780e-6681.82Dioxygenase n=1 Tax=Ilumatobacter sp. TaxID=196749... [more]
A0A7Y2GK01_9ACTN8.450e-6278.99Dioxygenase n=1 Tax=Acidimicrobiales bacterium Tax... [more]
A0A6C7EGN6_ILUCY3.870e-6075.20Dioxygenase n=1 Tax=Ilumatobacter coccineus (strai... [more]
A0A2E6E315_9ACTN3.570e-5972.73Dioxygenase n=3 Tax=Acidimicrobiaceae bacterium Ta... [more]
A0A2E8NE55_9ACTN1.390e-5764.46Dioxygenase (Fragment) n=1 Tax=Acidimicrobiaceae b... [more]
A0A2E0RAH5_9ACTN1.040e-5464.46Dioxygenase n=4 Tax=Actinobacteria TaxID=201174 Re... [more]
A0A0C1RFF6_9ACTN1.940e-5468.60Dioxygenase n=5 Tax=Actinobacteria TaxID=201174 Re... [more]
A0A2E4XKJ1_9ACTN2.910e-5467.77Dioxygenase n=1 Tax=Acidimicrobiaceae bacterium Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14162contigP-wetherbeei_contig14162:8..376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1313172.YM304_39850
PFAMsRPE65
Model size369
Max annot lvl201174|Actinobacteria
KEGG koko:K11159
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.12e-60
EggNOG OGsCOG3670@1|root,COG3670@2|Bacteria,2GK7D@201174|Actinobacteria
Descriptiondioxygenase
Cds size363
COG categoryQ
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186011.1806054-UTR-P-wetherbeei_contig14162:7..131683186011.1806054-UTR-P-wetherbeei_contig14162:7..13Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14162 8..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186011.1900954-CDS-P-wetherbeei_contig14162:13..3761683186011.1900954-CDS-P-wetherbeei_contig14162:13..376Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14162 14..376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14162.1.1prot_P-wetherbeei_contig14162.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14162 14..376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14162.1.1

>prot_P-wetherbeei_contig14162.1.1 ID=prot_P-wetherbeei_contig14162.1.1|Name=mRNA_P-wetherbeei_contig14162.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MIGLDARYGYLMALGGEGNSEEPVYGSALWKYDLRDGTCWEHQLGDGVRG
AEPVFAPASADAGEDEGWVISLSHDTRSGESRLLILDAQNFSAPPVAIVH
LPRRVPYGAHGSWVPDNALR*
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mRNA from alignment at P-wetherbeei_contig14162:8..376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14162.1.1 ID=mRNA_P-wetherbeei_contig14162.1.1|Name=mRNA_P-wetherbeei_contig14162.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig14162:8..376+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGGATGATCGGGCTCGACGCGCGCTACGGCTACCTGATGGCCCTCGG
CGGCGAGGGCAACAGCGAGGAGCCCGTGTACGGGTCGGCGCTGTGGAAGT
ACGACCTGCGCGACGGCACGTGCTGGGAGCACCAGCTCGGTGACGGCGTG
CGCGGTGCCGAGCCGGTGTTCGCGCCGGCATCAGCGGATGCCGGCGAGGA
CGAAGGCTGGGTGATCAGCCTGTCGCACGACACGCGGTCGGGCGAGTCGC
GGTTGCTGATCCTCGACGCACAGAACTTCTCGGCGCCGCCTGTTGCCATC
GTTCACCTGCCGCGCCGCGTGCCGTACGGCGCTCACGGCAGTTGGGTGCC
CGACAACGCCCTGCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14162:8..376+

>mRNA_P-wetherbeei_contig14162.1.1 ID=mRNA_P-wetherbeei_contig14162.1.1|Name=mRNA_P-wetherbeei_contig14162.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig14162:8..376+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGGGCTCGACGCGCGCTACGGCTACCTGATGGCCCTCGGCGGCGA
GGGCAACAGCGAGGAGCCCGTGTACGGGTCGGCGCTGTGGAAGTACGACC
TGCGCGACGGCACGTGCTGGGAGCACCAGCTCGGTGACGGCGTGCGCGGT
GCCGAGCCGGTGTTCGCGCCGGCATCAGCGGATGCCGGCGAGGACGAAGG
CTGGGTGATCAGCCTGTCGCACGACACGCGGTCGGGCGAGTCGCGGTTGC
TGATCCTCGACGCACAGAACTTCTCGGCGCCGCCTGTTGCCATCGTTCAC
CTGCCGCGCCGCGTGCCGTACGGCGCTCACGGCAGTTGGGTGCCCGACAA
CGCCCTGCGTTGA
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