mRNA_P-wetherbeei_contig14124.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14124.1.1
Unique NamemRNA_P-wetherbeei_contig14124.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14124.1.1 vs. uniprot
Match: A0A835ZF78_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF78_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.910e-25
Identity = 46/80 (57.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:   40 GWPVAHDILGSTAFSRREFKKTFNRYSDNIYMAPDDDRANDYLDGGATPDSRQTMQYLLRNDALGHIEDLSAEVAYLLRE 279
            GW  A ++L S+A+S +E K+ FNRYSDNIY+     RAN YLDGGA P S++T QYLLRN+ L H+++L+AE+AYLLR+
Sbjct:   42 GWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRD 121          
BLAST of mRNA_P-wetherbeei_contig14124.1.1 vs. uniprot
Match: D8LLI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI5_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.300e-24
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 1
Query:    1 LDALDDLLADPDSGWPVAHDILGSTAFSRREFKKTFNRYSDNIYMAPDDDRANDYLDGGATPDSRQTMQYLLRNDALGHIEDLSAEVAYLLREQSS 288
            LD +++ L DP   +  A  IL +  F +++ K+ FN YSDNIY  PD DR N YL GGATP SRQT+QYLLRND + ++E L+AE+AYL+RE+ S
Sbjct:   85 LDEVENNLKDP-RRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERES 179          
BLAST of mRNA_P-wetherbeei_contig14124.1.1 vs. uniprot
Match: A0A6H5J809_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J809_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.440e-22
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    1 LDALDDLLADPDSGWPVAHDILGSTAFSRREFKKTFNRYSDNIYMAPDDDRANDYLDGGATPDSRQTMQYLLRNDALGHIEDLSAEVAYLLREQ 282
            LD ++  L DP   +  A  IL +  F +++ K+ FN YSDNIY  PD DR N YL GGATP SRQT+QYLLRND + ++E L+AE++YL+RE+
Sbjct:  152 LDEVESNLKDPRL-FGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEISYLIRER 244          
BLAST of mRNA_P-wetherbeei_contig14124.1.1 vs. uniprot
Match: A0A7S0CDG2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDG2_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.050e-19
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query:   37 SGWPVAHDILGSTAFSRREFKKTFNRYSDNIYMAPDDDRANDYLDGGATPDSRQTMQYLLRNDALGHIEDLSAEVAYLLRE 279
            +G  +A D+L +  F +++FKKTFN + DNIY   D DRAN YL GGATP   Q+M YL+RND L ++E L AEV YL+ E
Sbjct:   56 NGLKLASDVLTNPQFEKKQFKKTFNAFGDNIYYT-DPDRANLYLGGGATPSKEQSMAYLIRNDILTNVEALQAEVVYLVAE 135          
BLAST of mRNA_P-wetherbeei_contig14124.1.1 vs. uniprot
Match: A0A7S2D3D0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3D0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.930e-19
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 1
Query:   37 SGWPVAHDILGSTAFSRRE-FKKTFNRYSDNIYMAPDDDRANDYLDGGATPDSRQTMQYLLRNDALGHIEDLSAEVAYLLR 276
            S W    D L    ++ ++ FK  FNRY+DNIY+A  DDRAN YL GG TP S QT+QY+LRND L ++++++ E+ YLLR
Sbjct:   22 SCWKAVLDTLSKEPYAPKQAFKSVFNRYADNIYLAKGDDRANAYLGGGGTPSSLQTVQYMLRNDLLTNLDNVTQELQYLLR 102          
BLAST of mRNA_P-wetherbeei_contig14124.1.1 vs. uniprot
Match: F0YEM6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEM6_AURAN)

HSP 1 Score: 87.4 bits (215), Expect = 6.280e-18
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   22 LADPDSGWPVAHDILGSTAFSRREFKKTFNRYSDNIYMAPDD-DRANDYLDGGATPDSRQTMQYLLRNDALGHIEDLSAEVAYLLREQSSRTD 297
            L D   GW  A   L   AF ++ FK+ FN YSDN+Y    D DRAN YL GG  P ++QT+QYL RNDAL ++E L +E+ YLL  +   +D
Sbjct:  140 LLDSRDGWTKARKTLSDPAFEKKNFKRAFNAYSDNVYYERSDPDRANLYLLGGTPPSNKQTIQYLHRNDALDNVEKLQSEIDYLLTNKDGDSD 232          
BLAST of mRNA_P-wetherbeei_contig14124.1.1 vs. uniprot
Match: K0T7U8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T7U8_THAOC)

