prot_P-wetherbeei_contig13937.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig13937.1.1
Unique Nameprot_P-wetherbeei_contig13937.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length146
Homology
BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 1.390e-74
Identity = 114/146 (78.08%), Postives = 134/146 (91.78%), Query Frame = 0
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 146
            MR ++DGLDVFFPYD++Y EQY+YM+ELKR+LDAKGHCLLEMPTGTGKTVCLISLITSYQF+HPE+GK IYCTRTVPEM+KC+EELKRV+ YR  +L  E + +LALCLSSRRNLCI+ERV+ ESDREAVD ACR+MTASWVR++A
Sbjct:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA 146          
BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 245 bits (626), Expect = 1.550e-73
Identity = 116/145 (80.00%), Postives = 133/145 (91.72%), Query Frame = 0
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQR 145
            +RF++DGLD+FFPYD LY+EQY YM+ELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQF+HPE+GK IYCTRTVPEMVKCVEE+++V+ YR   + AE   +LA+CLSSRRNLCI+ERVM ESDREAVDSACR+MTASWVRQR
Sbjct:    2 VRFDLDGLDLFFPYDRLYEEQYNYMLELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMVKCVEEVRKVIDYRVKCIGAEGGKVLAVCLSSRRNLCIHERVMEESDREAVDSACRSMTASWVRQR 146          
BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A482RW16_9ARCH (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW16_9ARCH)

HSP 1 Score: 222 bits (565), Expect = 1.750e-69
Identity = 103/146 (70.55%), Postives = 123/146 (84.25%), Query Frame = 0
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 146
            M+F ++GL+VFFPYDY+YKEQY+YM+ LKRA+DAKGH LLEMPTGTGKTVCLISLITSYQF +P+ GK IYCTRTVPEM KC++E+K+V+ YR   L  E   +LALCLSSRRN+CI+ RV  ESDRE VD+ CR+MTASWVR  A
Sbjct:   22 MKFNLEGLEVFFPYDYMYKEQYDYMLNLKRAIDAKGHALLEMPTGTGKTVCLISLITSYQFQYPQTGKLIYCTRTVPEMAKCMDEIKKVIEYRQKLLGPEGGRVLALCLSSRRNMCIHPRVQEESDRETVDTKCRDMTASWVRASA 167          
BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A7R9U4D1_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4D1_9STRA)

HSP 1 Score: 230 bits (586), Expect = 7.920e-68
Identity = 110/146 (75.34%), Postives = 131/146 (89.73%), Query Frame = 0
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 146
            MRF ++ +DVFFPY  +Y+EQ++YMVELKRAL+A GH  LEMPTGTGKTVCL+SLITS QF+ PEMGKFIYCTRTVPEMVKCVEELKRV++YRA  + AE + ILALCLSSRRN+CI++RV+ ESDREAVD+ACR+MTASWVR+RA
Sbjct:   45 MRFRLEDVDVFFPYPSVYREQFDYMVELKRALEAPGHAALEMPTGTGKTVCLMSLITSVQFARPEMGKFIYCTRTVPEMVKCVEELKRVVNYRAECVGAEGRKILALCLSSRRNMCIHDRVLEESDREAVDAACRSMTASWVRKRA 190          
BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 223 bits (567), Expect = 2.300e-65
Identity = 105/146 (71.92%), Postives = 122/146 (83.56%), Query Frame = 0
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 146
            M F +  + V+FPYDY Y EQY YM ELK  LDAKGHCLLEMPTGTGKTVCLI+LIT+YQ+ HPE+GK IYCTRTVPEMVKCVEE+KRV+ YR  +L      +LALCLSSRRNLCI++RV+ ++DREAVD ACR+MTASWVRQRA
Sbjct:    1 MIFTLGDITVWFPYDYCYPEQYAYMSELKTTLDAKGHCLLEMPTGTGKTVCLIALITAYQYQHPEVGKLIYCTRTVPEMVKCVEEIKRVIRYREEQLGPAGSKVLALCLSSRRNLCIHQRVLEDADREAVDGACRDMTASWVRQRA 146          
BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A7R9TIP8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TIP8_9VIRI)

HSP 1 Score: 201 bits (511), Expect = 9.980e-64
Identity = 98/148 (66.22%), Postives = 118/148 (79.73%), Query Frame = 0
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMR--ESDREAVDSACRNMTASWVRQRA 146
            M+F +DG+DV+FPYDY+Y EQYEYM+ELKR LDAKGHCLLEMPTGTGKT+ L+SLITSYQ ++P +GK +YCTRTVPEM K + ELK + S RA +L    K  LAL LSSRRN+CINE V+    +DRE+VDS CR +TASWVR  A
Sbjct:    1 MKFNLDGMDVYFPYDYIYPEQYEYMLELKRTLDAKGHCLLEMPTGTGKTITLLSLITSYQVANPGVGKLVYCTRTVPEMEKVMAELKHLHSMRAHDLGERAKNFLALVLSSRRNMCINESVLAGAATDRESVDSRCRRLTASWVRDSA 148          
BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A7S1CFN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFN5_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.930e-63
Identity = 101/155 (65.16%), Postives = 119/155 (76.77%), Query Frame = 0
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALD----------AKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQR 145
            M+F +DGL V+FPY Y+Y EQ +YM ELKRALD          AKGHC+LEMPTGTGKTV L+SLITSYQ +HP +GK +YCTRTVPEM KCV ELKRV+ YR  EL  E   +LA CLSSRRN+CI+ERVM E+DRE VD+ACR  TA WVR++
Sbjct:    1 MKFLLDGLQVYFPYPYVYSEQLKYMRELKRALDVAFAPGVSTTAKGHCMLEMPTGTGKTVALLSLITSYQLAHPTVGKLMYCTRTVPEMTKCVGELKRVIEYRVKELGPEGGNVLACCLSSRRNMCIHERVMAEADREQVDAACRKRTAPWVREK 155          
BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A7S0S086_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S086_9CHLO)

