mRNA_P-wetherbeei_contig13938.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13938.2.1
Unique NamemRNA_P-wetherbeei_contig13938.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13938.2.1 vs. uniprot
Match: A0A7X8XM27_9BURK (zf-trcl domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XM27_9BURK)

HSP 1 Score: 130 bits (326), Expect = 6.980e-36
Identity = 63/117 (53.85%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    7 FADRNLTCIDCKQPFVFTAGEQEFHAAKGFTNEPKRCPACRTARKGGAXXXXXXXXFSDRGPRSFGSDSGFGXXXXXXXGGGMRREMHSAICAECGKETQVPFVPSGARPVYCRDCY 357
            + DRNLTC DC   FVFTAGEQEFHA+KGFT+EP+RCP CR ARK               GPR   SD+           G   R+M  A+CAECGK+TQVPF P+G+RPVYC DC+
Sbjct:    3 YQDRNLTCADCGAEFVFTAGEQEFHASKGFTSEPRRCPGCRAARKAAQGG----------GPRGGSSDA---------FSGRPARQMFDAVCAECGKDTQVPFQPTGSRPVYCSDCF 100          
BLAST of mRNA_P-wetherbeei_contig13938.2.1 vs. uniprot
Match: A0A0F9HLN9_9ZZZZ (zf-trcl domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9HLN9_9ZZZZ)

HSP 1 Score: 126 bits (317), Expect = 1.730e-35
Identity = 61/122 (50.00%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 VSFADRNLTCIDCKQPFVFTAGEQEFHAAKGFTNEPKRCPACRTARKGGAXXXXXXXXFSDRGPRSFGSDSGFGXXXXXXXGGGMRREMHSAICAECGKETQVPFVPSGARPVYCRDCYSQQ 366
            +S+ DR LTC DC Q F F+A +Q++HA KG+TNEPKRC +CR AR+            S+RG      D G+         G  RREMH A+CA+CGK+TQVPF+P G RPVYC DC+S+Q
Sbjct:    1 MSYQDRTLTCQDCGQSFTFSADDQQYHAEKGYTNEPKRCSSCRQARR------------SERG------DGGYSSY------GSSRREMHPAVCAQCGKDTQVPFLPRGDRPVYCSDCFSKQ 98          
BLAST of mRNA_P-wetherbeei_contig13938.2.1 vs. uniprot
Match: A0A355BKG2_9FIRM (Zinc-binding protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A355BKG2_9FIRM)

HSP 1 Score: 125 bits (314), Expect = 4.130e-35
Identity = 62/119 (52.10%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    7 FADRNLTCIDCKQPFVFTAGEQEFHAAKGFTNEPKRCPACRTARKGGAXXXXXXXXFSDRGPRSFGSDSGFGXXXXXXXGGGMR--REMHSAICAECGKETQVPFVPSGARPVYCRDCY 357
            ++D+ LTC DC + FVFTAGEQEF+A +GF NEP RCP CR ARK                                  GGGMR  REMH+ ICAECGKETQVPF PSG RPVYC+DC+
Sbjct:    2 YSDKTLTCRDCGKEFVFTAGEQEFYATRGFQNEPSRCPECRAARKA-----------------------------QNNNGGGMRQPREMHTVICAECGKETQVPFKPSGDRPVYCQDCF 91          
BLAST of mRNA_P-wetherbeei_contig13938.2.1 vs. uniprot
Match: A0A2E5F4F0_9CHLR (Zinc-binding protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E5F4F0_9CHLR)

HSP 1 Score: 125 bits (313), Expect = 6.410e-35
Identity = 61/120 (50.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 VSFADRNLTCIDCKQPFVFTAGEQEFHAAKGFTNEPKRCPACRTARKGGAXXXXXXXXFSDRGPRSFGSDSGFGXXXXXXXGGGMRREMHSAICAECGKETQVPFVPSGARPVYCRDCYS 360
            + + DR L+C+DC QPF+F+A +Q FHA KGFTNEPKRCPACR AR+            ++RG        GFG            REMH A+CA+CGKET VPF P G RPVYC DC+S
Sbjct:    1 MDYEDRTLSCVDCGQPFIFSADDQAFHAEKGFTNEPKRCPACRQARR------------AERG-------GGFGQGP---------REMHPAVCADCGKETTVPFRPRGDRPVYCSDCFS 92          
BLAST of mRNA_P-wetherbeei_contig13938.2.1 vs. uniprot
Match: A5UU44_ROSS1 (zf-trcl domain-containing protein n=2 Tax=Roseiflexus TaxID=120961 RepID=A5UU44_ROSS1)

