mRNA_P-wetherbeei_contig1387.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1387.1.2
Unique NamemRNA_P-wetherbeei_contig1387.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1387.1.2 vs. uniprot
Match: D7FJG0_ECTSI (Isochorismatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG0_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.430e-58
Identity = 109/207 (52.66%), Postives = 146/207 (70.53%), Query Frame = 2
Query: 1427 KKSVDYSVGEMAAA-AARTIGKLRPPTTSLFVCDVQERFREKIWQMHSVIPAAKFMLDVARTLDVPCVVTEQYPRALGRTVAELGIGESASSPLPHLAVFEKKLFSMCTDDVLTHLRGFGAGRRDVLLLGIEGHVCVLQTCLDLVEHGYTVHLVVDAISSQRPLDRAVGIQRMQQAGALVTTVEAAAFELMGSADHPNFKAISQLAK 2044
            + S D  V EMA A A+R +GK+ P +T  F CDVQERFR+ I  M +VI  AKFMLDV++ L+VPC+VTEQYP+AL  TV EL +G+       ++ +FEKKLFSMCT +V   L+     R+D +L GIE HVCV QTCLDL++ GY VH+V D +SSQ+P DRAV +QRMQQ+GA +T+ E   F+L+ +A++  F+A+S L K
Sbjct:   53 RASSDIPVVEMAVATASRRLGKIFPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQI--NVPIFEKKLFSMCTKEVEEELKKL-PDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVK 256          
BLAST of mRNA_P-wetherbeei_contig1387.1.2 vs. uniprot
Match: A0A6H5KEX0_9PHAE (Isochorismatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX0_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 2.120e-58
Identity = 104/195 (53.33%), Postives = 139/195 (71.28%), Query Frame = 2
Query: 1460 AAAAARTIGKLRPPTTSLFVCDVQERFREKIWQMHSVIPAAKFMLDVARTLDVPCVVTEQYPRALGRTVAELGIGESASSPLPHLAVFEKKLFSMCTDDVLTHLRGFGAGRRDVLLLGIEGHVCVLQTCLDLVEHGYTVHLVVDAISSQRPLDRAVGIQRMQQAGALVTTVEAAAFELMGSADHPNFKAISQLAK 2044
            AA A+R +GK+ P +T  F CDVQERFR+ I  M +VI  AKFMLDV++ L+VPC+VTEQYP+AL  TV EL +G        ++ +FEKKLFSMCT +V   L+     R+D +L GIE HVCV QTCLDL++ GY VH+V D +SSQ+P DRAV +QRMQQ+GA +T+ E   F+L+ +A++  F+A+S L K
Sbjct:    3 AATASRRLGKILPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGNGPDQI--NVPIFEKKLFSMCTKEVEEELKKL-PDRKDAVLFGIEAHVCVTQTCLDLLDLGYEVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVK 194          
BLAST of mRNA_P-wetherbeei_contig1387.1.2 vs. uniprot
Match: A0A6U1N7F4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1N7F4_9STRA)

HSP 1 Score: 193 bits (491), Expect = 9.360e-54
Identity = 100/206 (48.54%), Postives = 128/206 (62.14%), Query Frame = 2
Query: 1475 RTIGKLRPPTTSLFVCDVQERFREKIWQMHSVIPAAKFMLDVARTLDVPCVVTEQYPRALGRTVAELGIGESASSPL----------------PHLAVFEKKLFSMCTDDVLTHLRGFGAGRRDVLLLGIEGHVCVLQTCLDLVEHGYTVHLVVDAISSQRPLDRAVGIQRMQQAGALVTTVEAAAFELMGSADHPNFKAISQLAK 2044