HSP 1 Score: 200 bits (509), Expect = 1.590e-61
Identity = 92/146 (63.01%), Postives = 120/146 (82.19%), Query Frame = 0
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 146
            MRF+++GL V+FPY+Y+Y EQY YM+ELKR+LDA+GH LLEMPTGTGKT+ L+SLITSYQ +HPE+GK +YCTRTVPEM K + EL+ +++YR+  L  +  PI+AL LSSR+NLC++  V  E  RE+VDS CR +TASWVR+RA
Sbjct:    1 MRFKLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHSLLEMPTGTGKTITLLSLITSYQLAHPEVGKLVYCTRTVPEMEKVLAELQELIAYRSKYLGPDAAPIMALGLSSRKNLCVHPTVAEEGSRESVDSGCRKLTASWVRERA 146          
BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A7S2WST0_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WST0_9STRA)

HSP 1 Score: 211 bits (536), Expect = 2.190e-61
Identity = 101/147 (68.71%), Postives = 119/147 (80.95%), Query Frame = 0
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKP-ILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 146
            MRF +DGLDVFFPY  +Y EQY+YM+ELKRALDAKG CLLEMPTGTGKTV L++LITSYQF+HPE GK +YCTRTVPEM KCVEEL+RV+++R   L   D P  L +CLS+RRN+CIN +V++ SDRE VDS CR   A WVRQ A
Sbjct:    1 MRFNLDGLDVFFPYPTIYPEQYDYMLELKRALDAKGSCLLEMPTGTGKTVSLLALITSYQFAHPETGKLVYCTRTVPEMTKCVEELERVINHRTELLAGTDAPPFLGVCLSARRNMCINPQVIQNSDREQVDSLCRKKIAPWVRQNA 147          
BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Match: A0A835XSX7_9CHLO (Helicase ATP-binding domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XSX7_9CHLO)

HSP 1 Score: 199 bits (505), Expect = 2.450e-61
Identity = 93/146 (63.70%), Postives = 117/146 (80.14%), Query Frame = 0
Query:    1 MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAEDKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA 146
            M+F ++GL V+FPY+Y+Y EQY YM+ELKR+LDA+GHCLLEMPTGTGKT+ L+SLITSYQ +H E+GK IYCTRTVPEM K + EL  ++SYR+  L      ILAL LSSR+NLC++ RV  E  RE+VD+ CR +TASWVR+RA
Sbjct:    1 MKFNLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHCLLEMPTGTGKTITLLSLITSYQLAHKEVGKLIYCTRTVPEMEKVLSELSELVSYRSQHLPQGAGSILALGLSSRKNLCVHPRVAEEGSRESVDAGCRRLTASWVRERA 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13937.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI1.390e-7478.08General transcription and DNA repair factor IIH he... [more]
K8YZX4_NANGC1.550e-7380.00General transcription and DNA repair factor IIH he... [more]
A0A482RW16_9ARCH1.750e-6970.55Helicase ATP-binding domain-containing protein (Fr... [more]
A0A7R9U4D1_9STRA7.920e-6875.34General transcription and DNA repair factor IIH he... [more]
A0A836CJZ4_9STRA2.300e-6571.92General transcription and DNA repair factor IIH he... [more]
A0A7R9TIP8_9VIRI9.980e-6466.22Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S1CFN5_9STRA1.930e-6365.16Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0S086_9CHLO1.590e-6163.01Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7S2WST0_9STRA2.190e-6168.71General transcription and DNA repair factor IIH he... [more]
A0A835XSX7_9CHLO2.450e-6163.70Helicase ATP-binding domain-containing protein n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006554Helicase-like, DEXD box c2 typeSMARTSM00488deadxpdcoord: 8..145
e-value: 1.3E-8
score: -5.6
IPR006935Helicase/UvrB, N-terminalPFAMPF04851ResIIIcoord: 19..70
e-value: 5.3E-6
score: 26.5
IPR010614DEAD2PFAMPF06733DEAD_2coord: 71..144
e-value: 2.2E-16
score: 60.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 16..145
e-value: 1.6E-24
score: 88.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..145
IPR001945RAD3/XPD familyPANTHERPTHR11472:SF1GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPDcoord: 1..145
IPR045028Helicase superfamily 1/2, DinG/Rad3-likePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 1..145
IPR014013Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typePROSITEPS51193HELICASE_ATP_BIND_2coord: 7..146
score: 19.738747

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13937contigP-wetherbeei_contig13937:920..1602 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13937.1.1mRNA_P-wetherbeei_contig13937.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig13937 920..1602 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig13937.1.1 ID=prot_P-wetherbeei_contig13937.1.1|Name=mRNA_P-wetherbeei_contig13937.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MRFEIDGLDVFFPYDYLYKEQYEYMVELKRALDAKGHCLLEMPTGTGKTV
CLISLITSYQFSHPEMGKFIYCTRTVPEMVKCVEELKRVMSYRASELRAE
DKPILALCLSSRRNLCINERVMRESDREAVDSACRNMTASWVRQRA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006554Helicase-like_DEXD_c2
IPR006935Helicase/UvrB_N
IPR010614DEAD_2
IPR027417P-loop_NTPase
IPR001945RAD3/XPD
IPR045028DinG/Rad3-like
IPR014013Helic_SF1/SF2_ATP-bd_DinG/Rad3