mRNA_P-wetherbeei_contig13698.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13698.1.1
Unique NamemRNA_P-wetherbeei_contig13698.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13698.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13698contigP-wetherbeei_contig13698:329..1133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G8T5
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N2,Dynein_heavy,MT
Model size698
Max annot lvl2759|Eukaryota
KEGG koko:K18626
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.79e-13
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Ec32 ortholog descriptionDynein heavy chain family
Ec32 orthologEc-00_011080.1
Descriptiondynein light chain binding
Cds size639
COG categoryZ
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.9327726-CDS-P-wetherbeei_contig13698:328..5711683185994.9327726-CDS-P-wetherbeei_contig13698:328..571Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13698 329..571 -
1683185994.946149-CDS-P-wetherbeei_contig13698:678..10741683185994.946149-CDS-P-wetherbeei_contig13698:678..1074Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13698 679..1074 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185994.9556983-UTR-P-wetherbeei_contig13698:1074..11331683185994.9556983-UTR-P-wetherbeei_contig13698:1074..1133Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13698 1075..1133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13698.1.1prot_P-wetherbeei_contig13698.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13698 329..1074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13698.1.1

>prot_P-wetherbeei_contig13698.1.1 ID=prot_P-wetherbeei_contig13698.1.1|Name=mRNA_P-wetherbeei_contig13698.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
MEGAPPAELARHQLLPRHRAMAARLDAALGINDMKTTELLILTGNVLGVI
NQFVGAAHPTIYFSTKPDEVEDELSGFARTKARRKGVPGNHLRATLEPPD
ATEAGSGVIFYFTKMKVAEAGDGMCTPIDPYEADDGALACGLVADPVATL
GAVVGRCLLPALKAQDDTAWGAAPPAWIHEFHVAAEDFAHTLQNVAVETE
TGPHLRLPGNNDG
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mRNA from alignment at P-wetherbeei_contig13698:329..1133-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13698.1.1 ID=mRNA_P-wetherbeei_contig13698.1.1|Name=mRNA_P-wetherbeei_contig13698.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=805bp|location=Sequence derived from alignment at P-wetherbeei_contig13698:329..1133- (Phaeothamnion wetherbeei SAG_119_79)
ATTCACGTTCCGACCCTTGTGCGCCCCTGCGTCAACTTCCTCCGTTGTGT
TCTTGAGCCATGGAGGGCGCCCCGCCGGCGGAGCTGGCGCGGCACCAGCT
TCTCCCGCGCCACCGCGCGATGGCGGCTCGGCTCGACGCTGCCCTCGGGA
TCAACGACATGAAAACGACCGAACTCCTCATCTTGACGGGAAATGTCCTC
GGTGTCATCAACCAATTCGTTGGCGCAGCCCATCCTACAATATACTTCTC
GACAAAGCCGGACGAGGTCGAAGACGAGCTCTCTGGTTTCGCCCGAACGA
AGGCAAGGAGAAAAGGAGTGCCAGGCAACCATCTGCGAGCGACGCTGGAA
CCGCCCGACGCAACTGAAGCCGGCAGCGGCGTCATTTTTTACTTTACTAA
GATGAAAGTCGCCGAAGCAGGCGACGGAATGTGCACGCCGATCGATCCCT
ACGAGGTGCGTCCTTTGCCATTGACTGACAACTCTTTCGAAAGCAAAGAA
CTGCTGCCGCCACTCTGCCCGTTTTCAACAATTTCATTCCTTTTTCATAC
AATACCACTCAGGCGGACGACGGCGCACTGGCATGCGGGCTGGTCGCCGA
CCCAGTGGCGACTCTCGGAGCCGTCGTCGGCCGCTGCCTCCTACCGGCGC
TAAAGGCGCAGGATGACACAGCCTGGGGCGCGGCGCCGCCGGCGTGGATC
CACGAGTTCCACGTTGCGGCGGAAGATTTTGCGCACACGCTCCAGAACGT
CGCGGTAGAGACGGAGACGGGCCCGCACCTCCGGCTGCCGGGCAACAACG
ACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13698:329..1133-

>mRNA_P-wetherbeei_contig13698.1.1 ID=mRNA_P-wetherbeei_contig13698.1.1|Name=mRNA_P-wetherbeei_contig13698.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig13698:329..1133- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGGCGCCCCGCCGGCGGAGCTGGCGCGGCACCAGCTTCTCCCGCG
CCACCGCGCGATGGCGGCTCGGCTCGACGCTGCCCTCGGGATCAACGACA
TGAAAACGACCGAACTCCTCATCTTGACGGGAAATGTCCTCGGTGTCATC
AACCAATTCGTTGGCGCAGCCCATCCTACAATATACTTCTCGACAAAGCC
GGACGAGGTCGAAGACGAGCTCTCTGGTTTCGCCCGAACGAAGGCAAGGA
GAAAAGGAGTGCCAGGCAACCATCTGCGAGCGACGCTGGAACCGCCCGAC
GCAACTGAAGCCGGCAGCGGCGTCATTTTTTACTTTACTAAGATGAAAGT
CGCCGAAGCAGGCGACGGAATGTGCACGCCGATCGATCCCTACGAGGCGG
ACGACGGCGCACTGGCATGCGGGCTGGTCGCCGACCCAGTGGCGACTCTC
GGAGCCGTCGTCGGCCGCTGCCTCCTACCGGCGCTAAAGGCGCAGGATGA
CACAGCCTGGGGCGCGGCGCCGCCGGCGTGGATCCACGAGTTCCACGTTG
CGGCGGAAGATTTTGCGCACACGCTCCAGAACGTCGCGGTAGAGACGGAG
ACGGGCCCGCACCTCCGGCTGCCGGGCAACAACGACGGC
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