            +++G+LRP +T   +CD+QERFREKIW+  +V   AK++++VA  L+V  V T QY +ALG  V E+ +  S   P                 P   V++KKLFSMCTD V   L   G G   V+L GIE HVC+ QTCLDL+  G  VH+V D  SSQRP DR V +QRM +AGA VTT E+A FEL+G+A HP  KAIS L K
Sbjct:    3 KSVGRLRPQSTIFLLCDIQERFREKIWKFGTVANTAKYLVEVAGELNVKVVATTQYAKALGAIVPEINLPVSTEVPAQDEEGTDTKPXXXXDTPAAVVYDKKLFSMCTDQVNAELEAAGEGLTSVVLFGIETHVCIQQTCLDLLSRGLEVHVVADGCSSQRPYDRGVALQRMARAGAFVTTAESAVFELLGTAQHPKLKAISNLTK 208          
BLAST of mRNA_P-wetherbeei_contig1387.1.2 vs. uniprot
Match: A0A6U3TC81_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TC81_9STRA)

HSP 1 Score: 190 bits (483), Expect = 7.730e-53
Identity = 95/199 (47.74%), Postives = 136/199 (68.34%), Query Frame = 2
Query: 1457 MAAAAARTIGKLRPPTTSLFVCDVQERFREKIWQMHSVIPAAKFMLDVARTLDVPCVVTEQYPRALGRTVAE-LGIGESASSPLPHLAVFEKKLFSMCTDDVLTHLRGFGAGRR-DVLLLGIEGHVCVLQTCLDLVEHGYTVHLVVDAISSQRPLDRAVGIQRMQQAGALVTTVEAAAFELMGSADHPNFKAISQLAKD 2047
            M++AA R +GKL P ++ L VCDVQERFR  I  M +VI   KFM  VA+ L +PCV T+QY +  G T+ + +       + +P   VFEKKLFSMCT++   HL    +  +   L++GIE HVC+ QTCLDL+E G+ VH++ D +SSQ+ +DR + ++RM+Q+GA +TT ++AAF L+G AD+ NFKA+S+L KD
Sbjct:    1 MSSAARRAVGKLCPKSSVLLVCDVQERFRPLIHNMETVINTTKFMTAVAKELQIPCVATQQYTKVFGPTIPDAIADPNDIGTSIP---VFEKKLFSMCTEECSKHLASLSSSEKTSYLIVGIEAHVCLQQTCLDLLEQGHDVHIIADGVSSQQKIDRDIALKRMEQSGAWITTCQSAAFMLLGGADNANFKAVSKLVKD 196          
BLAST of mRNA_P-wetherbeei_contig1387.1.2 vs. uniprot
Match: D8UKC4_VOLCA (Isochorismatase domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UKC4_VOLCA)

HSP 1 Score: 185 bits (470), Expect = 4.800e-51
Identity = 104/193 (53.89%), Postives = 127/193 (65.80%), Query Frame = 2
Query: 1469 AARTIGKLRPPTTSLFVCDVQERFREKIWQMHSVIPAAKFMLDVARTLDVPCVVTEQYPRALGRTVAELGIGESASSPLPHLAVFEKKLFSMCTDDVLTHLRGFGAGRRDVLLLGIEGHVCVLQTCLDLVEHGYTVHLVVDAISSQRPLDRAVGIQRMQQAGALVTTVEAAAFELMGSADHPNFKAISQLAKD 2047
            AAR +G+LRP +++LFVCDVQE+FR  I     VI  A+ M+  A  LD+P +VTEQYP+ALG TV+E+     AS P     V  K LFSMCT DV   L+      R V+LLGIE HVCV QT LDL+E GY VHL+VD ISS RP  RA G+QRM QAGAL++  E A F+L   + HP FK IS L K+
Sbjct:    2 AARALGRLRPDSSALFVCDVQEKFRPLIAGFPVVIDTARRMVQAANALDIPVMVTEQYPKALGSTVSEVAGVLPASCP-----VIAKTLFSMCTPDVDAWLKS-KPDVRQVMLLGIEAHVCVFQTSLDLLERGYEVHLLVDGISSSRPHHRAAGLQRMAQAGALISNSEMAMFQLAADSKHPRFKEISALVKE 188          
BLAST of mRNA_P-wetherbeei_contig1387.1.2 vs. uniprot