HSP 1 Score: 125 bits (313), Expect = 1.160e-34
Identity = 64/124 (51.61%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 VSFADRNLTCIDCKQPFVFTAGEQEFHAAKGFTNEPKRCPACRTARK--GGAXXXXXXXXFSDRGPRSFGSDSGFGXXXXXXXGGGMRREMHSAICAECGKETQVPFVPSGARPVYCRDCYSQQ 366
            +SFAD+ LTC DC   FVFT+GEQEF+A KGFTNEP RCP+CR  RK  GG         +SDR    +G +  +G       G G  R+MHS  CA CG+E  VPFVP G +PVYC DC+  Q
Sbjct:    1 MSFADKTLTCRDCGVDFVFTSGEQEFYAQKGFTNEPTRCPSCRQQRKTSGGGRG------YSDR--NGYGRNDSYGAGRG---GYGGERQMHSTTCASCGREALVPFVPRGDKPVYCSDCFQDQ 113          
BLAST of mRNA_P-wetherbeei_contig13938.2.1 vs. uniprot
Match: A0A2W4LQC7_9CHLR (zf-trcl domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W4LQC7_9CHLR)

HSP 1 Score: 124 bits (312), Expect = 1.300e-34
Identity = 61/124 (49.19%), Postives = 72/124 (58.06%), Query Frame = 1
Query:    1 VSFADRNLTCIDCKQPFVFTAGEQEFHAAKGFTNEPKRCPACRTARKGGAXXXXXXXXFSDRGPRSFGSDSGFGXXXXXXXGGGM--RREMHSAICAECGKETQVPFVPSGARPVYCRDCYSQQ 366
            +SFA++ LTC DC   F+FTAGEQEF+A KGFTNEP RCP CR A K GA                 G    +G       GGG    R+M++  CA CG E QVPFVP G +PVYC DC+ QQ
Sbjct:    1 MSFANKTLTCRDCGTDFIFTAGEQEFYAQKGFTNEPSRCPPCRQAHKAGARN---------------GGGGSYGQRNSFSSGGGYSGERQMYTTTCASCGNEAQVPFVPRGDKPVYCSDCFRQQ 109          
BLAST of mRNA_P-wetherbeei_contig13938.2.1 vs. uniprot
Match: A0A382XVU5_9ZZZZ (zf-trcl domain-containing protein n=15 Tax=root TaxID=1 RepID=A0A382XVU5_9ZZZZ)

HSP 1 Score: 124 bits (310), Expect = 2.130e-34
Identity = 59/122 (48.36%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 VSFADRNLTCIDCKQPFVFTAGEQEFHAAKGFTNEPKRCPACRTARKGGAXXXXXXXXFSDRGPRSFGSDSGFGXXXXXXXGGGMRREMHSAICAECGKETQVPFVPSGARPVYCRDCYSQQ 366
            +S+ DRNLTC++C Q F+F+A +Q +HA KG+TNEPKRC +CR AR+  A         SDRGPR                      EMHS ICAECG +  VPF+P G RPVYC DC+S+Q
Sbjct:    1 MSYQDRNLTCVECGQSFIFSADDQSYHAEKGYTNEPKRCASCRDARR--ANRSNDGGFGSDRGPR----------------------EMHSVICAECGNQATVPFLPRGDRPVYCSDCFSRQ 98          
BLAST of mRNA_P-wetherbeei_contig13938.2.1 vs. uniprot
Match: A0A535DUI7_9CHLR (Zinc-binding protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535DUI7_9CHLR)

