mRNA_P-wetherbeei_contig1389.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1389.1.1
Unique NamemRNA_P-wetherbeei_contig1389.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1389.1.1 vs. uniprot
Match: A0A835ZFJ3_9STRA (TOG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFJ3_9STRA)

HSP 1 Score: 184 bits (466), Expect = 3.420e-51
Identity = 79/126 (62.70%), Postives = 95/126 (75.40%), Query Frame = 1
Query:   52 FEHTCQFCGVHDPDFTEEALDLHYWQHCAMLMGCNECGQVVEVVALTEHLLDECPQRAQYVQCPVSGMAVRRADMAGWTASKSCRPPGPAGPGSACPLCFNDVAAAADEDSWKSHLMESCPRNPRR 429
            ++ TCQFCG  D +FTEE LDLHYWQ C MLMGC ECGQV+E+ AL EHLLDEC +  +Y +C VSGMAVRR  +  W  S  CRPPG  G GS CPLCF D+ AA DE+ W++HL+E+CP+NPRR
Sbjct:  759 YQFTCQFCGKFDAEFTEERLDLHYWQACPMLMGCEECGQVIEISALPEHLLDECQEAGKYEECEVSGMAVRREALTEWQRSAHCRPPGRGGIGSVCPLCFKDLGAADDEEVWRAHLIEACPKNPRR 884          
BLAST of mRNA_P-wetherbeei_contig1389.1.1 vs. uniprot
Match: D7FPV5_ECTSI (TOG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV5_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 3.870e-50
Identity = 76/135 (56.30%), Postives = 99/135 (73.33%), Query Frame = 1
Query:   25 EEEEYDSTDFEHTCQFCGVHDPDFTEEALDLHYWQHCAMLMGCNECGQVVEVVALTEHLLDECPQRAQYVQCPVSGMAVRRADMAGWTASKSCRPPGPAGPGSACPLCFNDVAAAADEDSWKSHLMESCPRNPRR 429
            E EE D  D  +TCQFCG +DP FT+E LD+HYWQ+C +LM C ECGQV+E+ ++ EHLL+EC  R  Y +C +S +A+R  D+  W  SKSC+PPG  GPGS CPLCF DV +A DE+ W++HL++ C RNPRR
Sbjct:  724 ESEEMDD-DVSYTCQFCGKYDPSFTDEKLDMHYWQNCPLLMSCEECGQVIEISSIPEHLLEECQNRENYTECEISHLAIRIEDLDKWQRSKSCKPPGKGGPGSTCPLCFEDVGSADDEEYWRAHLIDRCTRNPRR 857          
BLAST of mRNA_P-wetherbeei_contig1389.1.1 vs. uniprot
Match: A0A7S4D8I8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8I8_HETAK)

HSP 1 Score: 144 bits (364), Expect = 8.720e-42
Identity = 62/123 (50.41%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   58 HTCQFCGVHDPDFTEEALDLHYWQHCAMLMGCNECGQVVEVVALTEHLLDECPQRAQYVQCPVSGMAVRRADMAGWTASKSCRPPGPAGPGSACPLCFNDVAAAADEDSWKSHLMESCPRNPR 426
            HTCQFCG  DPDF EEALDLHYWQ C MLM C EC QV+E+  L EH L EC  + +Y++C VSG  V + ++  W AS  CRP    G    C LC   V     E+ W+ HL   C +NPR
Sbjct:   11 HTCQFCGARDPDFDEEALDLHYWQDCVMLMSCRECSQVIEIACLAEHYLTECEFKDKYIECDVSGEVVLKDELKEWQASSECRPAADDGGRPRCLLCHRGVGPPEGEEGWRRHLTRDCSQNPR 133          
BLAST of mRNA_P-wetherbeei_contig1389.1.1 vs. uniprot
Match: A0A6P6NAA2_CARAU (LOW QUALITY PROTEIN: centrosomal protein of 104 kDa-like n=3 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6NAA2_CARAU)