Match: A0A8J4G3L0_9CHLO (Isochorismatase domain-containing protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4G3L0_9CHLO)

HSP 1 Score: 184 bits (468), Expect = 9.280e-51
Identity = 102/193 (52.85%), Postives = 126/193 (65.28%), Query Frame = 2
Query: 1469 AARTIGKLRPPTTSLFVCDVQERFREKIWQMHSVIPAAKFMLDVARTLDVPCVVTEQYPRALGRTVAELGIGESASSPLPHLAVFEKKLFSMCTDDVLTHLRGFGAGRRDVLLLGIEGHVCVLQTCLDLVEHGYTVHLVVDAISSQRPLDRAVGIQRMQQAGALVTTVEAAAFELMGSADHPNFKAISQLAKD 2047
            A+R +G+LRP  T+LFVCDVQE+FR  I     VI   + M+  A  LD+P +VTEQYP+ALG TV+E+     A++  P   V  K LFSMCT DV   L+      R V+LLGIE HVCV QT LDL+E GY VHL+ D ISS RP  RA G+QRM QAGAL++  E A F+L G + HP FK IS L K+
Sbjct:    2 ASRVLGRLRPSNTALFVCDVQEKFRPLIAGFPIVIDTTRRMVQAANVLDIPVMVTEQYPKALGSTVSEV-----ANALPPACPVVSKTLFSMCTPDVDAWLKS-KPDVRQVMLLGIEAHVCVFQTSLDLLERGYEVHLLADGISSSRPHHRAAGLQRMAQAGALISNSEMALFQLTGDSKHPRFKEISALVKE 188          
BLAST of mRNA_P-wetherbeei_contig1387.1.2 vs. uniprot
Match: A0A2P6VGK8_9CHLO (Isochorismatase domain-containing 2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VGK8_9CHLO)

HSP 1 Score: 185 bits (470), Expect = 1.250e-50
Identity = 105/202 (51.98%), Postives = 134/202 (66.34%), Query Frame = 2
Query: 1445 SVGEMAAAA-ARTIGKLRPPTTSLFVCDVQERFREKIWQMHSVIPAAKFMLDVARTLDVPCVVTEQYPRALGRTVAELGIGESASSPLPHLAVFEKKLFSMCTDDVLTHLRGFGAGRRDVLLLGIEGHVCVLQTCLDLVEHGYTVHLVVDAISSQRPLDRAVGIQRMQQAGALVTTVEAAAFELMGSADHPNFKAISQLAKD 2047
            +V  MAAAA  R++G+L P  T+L VCDVQERFR  I    +V+  ++ ML  A  L +P +VTEQYP+ALG TV EL       SP     V  K LFSMCTD+V   L G  A ++ VL++GIE HVCVLQTCLDL+E GY VH+VVD +SSQR  DR+V +QR+ QAGA + T E   F++M +  HP FKA+S L K+
Sbjct:   28 TVRAMAAAADGRSVGRLPPDETALLVCDVQERFRPVISGFPAVVDTSRRMLRAASALQLPVIVTEQYPKALGNTVEELQPHIPPGSP-----VVAKTLFSMCTDEVNAALEGLPAVKK-VLIVGIETHVCVLQTCLDLLERGYEVHIVVDGVSSQRLGDRSVALQRLAQAGAFLATSEMVMFQMMRNTGHPAFKAVSALCKE 223          
BLAST of mRNA_P-wetherbeei_contig1387.1.2 vs. uniprot
Match: W7U6T6_9STRA (Isochorismatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6T6_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.270e-50
Identity = 98/196 (50.00%), Postives = 131/196 (66.84%), Query Frame = 2
Query: 1460 AAAAARTIGKLRPPTTSLFVCDVQERFREKIWQMHSVIPAAKFMLDVARTLDVPCVVTEQYPRALGRTVAELGIGESASSPLPHLAVFEKKLFSMCTDDVLTHLRGFGAGRRDVLLLGIEGHVCVLQTCLDLVEHGYTVHLVVDAISSQRPLDRAVGIQRMQQAGALVTTVEAAAFELMGSADHPNFKAISQLAKD 2047
            A+  AR IGKL+P TT+  +CDVQERFR+ IW    VI  AKFM  V + L +P + +EQYP+A G TV EL     A++    +  FEKK+FSM TD++   ++     R+ V+L GIE HVCV QT LDL+E GY VH++VD +SSQ+  DRAV ++RM++AGA +TT E+  F LM +A HP FK IS L K+
