mRNA_P-wetherbeei_contig13614.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13614.2.1
Unique NamemRNA_P-wetherbeei_contig13614.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13614.2.1 vs. uniprot
Match: A0A6H5J8W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 9.120e-20
Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  111 MSTPGTTAAIQKDWHDRETVEVVHLNIVKITRIMNEFDLSVRYKLARLSERINDLERTLEYLEATL 308
            M++  TT AIQ+DW +RE +EVVHLNI+KIT+ +NEF++SVRYKL+ L+ER+  LER LEY E  +
Sbjct:    1 MASKATTDAIQQDWKEREMIEVVHLNILKITKFLNEFEVSVRYKLSTLAERVGSLERHLEYCETAV 66          
BLAST of mRNA_P-wetherbeei_contig13614.2.1 vs. uniprot
Match: L8HDU4_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HDU4_ACACA)

HSP 1 Score: 73.2 bits (178), Expect = 1.000e-14
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  138 IQKDWHDRETVEVVHLNIVKITRIMNEFDLSVRYKLARLSERINDLERTLEYLEATL-----GGEGKKGRE 335
            IQ+DW  RE +E V +NI K+T  +N FD+S RYKLAR++E+++ LER ++YLEA L     GG+G    E
Sbjct:    8 IQRDWEQREFIEDVTVNIKKVTEFLNRFDISTRYKLARINEKLSKLERQMDYLEAALKTVSGGGDGGAAAE 78          
BLAST of mRNA_P-wetherbeei_contig13614.2.1 vs. uniprot
Match: A0A7S4A8C5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8C5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.850e-14
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 3
Query:  108 EMSTPGTTAAIQKDWHDRETVEVVHLNIVKITRIMNEFDLSVRYKLARLSERINDLERTLEYLEA----TLGGE 317
            + +T  T A IQ DW +RE VE+V LN++ IT+ +N+FD + RYKLAR++E++  LERTL+  EA    TL GE
Sbjct:   12 DAATRRTVANIQADWDNRELVEIVQLNLLTITKFLNDFDSATRYKLARVNEKLTRLERTLDSCEAAVRATLEGE 85          
BLAST of mRNA_P-wetherbeei_contig13614.2.1 vs. uniprot
Match: A0A0G4IUL5_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IUL5_PLABS)

HSP 1 Score: 68.2 bits (165), Expect = 9.720e-13
Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 3
Query:  135 AIQKDWHDRETVEVVHLNIVKITRIMNEFDLSVRYKLARLSERINDLERTLEYLEATLGGE 317
            A+Q DW  RE VE++ +N+VKI  ++N FD S R +L+++++RI  LER +EYLE  LG +
Sbjct:   17 AVQADWQQREFVEMLKMNMVKIVAVLNRFDASARERLSKINDRIGTLERNIEYLEVLLGSD 77          
BLAST of mRNA_P-wetherbeei_contig13614.2.1 vs. uniprot
Match: A0A0L8I1E9_OCTBM (Uncharacterized protein n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8I1E9_OCTBM)

HSP 1 Score: 67.4 bits (163), Expect = 1.760e-12
Identity = 33/72 (45.83%), Postives = 51/72 (70.83%), Query Frame = 3
Query:   93 LASVNEMSTPGTTAAIQKDWHDRETVEVVHLNIVKITRIMNEFDLSVRYKLARLSERINDLERTLEYLEATL 308
            +AS  +M+ P +   IQ+DW++RE +EV+  +I KIT  +N FDLS R +LA L+E++  LER +EY+EA +
Sbjct:    1 MASTQQMAPPRS---IQQDWNNREYIEVITCSIKKITDFLNTFDLSCRSRLATLNEKLTQLERKVEYIEARI 69          
BLAST of mRNA_P-wetherbeei_contig13614.2.1 vs. uniprot
Match: A0A6F9D8J4_9ASCI (Probable protein BRICK1-A n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9D8J4_9ASCI)

HSP 1 Score: 63.2 bits (152), Expect = 7.800e-11
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 3
Query:  138 IQKDWHDRETVEVVHLNIVKITRIMNEFDLSVRYKLARLSERINDLERTLEYLEA 302
            IQKDW +RE VEV+  +I KIT  +N FDLS R +LA L+E++  LER +EY+EA
Sbjct:   12 IQKDWANREYVEVITSSIKKITDFLNGFDLSCRSRLATLNEKLTTLERRIEYIEA 66          
BLAST of mRNA_P-wetherbeei_contig13614.2.1 vs. uniprot
Match: A0A7R9GFQ7_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9GFQ7_9CRUS)

HSP 1 Score: 62.8 bits (151), Expect = 1.100e-10
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  141 QKDWHDRETVEVVHLNIVKITRIMNEFDLSVRYKLARLSERINDLERTLEYLEATLGGEG 320
            Q+DW +R  VEV+  +I KI   +N FD+S R+KLA L+E++  LER++EYLEA +   G
Sbjct:   13 QQDWENRADVEVITSSIKKIADFLNSFDMSCRFKLAELNEKLTGLERSIEYLEAKVSKGG 72          
BLAST of mRNA_P-wetherbeei_contig13614.2.1 vs. uniprot
Match: A0A7J7IUD0_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7IUD0_BUGNE)