HSP 1 Score: 130 bits (328), Expect = 2.020e-32
Identity = 62/129 (48.06%), Postives = 80/129 (62.02%), Query Frame = 1
Query:   55 EHTCQFCGVHDPDFTEEALDLHYWQHCAMLMGCNECGQVVEVVALTEHLLDECPQRAQYVQCPVSGMAVRRADMAGWTASKSCRPPGPAGPGSACPLCFNDVAAAADEDSWKSHLM--ESCPRNPRRQA 435
            ++ C FCG  D  FTE+ LDLHYW+HC ML  C +C QVVE+ +LTEHLL EC QRA + QCP+   A+ R ++     S SC PP      + CPLC  +  +   E+ WKSHLM  E C +N RR+A
Sbjct:  759 DNLCIFCGERDESFTEDGLDLHYWKHCPMLQRCLQCRQVVEIASLTEHLLTECEQRANFTQCPLCSEALTRDELTEHAQSASCNPPASGENCNHCPLCHENFTSG--EEVWKSHLMGIEGCKQNSRRRA 885          
BLAST of mRNA_P-wetherbeei_contig1389.1.1 vs. uniprot
Match: K8YQ12_NANGC (AB hydrolase-1 domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQ12_NANGC)

HSP 1 Score: 125 bits (315), Expect = 3.840e-31
Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   55 EHTCQFCGVHDPDFTEEALDLHYWQHCAMLMGCNECGQVVEVVALTEHLLDECPQ-RAQYVQCPVSGMAVRRADMAGWTASKSCRPPGPAGPGSA----CPLCFNDVAAAADEDSWKSHLMESCPRNPRRQ 432
            E TCQFCG+H+P FTEEALD HY+  C +LM C ECGQV+E+  L EHLL+EC + R +Y  CP SG+AVR+     W            G G+     CPLCF  +  A++E   ++H +  CPRN RR+
Sbjct:  374 EKTCQFCGLHNPGFTEEALDRHYFTSCPLLMRCRECGQVIEIFGLPEHLLEECEEARGEYEACPASGLAVRKDQREAWRMGPGAYFAEEGGKGAGTKVVCPLCFYAIEPASEE-GVRAHYITRCPRNARRE 503          
BLAST of mRNA_P-wetherbeei_contig1389.1.1 vs. uniprot
Match: A0A553PXB1_9TELE (Uncharacterized protein (Fragment) n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553PXB1_9TELE)

HSP 1 Score: 125 bits (314), Expect = 1.510e-30
Identity = 62/130 (47.69%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   49 DFEHTCQFCGVHDPDFTEEALDLHYWQHCAMLMGCNECGQVVEVVALTEHLLDECPQRAQYVQCPVSGMAVRRADMAGWTASKSCRPPGPAGPGSACPLCFNDVAAAADEDSWKSHLM--ESCPRNPRRQ 432
            D +  C FCG  D  F EE LDLHYW+HC ML  C +CGQVVE+ +LTEHLL EC +R  + QCP+   A+ R  +     S +C P    G  S CPLC  + A+   E+ WKSHLM  E C +N RR+
Sbjct:  648 DLDKLCIFCGERDESFNEEGLDLHYWKHCPMLQRCLQCGQVVEIASLTEHLLTECERRTAFSQCPLCSEALLRDKLTEHAHSSACNPS--IGNCSHCPLCHENFASG--EEGWKSHLMGPEGCKKNSRRR 773          
BLAST of mRNA_P-wetherbeei_contig1389.1.1 vs. uniprot
Match: A0A4D9CPN0_9STRA (UVR domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPN0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.910e-30
Identity = 61/129 (47.29%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   61 TCQFCGVHDPDFTEEALDLHYWQHCAMLMGCNECGQVVEVVALTEHLLDECPQ-RAQYVQCPVSGMAVRRADMAGWTASKSCRPPGPAGPGSA----CPLCFNDVAAAADEDSWKSHLMESCPRNPRRQ 432
            TCQFCG+HDP FTEEALD HY+  C +LM C ECGQV+E+  L EHLL+EC + R +Y  C  SG+AVRR     W            G G+     CPLCF  +  A++E   ++H +  CPRN RR+
Sbjct:  942 TCQFCGLHDPGFTEEALDRHYFTSCPLLMRCRECGQVIEIFGLPEHLLEECEEARGEYEACRASGLAVRRDQWEAWRTGPGAYFAEEGGKGAGTKVVCPLCFYAIEPASEE-GVRAHYITRCPRNARRE 1069          
BLAST of mRNA_P-wetherbeei_contig1389.1.1 vs. uniprot
Match: A0A2R5GHB4_9STRA (Centrosomal protein of 104 kDa n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHB4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 6.440e-29
Identity = 58/142 (40.85%), Postives = 80/142 (56.34%), Query Frame = 1
Query:   22 AEEEEYDSTDFEH---TCQFCGVHDPDFTEEALDLHYWQHCAMLMGCNECGQVVEVVALTEHLLDECPQRAQYVQCPVSGMAVRRADMAGWTASKSCRPPGPAGPGSACPLCFNDVAAAADEDSWKSHLM--ESCPRNPRRQ 432
            A E++ D   +E    TCQFCG HDP+FT++ALD+HYW+ C ML  C +C QV+EV  L +HLL+EC  +  + +CP  G A+            SCRP       + CPLC  DV     ED W+ H++    C +NPR +
Sbjct:  890 AVEDDDDDVSYEEEPFTCQFCGRHDPEFTDDALDIHYWKECPMLTSCLQCEQVIEVAMLNDHLLNECEMKHNHERCPRCGEAIAAQYFNQHVKRASCRPSQSVSKANRCPLCHEDVKPG--EDGWREHILIEPGCNKNPRTE 1029          
BLAST of mRNA_P-wetherbeei_contig1389.1.1 vs. uniprot
Match: A0A0R3WCY2_TAEAS (Uncharacterized protein n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A0R3WCY2_TAEAS)