Sbjct:   22 ASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPEL----KAAAVDYCIPTFEKKMFSMLTDELKAQMQ-CEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKE 212          
BLAST of mRNA_P-wetherbeei_contig1387.1.2 vs. uniprot
Match: A0A6V1K7V1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K7V1_HETAK)

HSP 1 Score: 184 bits (467), Expect = 2.970e-50
Identity = 96/194 (49.48%), Postives = 126/194 (64.95%), Query Frame = 2
Query: 1478 TIGKLRPPTTSLFVCDVQERFREKIWQMHSVIPAAKFMLDVARTLDVPCVVTEQYPRALGRTVAELGIG-----ESASSPLPHLAVFEKKLFSMCTDDVLTHLRGFGAGRRDVLLLGIEGHVCVLQTCLDLVEHGYTVHLVVDAISSQRPLDRAVGIQRMQQAGALVTTVEAAAFELMGSADHPNFKAISQLAK 2044
            ++GKL+P +T   +CDVQERFR  I+Q  +V+  +++++ ++R L +P + T+QY RA G T  E+ +      ES +     + VFEKKLFSM TD+V T L   G   R V+L G E HVCV QTCLDL+E G  VH+V D  SSQRP DR V +QRM Q+GA VTT E+  F LM SA HPNFK +S L K
Sbjct:    5 SVGKLQPASTLFLLCDVQERFRSLIYQAETVVNTSRYLVQISRELGIPVIATQQYTRAFGPTCPEIPLTAPEPEESGAPKATDIPVFEKKLFSMITDEVGTALDQCGPSLRSVVLFGQETHVCVQQTCLDLLERGLEVHVVADGCSSQRPTDREVALQRMAQSGAFVTTAESLVFMLMRSAAHPNFKKVSALTK 198          
BLAST of mRNA_P-wetherbeei_contig1387.1.2 vs. uniprot
Match: A0A1E7FE23_9STRA (Isochorismatase hydrolase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE23_9STRA)

HSP 1 Score: 183 bits (464), Expect = 5.340e-50
Identity = 90/194 (46.39%), Postives = 131/194 (67.53%), Query Frame = 2
Query: 1466 AAARTIGKLRPPTTSLFVCDVQERFREKIWQMHSVIPAAKFMLDVARTLDVPCVVTEQYPRALGRTVAELGIGESASSPLPHLA---VFEKKLFSMCTDDVLTHLRGFGAGRRDVLLLGIEGHVCVLQTCLDLVEHGYTVHLVVDAISSQRPLDRAVGIQRMQQAGALVTTVEAAAFELMGSADHPNFKAISQL 2038
            +++ ++GKL+P  T   +CD+Q+RFR   W+  ++I  AK+M  VA+ LD+P V+T+QY +  G TV +    +       H A   +FEKK FSMCTD+V +H++     R  V++ GIE HVCV QTCLDL+E G  VH++ D++SSQ+P DR + + RM QAGA +TT ++AAF LM SA+H NFKA+S+L
Sbjct:   15 SSSTSVGKLKPENTVFLLCDIQDRFRPLTWRGETIINTAKYMTSVAKELDIPIVITQQYTKVFGETVKDTFADQE------HFASCKIFEKKRFSMCTDEVKSHMQTLN--RDSVVIFGIEAHVCVQQTCLDLLEDGKEVHIIADSVSSQQPYDRELALNRMSQAGAFLTTAQSAAFMLMQSAEHANFKAVSKL 200          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1387.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJG0_ECTSI1.430e-5852.66Isochorismatase domain-containing protein n=1 Tax=... [more]
A0A6H5KEX0_9PHAE2.120e-5853.33Isochorismatase domain-containing protein n=1 Tax=... [more]
