mRNA_P-wetherbeei_contig10303.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10303.1.1
Unique NamemRNA_P-wetherbeei_contig10303.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10303.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10303contigP-wetherbeei_contig10303:762..2194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size997
Hectar predicted targeting categoryother localisation
Exons3
Cds size993
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185862.7579887-CDS-P-wetherbeei_contig10303:761..13221683185862.7579887-CDS-P-wetherbeei_contig10303:761..1322Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10303 762..1322 +
1683185862.7662818-CDS-P-wetherbeei_contig10303:1596..17321683185862.7662818-CDS-P-wetherbeei_contig10303:1596..1732Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10303 1597..1732 +
1683185862.7744007-CDS-P-wetherbeei_contig10303:1896..21921683185862.7744007-CDS-P-wetherbeei_contig10303:1896..2192Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10303 1897..2192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10303.1.1prot_P-wetherbeei_contig10303.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10303 762..2192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10303.1.1

>prot_P-wetherbeei_contig10303.1.1 ID=prot_P-wetherbeei_contig10303.1.1|Name=mRNA_P-wetherbeei_contig10303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=331bp
ASTSERGIRTPALGAAFRSASGGQDGADHVVGGEFTPDGNGDAENQDPTS
QNASSLLATGHKLKGSRNGELGPSAESNATAPPAALNGQESGISSNATRA
ATAPAASDDDGGPEAATAATAGAAVSPELESLKQRQRDANAAAAEAEEGE
ALLQKCIDGPDVLRGYEVSPLGVAIRRRTDLRRLLVEGESDMRWRFQQFE
AAEAATARMVCEERRAVEDAAAAAAKGRERIRVISERHENAMARHRAAEA
ELQDVNTREALQEAERRQQEEEEAASAAQAAAAAEAATAAEAAEAAVGAA
RVAAKRLAAAAAQRASEIDKDEEELRALTRG
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mRNA from alignment at P-wetherbeei_contig10303:762..2194+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10303.1.1 ID=mRNA_P-wetherbeei_contig10303.1.1|Name=mRNA_P-wetherbeei_contig10303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1433bp|location=Sequence derived from alignment at P-wetherbeei_contig10303:762..2194+ (Phaeothamnion wetherbeei SAG_119_79)
GCGTCGACGAGCGAGAGGGGCATTCGTACTCCGGCATTGGGAGCAGCATT
TCGATCTGCGTCCGGTGGCCAAGATGGTGCAGATCACGTTGTGGGTGGCG
AATTTACGCCGGACGGCAACGGTGATGCCGAGAACCAGGATCCTACAAGC
CAAAACGCGTCTTCGCTGCTTGCTACCGGGCACAAGCTGAAAGGCAGTAG
AAACGGCGAATTGGGGCCATCAGCAGAAAGTAATGCCACTGCTCCGCCGG
CGGCGCTGAATGGCCAAGAAAGCGGCATCAGCAGCAATGCTACCCGAGCG
GCCACCGCTCCCGCCGCTTCCGACGACGACGGAGGCCCGGAAGCCGCCAC
