mRNA_P-wetherbeei_contig1392.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1392.2.1
Unique NamemRNA_P-wetherbeei_contig1392.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1392.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1392contigP-wetherbeei_contig1392:3040..3508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size274
Hectar predicted targeting categorysignal peptide
Exons2
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.8634431-CDS-P-wetherbeei_contig1392:3039..31221683186001.8634431-CDS-P-wetherbeei_contig1392:3039..3122Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1392 3040..3122 -
1683186001.8739383-CDS-P-wetherbeei_contig1392:3319..33771683186001.8739383-CDS-P-wetherbeei_contig1392:3319..3377Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1392 3320..3377 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186001.882749-UTR-P-wetherbeei_contig1392:3377..35081683186001.882749-UTR-P-wetherbeei_contig1392:3377..3508Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1392 3378..3508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1392.2.1prot_P-wetherbeei_contig1392.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1392 3040..3377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1392.2.1

>prot_P-wetherbeei_contig1392.2.1 ID=prot_P-wetherbeei_contig1392.2.1|Name=mRNA_P-wetherbeei_contig1392.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
MYDCLVIVAIASTAAILGEVVTHKMVYGKDAYRTLVRQTLRIYNDLV
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mRNA from alignment at P-wetherbeei_contig1392:3040..3508-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1392.2.1 ID=mRNA_P-wetherbeei_contig1392.2.1|Name=mRNA_P-wetherbeei_contig1392.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=469bp|location=Sequence derived from alignment at P-wetherbeei_contig1392:3040..3508- (Phaeothamnion wetherbeei SAG_119_79)
GTGCATTTCTACGGCCTCGGACGTTGAAGTAGCTAAAAAGCTAGGCCTCC
TGTATTCCAGAGCACCCAAATTGAAAAGAGGACCTTCCTTATCCTCTCAA
AGCGCTTCTCTCTTCCCGCTGGAGCAGAAAGATGTATGACTGCCTTGTCA
TAGTTGCAATCGCGTCCACAGCCGCAATTCTTGGGGAAGGTGAGCTTGCG
GGCCAACAAAAGTTCGGCAGTTGGTGTCACGTCCTTCGGTGTCGTCTTCT
AGGCCGCCTGCTCGGTTGTCGGTCCCTCCATCAGATTTAGTTCGTTTCAA
GTGAGATGCGCCTTCAGCCGCTTCGCCTCCGTCTGTCAAATTCCCTCTCT
TCTCTTTTCCCTTCCTCCGTTCTGTCCCCCGAAAAGTTGTTACGCACAAG
ATGGTGTACGGAAAGGATGCGTACCGGACGTTAGTTAGGCAGACGTTGAG
AATCTACAATGATCTGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1392:3040..3508-

>mRNA_P-wetherbeei_contig1392.2.1 ID=mRNA_P-wetherbeei_contig1392.2.1|Name=mRNA_P-wetherbeei_contig1392.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig1392:3040..3508- (Phaeothamnion wetherbeei SAG_119_79)
ATGTATGACTGCCTTGTCATAGTTGCAATCGCGTCCACAGCCGCAATTCT
TGGGGAAGTTGTTACGCACAAGATGGTGTACGGAAAGGATGCGTACCGGA
CGTTAGTTAGGCAGACGTTGAGAATCTACAATGATCTGGTA
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