HSP 1 Score: 112 bits (281), Expect = 3.840e-26
Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = 1
Query:   61 TCQFCGVHDPDFTEEALDLHYWQHCAMLMGCNECGQVVEVVALTEHLLDECPQRAQ---YVQCPVSGMAVRRADMAGWTASKSCRPPGPAGPGSACPLCFNDVA-----AAADEDSWKSHLMESCPRNPR 426
            TC FCG  + DFTEEALD+HYW+ C ML  C+ C QVVEV  LTEHLL+ECP+  +   Y +C V   A+  A      + KS        P   CPLC  D+A      + +ED+W+ HL++ C +N R
Sbjct:  490 TCIFCGEQNDDFTEEALDMHYWKACPMLRRCSNCKQVVEVAGLTEHLLNECPKSGKLGGYRRCEVCSEAIPNATFITHNSCKSAP-----NPSLRCPLCHTDLADDGVQGSNNEDAWRMHLLKECRQNSR 614          
BLAST of mRNA_P-wetherbeei_contig1389.1.1 vs. uniprot
Match: A0A7S3F1X5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F1X5_9EUKA)

HSP 1 Score: 107 bits (266), Expect = 5.220e-26
Identity = 55/123 (44.72%), Postives = 66/123 (53.66%), Query Frame = 1
Query:   61 TCQFCGVHDPDFTEEALDLHYWQHCAMLMGCNECGQVVEVVALTEHLLDECPQRAQYVQCPVSGMAVRRADMAGWTASKSCRPPGPAGPGSACPLCFNDVAAAADEDSWKSHLMESCPRNPRR 429
            TCQFCG HDP F EE +DLH+W+ C MLM C++CGQVVEV AL EHL+ EC Q   +   P  G+A   AD  G                  CPLC   +    D  + K H+M  C  NPRR
Sbjct:  116 TCQFCGRHDPSFDEETMDLHFWKDCPMLMPCDQCGQVVEVAALAEHLVTECDQSQDFRYPPPLGVA---ADFTG------------------CPLCGEPLPG--DPAACKDHIMHRCGGNPRR 215          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1389.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFJ3_9STRA3.420e-5162.70TOG domain-containing protein n=1 Tax=Tribonema mi... [more]
D7FPV5_ECTSI3.870e-5056.30TOG domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4D8I8_HETAK8.720e-4250.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6P6NAA2_CARAU2.020e-3248.06LOW QUALITY PROTEIN: centrosomal protein of 104 kD... [more]
K8YQ12_NANGC3.840e-3146.56AB hydrolase-1 domain-containing protein n=1 Tax=N... [more]
A0A553PXB1_9TELE1.510e-3047.69Uncharacterized protein (Fragment) n=1 Tax=Danione... [more]
A0A4D9CPN0_9STRA2.910e-3047.29UVR domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A2R5GHB4_9STRA6.440e-2940.85Centrosomal protein of 104 kDa n=1 Tax=Hondaea fer... [more]
A0A0R3WCY2_TAEAS3.840e-2643.85Uncharacterized protein n=1 Tax=Taenia asiatica Ta... [more]
A0A7S3F1X5_9EUKA5.220e-2644.72Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1389contigP-wetherbeei_contig1389:381..1090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FPV5
PFAMsUVR,XRCC1_N
Model size444
Max annot lvl2759|Eukaryota
KEGG koko:K16458
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.35e-51
EggNOG OGsKOG4825@1|root,KOG4825@2759|Eukaryota
Descriptionthienylcyclohexylpiperidine binding
Cds size444
COG categoryM
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186000.5250347-CDS-P-wetherbeei_contig1389:380..5481683186000.5250347-CDS-P-wetherbeei_contig1389:380..548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1389 381..548 +
1683186000.5352566-CDS-P-wetherbeei_contig1389:814..10901683186000.5352566-CDS-P-wetherbeei_contig1389:814..1090Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1389 815..1090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1389.1.1prot_P-wetherbeei_contig1389.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1389 381..1090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1389.1.1