HSP 1 Score: 124 bits (310), Expect = 2.320e-34
Identity = 69/122 (56.56%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 VSFADRNLTCIDCKQPFVFTAGEQEFHAAKGFTNEPKRCPACRTARKGGAXXXXXXXXFSDRGPRSFGSDSGFGXXXXXXXGGGMRREMHSAICAECGKETQVPFVPSGARPVYCRDCYSQQ 366
            +SF DR LTC DC QPF FTA +Q++H  KG+TNEPKRCP+CR  R                  RS        XXXXXXX GG RREMH A+CA+CGK+TQVPF PSG RPVYC DC+S+Q
Sbjct:    1 MSFEDRTLTCQDCGQPFTFTADDQQYHREKGYTNEPKRCPSCRQNR------------------RSSNYXXXXXXXXXXXXYGG-RREMHDAVCAQCGKDTQVPFRPSGDRPVYCSDCFSKQ 103          
BLAST of mRNA_P-wetherbeei_contig13938.2.1 vs. uniprot
Match: A0A0S7WMH8_9CHLR (Zinc-binding protein n=2 Tax=unclassified Dehalococcoidia TaxID=1318598 RepID=A0A0S7WMH8_9CHLR)

HSP 1 Score: 123 bits (309), Expect = 2.930e-34
Identity = 58/122 (47.54%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 VSFADRNLTCIDCKQPFVFTAGEQEFHAAKGFTNEPKRCPACRTARKGGAXXXXXXXXFSDRGPRSFGSDSGFGXXXXXXXGGGMRREMHSAICAECGKETQVPFVPSGARPVYCRDCYSQQ 366
            +S+ DR LTC DC Q F F+A +Q +HA KG+TNEPKRCP+CR AR               RG R +G   G+G            R+M+ A+CA+CGK+T+VPF P G RPVYC DC+ QQ
Sbjct:    1 MSYEDRTLTCQDCGQSFTFSADDQAYHAEKGYTNEPKRCPSCRQAR---------------RGERDYGGGGGYGRSP---------RQMYPAVCAQCGKQTEVPFQPRGDRPVYCSDCFRQQ 98          
BLAST of mRNA_P-wetherbeei_contig13938.2.1 vs. uniprot
Match: A0A381STD3_9ZZZZ (zf-trcl domain-containing protein n=20 Tax=root TaxID=1 RepID=A0A381STD3_9ZZZZ)

HSP 1 Score: 123 bits (309), Expect = 3.110e-34
Identity = 58/122 (47.54%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 VSFADRNLTCIDCKQPFVFTAGEQEFHAAKGFTNEPKRCPACRTARKGGAXXXXXXXXFSDRGPRSFGSDSGFGXXXXXXXGGGMRREMHSAICAECGKETQVPFVPSGARPVYCRDCYSQQ 366
            +S+ DRNLTC++C Q F+F+A +Q +HA KG+TNEPKRCP+CR +R+            ++R    FG D G              REMH+ ICAECG E  VPF P G RPVYC DC+S+Q
Sbjct:    1 MSYQDRNLTCVECGQSFIFSADDQSYHAEKGYTNEPKRCPSCRQSRR------------ANRSSDGFGFDRG-------------PREMHTVICAECGNEATVPFRPRGDRPVYCSDCFSRQ 97          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13938.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XM27_9BURK6.980e-3653.85zf-trcl domain-containing protein n=1 Tax=Burkhold... [more]
A0A0F9HLN9_9ZZZZ1.730e-3550.00zf-trcl domain-containing protein n=1 Tax=marine s... [more]
A0A355BKG2_9FIRM4.130e-3552.10Zinc-binding protein n=1 Tax=Firmicutes bacterium ... [more]
A0A2E5F4F0_9CHLR6.410e-3550.83Zinc-binding protein n=1 Tax=Chloroflexi bacterium... [more]
A5UU44_ROSS11.160e-3451.61zf-trcl domain-containing protein n=2 Tax=Roseifle... [more]
A0A2W4LQC7_9CHLR1.300e-3449.19zf-trcl domain-containing protein n=1 Tax=Chlorofl... [more]
A0A382XVU5_9ZZZZ2.130e-3448.36zf-trcl domain-containing protein n=15 Tax=root Ta... [more]
A0A535DUI7_9CHLR2.320e-3456.56Zinc-binding protein n=1 Tax=Chloroflexi bacterium... [more]
A0A0S7WMH8_9CHLR2.930e-3447.54Zinc-binding protein n=2 Tax=unclassified Dehaloco... [more]
A0A381STD3_9ZZZZ3.110e-3447.54zf-trcl domain-containing protein n=20 Tax=root Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13938contigP-wetherbeei_contig13938:985..1350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog357808.RoseRS_1757
PFAMszf-trcl
Model size366
Max annot lvl32061|Chloroflexia
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.91e-35
EggNOG OGsCOG1278@1|root,COG1278@2|Bacteria,2G79W@200795|Chloroflexi,377DW@32061|Chloroflexia
DescriptionProbable zinc-ribbon domain
Cds size366
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.6642025-CDS-P-wetherbeei_contig13938:984..13501683186002.6642025-CDS-P-wetherbeei_contig13938:984..1350Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13938 985..1350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13938.2.1prot_P-wetherbeei_contig13938.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13938 985..1350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13938.2.1