TGCCGCTACCGCGGGTGCCGCCGTCTCGCCGGAGCTGGAGTCCCTGAAGC
AGCGGCAGCGCGACGCGAATGCAGCCGCCGCAGAGGCCGAAGAGGGCGAG
GCGCTACTGCAGAAGTGCATCGACGGGCCGGACGTGCTGCGCGGTTACGA
AGTGTCGCCGCTCGGCGTCGCCATCCGCCGCCGCACCGACCTCCGACGGC
TGCTGGTGGAGGTGAGAGAGTGGAAGGAAAGGGAGGGAGCAGAGCGGCGG
GGGAGAACGGGGGAGAGGAACGGCGACGCTTAGGTTTTGGGGCTTGTGCG
AACTGTCTAGGCTGCCTTTTTCGGCCGACTGTCGGGTCAGCGCCGCGCAG
CTTGGAGGGCGCTCTTGCGCTGACACATTTGCTATGTGGATAAGCTCTGT
CTTACGCTTTCGCATTTGCTGTTCTCTCGTTTTGTTTACGTCGCTTCGTT
CCCATCGCTGTGCGTTGTCGGCGCCGCCGGTGCAGGGCGAGAGCGATATG
CGGTGGCGCTTCCAGCAGTTCGAGGCGGCCGAGGCGGCGACTGCCCGCAT
GGTGTGCGAGGAACGGCGGGCGGTAGAAGACGCCGCCGCAGCCGCCGCAA
AAGGCAGAGAACGGATTCGAGGTGAGAGAAGGACGCAGTAGTTGCTGTAC
TCATTTTTGTGTTCGCCTCTGCGCATCATCCCAGCAAGCTTTTGGGTGTG
GTGCAGCTCTTGAAGTGCGTTGTGCTAGAAGCCTTTCCGAATGTCGTTCT
TTCCTTCACCGTTGCTCCTATGCTGCTTCTGGCAGTGATCAGCGAGCGCC
ATGAGAATGCAATGGCGAGACATCGCGCGGCAGAAGCCGAATTGCAAGAT
GTTAACACTAGAGAAGCCCTCCAGGAGGCCGAGCGGCGGCAACAGGAGGA
GGAAGAAGCGGCGAGCGCGGCCCAAGCGGCGGCAGCTGCAGAGGCAGCAA
CAGCCGCCGAGGCGGCGGAGGCGGCGGTGGGCGCGGCGCGGGTGGCGGCG
AAGCGACTTGCGGCGGCGGCGGCGCAGCGGGCCTCCGAGATAGACAAGGA
CGAAGAGGAGTTGCGGGCGCTGACGCGTGGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10303:762..2194+

>mRNA_P-wetherbeei_contig10303.1.1 ID=mRNA_P-wetherbeei_contig10303.1.1|Name=mRNA_P-wetherbeei_contig10303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=993bp|location=Sequence derived from alignment at P-wetherbeei_contig10303:762..2194+ (Phaeothamnion wetherbeei SAG_119_79)
GCGTCGACGAGCGAGAGGGGCATTCGTACTCCGGCATTGGGAGCAGCATT
TCGATCTGCGTCCGGTGGCCAAGATGGTGCAGATCACGTTGTGGGTGGCG
AATTTACGCCGGACGGCAACGGTGATGCCGAGAACCAGGATCCTACAAGC
CAAAACGCGTCTTCGCTGCTTGCTACCGGGCACAAGCTGAAAGGCAGTAG
AAACGGCGAATTGGGGCCATCAGCAGAAAGTAATGCCACTGCTCCGCCGG
CGGCGCTGAATGGCCAAGAAAGCGGCATCAGCAGCAATGCTACCCGAGCG
GCCACCGCTCCCGCCGCTTCCGACGACGACGGAGGCCCGGAAGCCGCCAC
TGCCGCTACCGCGGGTGCCGCCGTCTCGCCGGAGCTGGAGTCCCTGAAGC
AGCGGCAGCGCGACGCGAATGCAGCCGCCGCAGAGGCCGAAGAGGGCGAG
GCGCTACTGCAGAAGTGCATCGACGGGCCGGACGTGCTGCGCGGTTACGA
AGTGTCGCCGCTCGGCGTCGCCATCCGCCGCCGCACCGACCTCCGACGGC
TGCTGGTGGAGGGCGAGAGCGATATGCGGTGGCGCTTCCAGCAGTTCGAG
GCGGCCGAGGCGGCGACTGCCCGCATGGTGTGCGAGGAACGGCGGGCGGT
AGAAGACGCCGCCGCAGCCGCCGCAAAAGGCAGAGAACGGATTCGAGTGA
TCAGCGAGCGCCATGAGAATGCAATGGCGAGACATCGCGCGGCAGAAGCC
GAATTGCAAGATGTTAACACTAGAGAAGCCCTCCAGGAGGCCGAGCGGCG
GCAACAGGAGGAGGAAGAAGCGGCGAGCGCGGCCCAAGCGGCGGCAGCTG
CAGAGGCAGCAACAGCCGCCGAGGCGGCGGAGGCGGCGGTGGGCGCGGCG
CGGGTGGCGGCGAAGCGACTTGCGGCGGCGGCGGCGCAGCGGGCCTCCGA
GATAGACAAGGACGAAGAGGAGTTGCGGGCGCTGACGCGTGGC
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