>prot_P-wetherbeei_contig1389.1.1 ID=prot_P-wetherbeei_contig1389.1.1|Name=mRNA_P-wetherbeei_contig1389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
EAAAASEAEEEEYDSTDFEHTCQFCGVHDPDFTEEALDLHYWQHCAMLMG
CNECGQVVEVVALTEHLLDECPQRAQYVQCPVSGMAVRRADMAGWTASKS
CRPPGPAGPGSACPLCFNDVAAAADEDSWKSHLMESCPRNPRRQAAP*
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mRNA from alignment at P-wetherbeei_contig1389:381..1090+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1389.1.1 ID=mRNA_P-wetherbeei_contig1389.1.1|Name=mRNA_P-wetherbeei_contig1389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=710bp|location=Sequence derived from alignment at P-wetherbeei_contig1389:381..1090+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCGGCGGCGGCGAGCGAGGCGGAGGAAGAGGAATACGACTCAACGGA TTTCGAGCACACGTGCCAGTTCTGCGGCGTGCACGACCCGGACTTCACGG AGGAGGCGCTCGACCTCCACTACTGGCAGCACTGCGCCATGCTCATGGGC TGCAACGAGTGCGGGCAGGTCGGTCGGGTGGCCTCTAGGGTTCTTGAAGG AAGCCGCTATGGGTGCGGCGACGGCGGCCGATGTGAATGTGGATTTTATG GGAATGCTTCATCCGGTTTTGTGAGCGTTTTTTTTTTACGCGTTTTCTTG GCTGCTTGACCTCTTTCTTACCTTGCCTTCTGCGGAATGTTAAAATCATT ATCTTTACTCACTTTTGGTTTCCTGCCACCCATTCCACCCTCCCTCTTTC CTACCGTCTCTTCGCCTCTGCCTTGTCCTGCCAGGTGGTGGAGGTGGTGG CGCTGACAGAACACCTGTTGGACGAGTGCCCGCAGCGGGCGCAGTACGTG CAGTGCCCCGTTAGCGGCATGGCCGTCCGCCGGGCGGACATGGCAGGCTG GACGGCCTCCAAGAGCTGCCGTCCGCCGGGCCCCGCCGGCCCCGGCAGCG CCTGCCCGCTCTGCTTCAACGACGTCGCCGCGGCGGCCGACGAGGATTCG TGGAAGTCGCACCTCATGGAGTCGTGCCCGCGGAACCCTCGGCGGCAGGC GGCGCCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1389:381..1090+

>mRNA_P-wetherbeei_contig1389.1.1 ID=mRNA_P-wetherbeei_contig1389.1.1|Name=mRNA_P-wetherbeei_contig1389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig1389:381..1090+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCGGCGGCGGCGAGCGAGGCGGAGGAAGAGGAATACGACTCAACGGA
TTTCGAGCACACGTGCCAGTTCTGCGGCGTGCACGACCCGGACTTCACGG
AGGAGGCGCTCGACCTCCACTACTGGCAGCACTGCGCCATGCTCATGGGC
TGCAACGAGTGCGGGCAGGTGGTGGAGGTGGTGGCGCTGACAGAACACCT
GTTGGACGAGTGCCCGCAGCGGGCGCAGTACGTGCAGTGCCCCGTTAGCG
GCATGGCCGTCCGCCGGGCGGACATGGCAGGCTGGACGGCCTCCAAGAGC
TGCCGTCCGCCGGGCCCCGCCGGCCCCGGCAGCGCCTGCCCGCTCTGCTT
CAACGACGTCGCCGCGGCGGCCGACGAGGATTCGTGGAAGTCGCACCTCA
TGGAGTCGTGCCCGCGGAACCCTCGGCGGCAGGCGGCGCCGTAA
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