>prot_P-wetherbeei_contig13938.2.1 ID=prot_P-wetherbeei_contig13938.2.1|Name=mRNA_P-wetherbeei_contig13938.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
VSFADRNLTCIDCKQPFVFTAGEQEFHAAKGFTNEPKRCPACRTARKGGA
SGGGGGGGFSDRGPRSFGSDSGFGGGGGGGFGGGMRREMHSAICAECGKE
TQVPFVPSGARPVYCRDCYSQQ
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mRNA from alignment at P-wetherbeei_contig13938:985..1350-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13938.2.1 ID=mRNA_P-wetherbeei_contig13938.2.1|Name=mRNA_P-wetherbeei_contig13938.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig13938:985..1350- (Phaeothamnion wetherbeei SAG_119_79)
GTGTCCTTCGCGGATCGTAATTTAACTTGCATTGATTGCAAGCAACCCTT TGTCTTCACCGCTGGCGAGCAAGAATTCCATGCTGCCAAAGGTTTTACCA ACGAGCCCAAGCGTTGCCCGGCTTGCCGTACTGCCCGTAAGGGTGGCGCG AGCGGTGGCGGCGGTGGCGGCGGTTTTTCAGACCGTGGTCCCCGTAGCTT TGGTTCCGACTCTGGCTTTGGCGGCGGTGGCGGCGGAGGTTTCGGGGGCG GAATGCGTCGCGAGATGCACAGCGCCATATGCGCCGAGTGCGGTAAGGAA ACCCAGGTCCCATTCGTTCCCAGCGGGGCTCGCCCCGTATACTGCCGCGA TTGCTACTCGCAGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13938:985..1350-

>mRNA_P-wetherbeei_contig13938.2.1 ID=mRNA_P-wetherbeei_contig13938.2.1|Name=mRNA_P-wetherbeei_contig13938.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig13938:985..1350- (Phaeothamnion wetherbeei SAG_119_79)
GTGTCCTTCGCGGATCGTAATTTAACTTGCATTGATTGCAAGCAACCCTT
TGTCTTCACCGCTGGCGAGCAAGAATTCCATGCTGCCAAAGGTTTTACCA
ACGAGCCCAAGCGTTGCCCGGCTTGCCGTACTGCCCGTAAGGGTGGCGCG
AGCGGTGGCGGCGGTGGCGGCGGTTTTTCAGACCGTGGTCCCCGTAGCTT
TGGTTCCGACTCTGGCTTTGGCGGCGGTGGCGGCGGAGGTTTCGGGGGCG
GAATGCGTCGCGAGATGCACAGCGCCATATGCGCCGAGTGCGGTAAGGAA
ACCCAGGTCCCATTCGTTCCCAGCGGGGCTCGCCCCGTATACTGCCGCGA
TTGCTACTCGCAGCAG
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