mRNA_P-wetherbeei_contig10329.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10329.1.1
Unique NamemRNA_P-wetherbeei_contig10329.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10329.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10329contigP-wetherbeei_contig10329:326..2227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1675
Hectar predicted targeting categoryother localisation
Exons2
Cds size1386
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.9587038-UTR-P-wetherbeei_contig10329:325..5991683185863.9587038-UTR-P-wetherbeei_contig10329:325..599Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10329 326..599 +
1683185864.0008638-UTR-P-wetherbeei_contig10329:2212..22271683185864.0008638-UTR-P-wetherbeei_contig10329:2212..2227Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10329 2213..2227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.9685693-CDS-P-wetherbeei_contig10329:599..13201683185863.9685693-CDS-P-wetherbeei_contig10329:599..1320Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10329 600..1320 +
1683185863.980125-CDS-P-wetherbeei_contig10329:1547..22121683185863.980125-CDS-P-wetherbeei_contig10329:1547..2212Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10329 1548..2212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10329.1.1prot_P-wetherbeei_contig10329.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10329 600..2212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10329.1.1

>prot_P-wetherbeei_contig10329.1.1 ID=prot_P-wetherbeei_contig10329.1.1|Name=mRNA_P-wetherbeei_contig10329.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=462bp
MVLETTQQPRWGRSSNRETAAAAVAAATAAADNGVSRDGSAAVGGNSADV
LQGPALMRCVEEMRAEVAALEAEAAAAQETTAEAQLWGAELRRLRVICER
EEDALAAAVTVAVVAAAEVGESSAHGASERCRSWRDNASAAHDVDGEAGG
DAGGSDGSGRDDGTDGGGCEESETDDEVLLLDCDDPVTPVASPKGHTSRL
SGWEEAASPEDAEEDVASPTASTAKRESEGAEDAEALICLVEDVAGTAEV
DTSAEDAAMVAAHCDDPSRAAAPSSAEGQAAVADAAPALLLPMAITDGAF
LAAGSENYWGSERTGGSCSGRCVPPGAAATAAAAAATVLSPCNKQPRDTT
SENDNSVGSANSCSSSADSDAAPVAAAASPAAEGSKAPSRPTAATASVVV
GPQSCRRSTPTMVASPKLGVGGADRKGAPRTRSGGARAGGGCSAGARAGM
AAERGVAAPLL*
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mRNA from alignment at P-wetherbeei_contig10329:326..2227+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10329.1.1 ID=mRNA_P-wetherbeei_contig10329.1.1|Name=mRNA_P-wetherbeei_contig10329.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1902bp|location=Sequence derived from alignment at P-wetherbeei_contig10329:326..2227+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCGGCGCGGCGGCGGCGGCAGCAGCGGCATTTTGGAGGGCCGCCGCGT
TGGGGGGGAAGCCGTGGGGGGCTGAGCCTTCAGCCGCCGCCCGGGGAAAC
CCAGAGGACTACGTGCAGCTGGCCGCCGGGGCTTCGGGGTTTGCCGCATC
AGCGGCGCGGACGGCACCATTGTCTGGGCCATCGCGGGCGCCACCGCCGC
CGGTGTGGGGGCCGTTGGCAGGTGGGGCGGGAAAGGGTAATGCAGCTATA
GCAGCGGCAGCGGCATCCAAGCTGATGGTATTAGAAACGACGCAGCAGCC
ACGATGGGGAAGGAGCAGCAACCGCGAGACGGCGGCGGCAGCGGTTGCTG
CGGCCACTGCTGCAGCTGACAACGGCGTCAGCAGAGACGGCAGCGCCGCC
GTCGGCGGCAACAGCGCTGACGTGCTGCAGGGACCGGCGCTGATGCGATG
CGTCGAAGAAATGCGCGCCGAAGTGGCGGCTCTCGAGGCGGAGGCGGCGG
CGGCGCAAGAAACGACGGCGGAGGCGCAGCTCTGGGGTGCCGAGCTGCGC
CGGCTGCGGGTCATTTGCGAGAGGGAGGAGGACGCGCTCGCGGCGGCTGT