A0A6U1N7F4_9STRA9.360e-5448.54Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U3TC81_9STRA7.730e-5347.74Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
D8UKC4_VOLCA4.800e-5153.89Isochorismatase domain-containing protein n=1 Tax=... [more]
A0A8J4G3L0_9CHLO9.280e-5152.85Isochorismatase domain-containing protein n=2 Tax=... [more]
A0A2P6VGK8_9CHLO1.250e-5051.98Isochorismatase domain-containing 2 n=1 Tax=Micrac... [more]
W7U6T6_9STRA2.270e-5050.00Isochorismatase n=1 Tax=Nannochloropsis gaditana T... [more]
A0A6V1K7V1_HETAK2.970e-5049.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1E7FE23_9STRA5.340e-5046.39Isochorismatase hydrolase n=1 Tax=Fragilariopsis c... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1387contigP-wetherbeei_contig1387:94..2657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LM27
PFAMsDUF4187,G-patch
Model size2047
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
GOsGO:0000775,GO:0000776,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0098687
Exons4
Evalue1.27e-43
EggNOG OGsKOG1994@1|root,KOG1994@2759|Eukaryota
DescriptionDUF4187
Cds size963
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1387.1.2prot_P-wetherbeei_contig1387.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1387 363..1449 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185999.8385088-UTR-P-wetherbeei_contig1387:93..3621683185999.8385088-UTR-P-wetherbeei_contig1387:93..362Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1387 94..362 +
1683185999.8694067-UTR-P-wetherbeei_contig1387:1449..18011683185999.8694067-UTR-P-wetherbeei_contig1387:1449..1801Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1387 1450..1801 +
1683185999.8820982-UTR-P-wetherbeei_contig1387:1925..20841683185999.8820982-UTR-P-wetherbeei_contig1387:1925..2084Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1387 1926..2084 +
1683185999.8910131-UTR-P-wetherbeei_contig1387:2353..26571683185999.8910131-UTR-P-wetherbeei_contig1387:2353..2657Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1387 2354..2657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185999.8497393-CDS-P-wetherbeei_contig1387:362..6521683185999.8497393-CDS-P-wetherbeei_contig1387:362..652Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1387 363..652 +
1683185999.8591032-CDS-P-wetherbeei_contig1387:776..14491683185999.8591032-CDS-P-wetherbeei_contig1387:776..1449Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1387 777..1449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1387.1.2