HSP 1 Score: 85.5 bits (210), Expect = 7.710e-18
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   58 DILGSTAFSRREFKKTFNRYSDNIYMAPDDDRANDYLDGGATPDSRQTMQYLLRNDALGHIEDLSAEVAYLLREQSS 288
            +I+  + F +  FKKTFN YSDNIY + D DRAN YL GGATP   Q++ YL+RND LG++ED+ AEV YL +E  S
Sbjct:  169 EIISKSIFDKIAFKKTFNAYSDNIYYS-DPDRANLYLGGGATPRPTQSLAYLMRNDILGNVEDVRAEVPYLKKEIGS 244          
BLAST of mRNA_P-wetherbeei_contig14124.1.1 vs. uniprot
Match: A0A7R9WN96_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WN96_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.630e-17
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   34 DSGWPVAHDILGSTAFSRREFKKTFNRYSDNIYMAPDDDRANDYLDGGATPDSRQTMQYLLRNDALGHIEDLSAEVAYLLREQSSRTD 297
            +S WP A  I+    + +  FKK FN Y DNIY + D DRAN YL GGATP + Q++ YLLRND L ++E+L AE+ YL++     T+
Sbjct:  206 ESRWPDALTIMQQKKYEKIPFKKAFNAYGDNIYYS-DPDRANVYLGGGATPKTEQSLAYLLRNDVLTNVENLRAELEYLMKSGEKETE 292          
BLAST of mRNA_P-wetherbeei_contig14124.1.1 vs. uniprot
Match: A0A7S3Q034_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q034_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.150e-17
Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    4 DALDDLLADPDS-GWPVAHDILGSTAFSRREFKKTFNRYSDNIYMAPDDDRANDYLDGGATPDSRQTMQYLLRNDALGHIEDLSAEVAYLLRE 279
            D LD L+  P+  G   A  IL    + + +FKKTFN ++DNIY + D DRAN YL GGA P + Q++ YL+RND L ++E+L AEV YL++E
Sbjct:  178 DELDTLVHMPNGDGLAQADIILSKKQYEKLQFKKTFNAFADNIYYS-DPDRANAYLGGGAVPKNEQSIAYLIRNDVLTNVENLQAEVTYLIKE 269          
BLAST of mRNA_P-wetherbeei_contig14124.1.1 vs. uniprot
Match: A0A1Z5KPH8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KPH8_FISSO)

HSP 1 Score: 80.9 bits (198), Expect = 2.440e-16
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   61 ILGSTAFSRREFKKTFNRYSDNIYMAPDDDRANDYLDGGATPDSRQTMQYLLRNDALGHIEDLSAEVAYLLREQSSRTDTA 303
            I+    + + EFKK FN Y DNIY + D DRAN YL GGATP + QT+ YL RN+ L ++EDL AEVA+LL+ +    + A
Sbjct:  139 IIRQKRYEKIEFKKIFNAYGDNIYYS-DPDRANMYLGGGATPKNEQTLAYLQRNEILTNVEDLQAEVAFLLKNREESPEDA 218          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14124.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A835ZF78_9STRA3.910e-2557.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LLI5_ECTSI1.300e-2453.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J809_9PHAE1.440e-2252.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0CDG2_9STRA2.050e-1953.09Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2D3D0_9STRA3.930e-1950.62Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0YEM6_AURAN6.280e-1847.31Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
K0T7U8_THAOC7.710e-1855.84Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7R9WN96_9STRA1.630e-1747.73Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3Q034_9STRA5.150e-1748.39Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5KPH8_FISSO2.440e-1650.62Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14124contigP-wetherbeei_contig14124:16..474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLI5
Model size309
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.14e-25
EggNOG OGs2E2DA@1|root,2S9M9@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_001090.1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186009.869814-CDS-P-wetherbeei_contig14124:15..2221683186009.869814-CDS-P-wetherbeei_contig14124:15..222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14124 16..222 +
1683186009.8781075-CDS-P-wetherbeei_contig14124:372..4741683186009.8781075-CDS-P-wetherbeei_contig14124:372..474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14124 373..474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14124.1.1prot_P-wetherbeei_contig14124.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14124 16..474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14124.1.1

>prot_P-wetherbeei_contig14124.1.1 ID=prot_P-wetherbeei_contig14124.1.1|Name=mRNA_P-wetherbeei_contig14124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
LDALDDLLADPDSGWPVAHDILGSTAFSRREFKKTFNRYSDNIYMAPDDD
RANDYLDGGATPDSRQTMQYLLRNDALGHIEDLSAEVAYLLREQSSRTDT
AAA
back to top

mRNA from alignment at P-wetherbeei_contig14124:16..474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14124.1.1 ID=mRNA_P-wetherbeei_contig14124.1.1|Name=mRNA_P-wetherbeei_contig14124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig14124:16..474+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGACGCCCTCGACGACCTGCTGGCAGACCCCGACAGCGGGTGGCCCGT GGCGCACGATATCTTGGGCAGTACGGCGTTCAGCCGTCGCGAGTTTAAGA AGACCTTTAACCGTTACAGCGACAACATTTACATGGCGCCCGACGACGAC CGCGCAAATGACTACCTGGACGGCGGGGCTACGCCCGACTCGCGGCAGAC GATGCAGGTGGATGTCCTTTGTGACTCATCTCTATTCTTCTCGGTCCTGC CTCCGTCTTTTGTCAAGTTCTTGGGTAGCGGCTACGGTATGATTGGGCGT GTCGCAACTTACGTCATTAATTCCTCCTGCCGATTTTGGCTTCTACCGTC CCGGCAGTACCTGTTGCGAAACGACGCCTTGGGCCACATCGAGGACCTTT CGGCGGAGGTCGCGTACCTCCTCAGAGAACAGAGCAGCCGGACAGACACG GCGGCGGCA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14124:16..474+

>mRNA_P-wetherbeei_contig14124.1.1 ID=mRNA_P-wetherbeei_contig14124.1.1|Name=mRNA_P-wetherbeei_contig14124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig14124:16..474+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGACGCCCTCGACGACCTGCTGGCAGACCCCGACAGCGGGTGGCCCGT
GGCGCACGATATCTTGGGCAGTACGGCGTTCAGCCGTCGCGAGTTTAAGA
AGACCTTTAACCGTTACAGCGACAACATTTACATGGCGCCCGACGACGAC
CGCGCAAATGACTACCTGGACGGCGGGGCTACGCCCGACTCGCGGCAGAC
GATGCAGTACCTGTTGCGAAACGACGCCTTGGGCCACATCGAGGACCTTT
CGGCGGAGGTCGCGTACCTCCTCAGAGAACAGAGCAGCCGGACAGACACG
GCGGCGGCA
back to top