GACGGTGGCGGTGGTGGCGGCAGCGGAAGTCGGCGAATCCTCGGCGCATG
GAGCATCAGAGCGATGCAGGAGCTGGAGAGACAATGCGAGCGCGGCACAC
GACGTAGATGGCGAGGCCGGCGGCGACGCAGGCGGCAGCGATGGCAGCGG
CAGGGATGACGGTACTGACGGCGGCGGCTGCGAGGAGTCGGAAACTGACG
ATGAGGTCCTGCTGCTGGACTGCGACGACCCGGTGACGCCCGTCGCCTCG
CCGAAGGGTCACACATCGCGGCTGTCGGGATGGGAGGAGGCGGCATCGCC
AGAGGATGCGGAGGAGGATGTGGCATCGCCGACGGCGAGCACGGCGAAAA
GGGAATCGGAAGGAGCGGAGGACGCAGAAGCCCTCATCTGCCTCGGTGAG
TCTCTTGTCTCTGGTTTCTTTCCGTGACAAATTTCTAGCGTCTGTGCCTT
TCCGTGGCCAGTCTCTTGCTGCTCTGTTTCTGCTGCTTCTAGCTGCAGCA
CCTTTCTCCATTTCGAGAGGCCGACGTCCAGGACACAGCACAGACTAACT
ATTCTTTCTCATGCTACCTGCCTTTGTCCGCGAAACCGCGGCGCTCTTCC
CTCCCAAAAAATGTTGTGACAGTAGAAGATGTCGCAGGAACGGCCGAGGT
GGACACTTCTGCCGAAGATGCCGCAATGGTGGCGGCGCATTGCGATGACC
CTTCGCGGGCTGCAGCGCCCAGCTCCGCCGAGGGCCAGGCTGCCGTTGCC
GACGCCGCTCCAGCGCTGCTGCTCCCGATGGCGATCACTGACGGTGCTTT
TCTTGCTGCTGGCAGCGAGAATTACTGGGGCAGTGAGCGCACCGGTGGCA
GCTGCAGCGGCCGTTGCGTGCCGCCTGGCGCGGCTGCGACTGCGGCCGCT
GCTGCCGCCACCGTGCTGTCCCCATGTAACAAGCAGCCAAGAGACACGAC
GTCGGAAAACGACAACAGCGTCGGATCTGCCAACAGTTGTTCAAGCTCTG
CCGACAGCGACGCTGCGCCCGTCGCTGCCGCGGCATCGCCGGCAGCGGAA
GGGTCCAAGGCGCCTAGCCGGCCCACGGCGGCGACGGCGTCGGTGGTGGT
CGGTCCGCAAAGCTGCAGGCGGAGCACTCCCACTATGGTGGCGTCGCCCA
AATTGGGTGTGGGTGGCGCTGATCGCAAGGGCGCGCCACGGACGAGGTCG
GGCGGCGCCCGTGCTGGCGGCGGCTGCAGCGCCGGAGCGCGTGCAGGAAT
GGCTGCTGAGCGCGGGGTCGCTGCGCCATTGCTTTAATAAAATGATTGGC
AT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10329:326..2227+

>mRNA_P-wetherbeei_contig10329.1.1 ID=mRNA_P-wetherbeei_contig10329.1.1|Name=mRNA_P-wetherbeei_contig10329.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1386bp|location=Sequence derived from alignment at P-wetherbeei_contig10329:326..2227+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTATTAGAAACGACGCAGCAGCCACGATGGGGAAGGAGCAGCAACCG
CGAGACGGCGGCGGCAGCGGTTGCTGCGGCCACTGCTGCAGCTGACAACG
GCGTCAGCAGAGACGGCAGCGCCGCCGTCGGCGGCAACAGCGCTGACGTG
CTGCAGGGACCGGCGCTGATGCGATGCGTCGAAGAAATGCGCGCCGAAGT
GGCGGCTCTCGAGGCGGAGGCGGCGGCGGCGCAAGAAACGACGGCGGAGG
CGCAGCTCTGGGGTGCCGAGCTGCGCCGGCTGCGGGTCATTTGCGAGAGG
GAGGAGGACGCGCTCGCGGCGGCTGTGACGGTGGCGGTGGTGGCGGCAGC
GGAAGTCGGCGAATCCTCGGCGCATGGAGCATCAGAGCGATGCAGGAGCT
GGAGAGACAATGCGAGCGCGGCACACGACGTAGATGGCGAGGCCGGCGGC
GACGCAGGCGGCAGCGATGGCAGCGGCAGGGATGACGGTACTGACGGCGG
CGGCTGCGAGGAGTCGGAAACTGACGATGAGGTCCTGCTGCTGGACTGCG
ACGACCCGGTGACGCCCGTCGCCTCGCCGAAGGGTCACACATCGCGGCTG
TCGGGATGGGAGGAGGCGGCATCGCCAGAGGATGCGGAGGAGGATGTGGC
ATCGCCGACGGCGAGCACGGCGAAAAGGGAATCGGAAGGAGCGGAGGACG
CAGAAGCCCTCATCTGCCTCGTAGAAGATGTCGCAGGAACGGCCGAGGTG
GACACTTCTGCCGAAGATGCCGCAATGGTGGCGGCGCATTGCGATGACCC
TTCGCGGGCTGCAGCGCCCAGCTCCGCCGAGGGCCAGGCTGCCGTTGCCG
ACGCCGCTCCAGCGCTGCTGCTCCCGATGGCGATCACTGACGGTGCTTTT
CTTGCTGCTGGCAGCGAGAATTACTGGGGCAGTGAGCGCACCGGTGGCAG
CTGCAGCGGCCGTTGCGTGCCGCCTGGCGCGGCTGCGACTGCGGCCGCTG
CTGCCGCCACCGTGCTGTCCCCATGTAACAAGCAGCCAAGAGACACGACG
TCGGAAAACGACAACAGCGTCGGATCTGCCAACAGTTGTTCAAGCTCTGC
CGACAGCGACGCTGCGCCCGTCGCTGCCGCGGCATCGCCGGCAGCGGAAG
GGTCCAAGGCGCCTAGCCGGCCCACGGCGGCGACGGCGTCGGTGGTGGTC
GGTCCGCAAAGCTGCAGGCGGAGCACTCCCACTATGGTGGCGTCGCCCAA
ATTGGGTGTGGGTGGCGCTGATCGCAAGGGCGCGCCACGGACGAGGTCGG
GCGGCGCCCGTGCTGGCGGCGGCTGCAGCGCCGGAGCGCGTGCAGGAATG
GCTGCTGAGCGCGGGGTCGCTGCGCCATTGCTTTAA
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