>prot_P-wetherbeei_contig1387.1.2 ID=prot_P-wetherbeei_contig1387.1.2|Name=mRNA_P-wetherbeei_contig1387.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=321bp
MLRLELYDSKKVLSLTSNFLACARLLLALVTAPVMSKKEVLFHMQEKREE
GLSTGIGADNAGFKLLMKMGYKGGGLGKDGNGQTAPLKPVMKSGRAGLGK
EAEQRRRDDLKRTLLERMRGARAQQDERNRQDFRAAQSLQFRRRREAVDL
ARLQRLVETFDRGAGMPPSVMWPHEEEGGDALLSSLEESAGGGGDGGKED
SFRGASGGSDGGGGGTDGGGSSSSSGAASCGRPAQTAAAPASLSSAASAG
LTVGTAVDGEAGAEKSEWASLEAGERLACCIGYLRSAYLHCTFCGITFEN
AEEMAGSCPGPGREEHDDCD*
back to top

mRNA from alignment at P-wetherbeei_contig1387:94..2657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1387.1.2 ID=mRNA_P-wetherbeei_contig1387.1.2|Name=mRNA_P-wetherbeei_contig1387.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2564bp|location=Sequence derived from alignment at P-wetherbeei_contig1387:94..2657+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGATGACTACATGTCTCCAGCCTTTTTGGACGAAGCTCCTCTCGAGCC TGAAAAGTCGAAGAAACGAGCAAAACCAAAGGCAGCCGGTGAGCCTTCTC GCACAGTGGTTAGCTTTTGAGTTAGCAACGCCATTTTCCTGTCGTTTCTT TGCACAGAAGCTTTGCGGCCCTCCTCTTTCTCCCTCTTCCTCCCTTTCAC TTTCCTGCTGAAAAGCGTTTCTGGCGGCGAGATGGCGGCACCAGTGTCTG GTTTTAAGGTTTACATAACATGCTGAGGCTGGAGCTGTATGATTCTAAGA AAGTATTGAGCCTAACTTCTAACTTCCTTGCCTGTGCCCGTTTGCTCCTT GCCTTAGTAACCGCACCGGTCATGTCCAAGAAAGAGGTTCTTTTCCACAT GCAAGAAAAGAGGGAGGAAGGGCTGAGCACAGGAATCGGCGCCGACAACG CCGGCTTCAAGCTGCTTATGAAGATGGGGTACAAGGGCGGCGGCCTGGGC AAGGATGGCAACGGTCAAACAGCGCCCTTGAAACCTGTCATGAAATCAGG ACGAGCAGGGTAAGTTCGTCGCCAGCGCGCTGTGGACTCTGGAATCGTCG CCTGTCTTGGGCTTGTTTTTTCTATGGGTCACTGTGGTCACGCTTGACTG CGTATCTTCCGCGCCTTTAAAACAATCCCACAGGCTCGGCAAGGAGGCGG AGCAGCGCCGTCGCGACGACCTCAAGCGGACGTTGCTGGAGCGCATGCGC GGCGCGCGTGCCCAGCAGGACGAGCGAAATCGCCAGGACTTCCGTGCCGC CCAGAGCCTCCAGTTCCGGCGGCGGCGCGAAGCGGTTGACCTAGCGCGGT TACAGCGGCTGGTGGAGACGTTCGACCGCGGCGCCGGCATGCCGCCAAGT GTCATGTGGCCGCACGAGGAGGAGGGGGGGGACGCGCTTTTAAGCTCCTT GGAGGAAAGCGCGGGTGGCGGCGGCGACGGTGGGAAGGAAGACAGCTTTC GCGGAGCCAGCGGCGGCAGCGACGGCGGCGGCGGCGGCACTGACGGCGGG GGTAGCAGCAGCAGCAGTGGAGCCGCATCGTGCGGAAGACCCGCTCAGAC GGCGGCTGCGCCGGCGTCGTTGTCGTCTGCTGCGTCAGCTGGCCTTACTG TAGGCACTGCTGTTGATGGTGAAGCCGGTGCAGAGAAGTCGGAGTGGGCG TCGCTCGAGGCCGGAGAGCGGCTTGCGTGTTGCATCGGGTATCTGCGGTC AGCGTACCTCCATTGCACCTTTTGTGGCATCACCTTTGAAAACGCCGAGG AAATGGCGGGCTCGTGTCCTGGACCGGGCAGGGAAGAGCACGACGACTGC GACTAAAGGGACGGGCTGGCGTTGGCGCTTACCCGTGTTCATAGAAACCC CTGTGAGCGGACTACATCCGAGAGCTGAGCTTGAGACGCCACGCGTGGGA TTATGCAAGTGTGTGCATCCACTCGCTCTCTTCTCTCTGCTGTCTGCTCC GTCTTTCCGTGCATCCTTAAATCTTCGGCTTGGGTTTGCTCCGTTTTGAG AAAAAGAGTGTCGATTATTCCGTTGGGGAAATGGCAGCCGCCGCAGCACG CACGATTGGCAAATTACGCCCTCCCACAACTTCGCTTTTCGTCTGCGACG TTCAGGAGAGATTTCGAGAAAAGATTTGGCAGATGCACAGCGTGATCCCG GCCGCCAAGTGAGCTTGAAACATGATGCTCTCCCAAGTCTCCTCCGCGCA GGTTCTGCGCGGACCGAAAGAAAAGGCCTAACAAATCTTTTCTTGGTGTC GTCCTTCACTTGTATTATTTCTCTGTTTCCAGGTTTATGCTCGACGTGGC CAGAACGCTCGATGTGCCGTGCGTGGTCACTGAGCAGTATCCCAGGGCGC TCGGCCGAACTGTGGCTGAGCTGGGGATTGGGGAGTCCGCGTCAAGTCCT CTCCCTCACCTAGCCGTCTTCGAGAAGAAGCTCTTCTCAATGTGAGGAAA GCAGCGGGCTAGCTTACAGCTTTGCCTGCCTACCCCTTCCCTCTCGCTGT GCACTTCCCTTTCCTCTTCAGAGAGCGTACAACAGAAAATTCCTCCCCCC TGTCTCCGCTTTTTCCATCTTCCGAAAACGAACCGCCGCATGAGGTGGCG CGAAACACACGAAACGAAACGGCGGCACCGAACGAACACGGTGACTCTAA CCGAAATCGGTGGCGCCGGCGGCGGCGGCGGCGGCGGCGGCGGCAAACCA AAACAAACAGGTGCACCGACGACGTCCTCACCCACCTGCGCGGCTTTGGT GCCGGCCGCCGCGACGTGCTTCTCCTCGGCATCGAGGGCCACGTCTGCGT CCTCCAGACGTGCCTCGACTTGGTCGAACACGGCTACACGGTCCACTTGG TCGTCGACGCTATCTCCAGCCAGCGGCCGCTTGACCGCGCCGTGGGCATC CAGCGGATGCAGCAGGCCGGGGCGCTCGTGACGACGGTGGAGGCGGCGGC GTTCGAGCTGATGGGGTCGGCGGACCACCCGAATTTCAAGGCCATCAGCC AGCTGGCGAAGGAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1387:94..2657+

>mRNA_P-wetherbeei_contig1387.1.2 ID=mRNA_P-wetherbeei_contig1387.1.2|Name=mRNA_P-wetherbeei_contig1387.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=963bp|location=Sequence derived from alignment at P-wetherbeei_contig1387:94..2657+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAGGCTGGAGCTGTATGATTCTAAGAAAGTATTGAGCCTAACTTC
TAACTTCCTTGCCTGTGCCCGTTTGCTCCTTGCCTTAGTAACCGCACCGG
TCATGTCCAAGAAAGAGGTTCTTTTCCACATGCAAGAAAAGAGGGAGGAA
GGGCTGAGCACAGGAATCGGCGCCGACAACGCCGGCTTCAAGCTGCTTAT
GAAGATGGGGTACAAGGGCGGCGGCCTGGGCAAGGATGGCAACGGTCAAA
CAGCGCCCTTGAAACCTGTCATGAAATCAGGACGAGCAGGGCTCGGCAAG
GAGGCGGAGCAGCGCCGTCGCGACGACCTCAAGCGGACGTTGCTGGAGCG
CATGCGCGGCGCGCGTGCCCAGCAGGACGAGCGAAATCGCCAGGACTTCC
GTGCCGCCCAGAGCCTCCAGTTCCGGCGGCGGCGCGAAGCGGTTGACCTA
GCGCGGTTACAGCGGCTGGTGGAGACGTTCGACCGCGGCGCCGGCATGCC
GCCAAGTGTCATGTGGCCGCACGAGGAGGAGGGGGGGGACGCGCTTTTAA
GCTCCTTGGAGGAAAGCGCGGGTGGCGGCGGCGACGGTGGGAAGGAAGAC
AGCTTTCGCGGAGCCAGCGGCGGCAGCGACGGCGGCGGCGGCGGCACTGA
CGGCGGGGGTAGCAGCAGCAGCAGTGGAGCCGCATCGTGCGGAAGACCCG
CTCAGACGGCGGCTGCGCCGGCGTCGTTGTCGTCTGCTGCGTCAGCTGGC
CTTACTGTAGGCACTGCTGTTGATGGTGAAGCCGGTGCAGAGAAGTCGGA
GTGGGCGTCGCTCGAGGCCGGAGAGCGGCTTGCGTGTTGCATCGGGTATC
TGCGGTCAGCGTACCTCCATTGCACCTTTTGTGGCATCACCTTTGAAAAC
GCCGAGGAAATGGCGGGCTCGTGTCCTGGACCGGGCAGGGAAGAGCACGA
CGACTGCGACTAA
back to top