HSP 1 Score: 62.8 bits (151), Expect = 1.100e-10
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 3
Query:  111 MSTPGTTAA---IQKDWHDRETVEVVHLNIVKITRIMNEFDLSVRYKLARLSERINDLERTLEYLEATL 308
            MS P   +A   IQ+DW +RE VEV+  +I +IT  +N FDLS R +LA L++R+N LE+ ++Y+EA++
Sbjct:    1 MSKPVDNSARSQIQQDWANREYVEVITTSIKRITDFLNSFDLSCRSRLANLNDRLNYLEKKVDYIEASV 69          
BLAST of mRNA_P-wetherbeei_contig13614.2.1 vs. uniprot
Match: A0A183IT34_9BILA (Uncharacterized protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IT34_9BILA)

HSP 1 Score: 62.4 bits (150), Expect = 1.860e-10
Identity = 27/57 (47.37%), Postives = 43/57 (75.44%), Query Frame = 3
Query:  138 IQKDWHDRETVEVVHLNIVKITRIMNEFDLSVRYKLARLSERINDLERTLEYLEATL 308
            +++DW +RE VEV+  N+ KI   +N F+LS R +LA L+E++N +ER +EYLEA++
Sbjct:   19 LKEDWDNREYVEVISFNVKKIADFLNAFELSCRSRLAVLNEKLNSIERKIEYLEASI 75          
BLAST of mRNA_P-wetherbeei_contig13614.2.1 vs. uniprot
Match: V4AKB1_LOTGI (Uncharacterized protein n=2 Tax=Gastropoda TaxID=6448 RepID=V4AKB1_LOTGI)

HSP 1 Score: 61.6 bits (148), Expect = 3.360e-10
Identity = 28/57 (49.12%), Postives = 43/57 (75.44%), Query Frame = 3
Query:  138 IQKDWHDRETVEVVHLNIVKITRIMNEFDLSVRYKLARLSERINDLERTLEYLEATL 308
            IQ+DW +RE VEV+  +I KI+  +N FD+S R +LA L+E++ +LER +EY+EA +
Sbjct:   15 IQQDWANREYVEVITCSIKKISDFLNSFDMSCRSRLATLNEKLTELERRVEYIEARI 71          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13614.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8W9_9PHAE9.120e-2059.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
L8HDU4_ACACA1.000e-1449.30Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A7S4A8C5_9STRA4.850e-1450.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0G4IUL5_PLABS9.720e-1347.54Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0L8I1E9_OCTBM1.760e-1245.83Uncharacterized protein n=2 Tax=Octopus TaxID=6643... [more]
A0A6F9D8J4_9ASCI7.800e-1156.36Probable protein BRICK1-A n=1 Tax=Phallusia mammil... [more]
A0A7R9GFQ7_9CRUS1.100e-1048.33Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]
A0A7J7IUD0_BUGNE1.100e-1046.38Uncharacterized protein n=1 Tax=Bugula neritina Ta... [more]
A0A183IT34_9BILA1.860e-1047.37Uncharacterized protein n=1 Tax=Soboliphyme baturi... [more]
V4AKB1_LOTGI3.360e-1049.12Uncharacterized protein n=2 Tax=Gastropoda TaxID=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13614contigP-wetherbeei_contig13614:1353..1721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009033469.1
Preferred nameBRK1
Model size369
Max annot lvl2759|Eukaryota
KEGG koko:K05752
KEGG Pathwayko04810,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0001701,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0006810,GO:0006897,GO:0006909,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007264,GO:0007265,GO:0007275,GO:0007399,GO:0007417,GO:0008064,GO:0008150,GO:0008154,GO:0008284,GO:0008360,GO:0008582,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010026,GO:0010090,GO:0010591,GO:0010592,GO:0010638,GO:0016020,GO:0016043,GO:0016192,GO:0016601,GO:0021551,GO:0022603,GO:0022604,GO:0022607,GO:0023052,GO:0030027,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030041,GO:0030054,GO:0030154,GO:0030175,GO:0030832,GO:0030833,GO:0030838,GO:0031143,GO:0031209,GO:0031252,GO:0031268,GO:0031269,GO:0031334,GO:0031344,GO:0031346,GO:0032271,GO:0032273,GO:0032433,GO:0032501,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0034315,GO:0034622,GO:0035556,GO:0038093,GO:0038094,GO:0038096,GO:0040008,GO:0040011,GO:0042127,GO:0042802,GO:0042995,GO:0043009,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0045010,GO:0048010,GO:0048468,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048638,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051125,GO:0051127,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051258,GO:0051259,GO:0051260,GO:0051489,GO:0051491,GO:0051493,GO:0051495,GO:0051674,GO:0051716,GO:0051960,GO:0051963,GO:0060187,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0070206,GO:0070207,GO:0071840,GO:0071944,GO:0090066,GO:0090558,GO:0090626,GO:0097435,GO:0098657,GO:0098858,GO:0110053,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:1902743,GO:1902745,GO:1902903,GO:1902905,GO:1904396,GO:2000026,GO:2000601
Exons1
Evalue7.94e-15
EggNOG OGs2CHT7@1|root,2S3PY@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_010360.1
Descriptionregulation of actin polymerization or depolymerization
Cds size243
COG categoryS
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185992.627465-UTR-P-wetherbeei_contig13614:1352..13681683185992.627465-UTR-P-wetherbeei_contig13614:1352..1368Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13614 1353..1368 -
1683185992.6498291-UTR-P-wetherbeei_contig13614:1611..17211683185992.6498291-UTR-P-wetherbeei_contig13614:1611..1721Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13614 1612..1721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185992.6400564-CDS-P-wetherbeei_contig13614:1368..16111683185992.6400564-CDS-P-wetherbeei_contig13614:1368..1611Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13614 1369..1611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13614.2.1prot_P-wetherbeei_contig13614.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13614 1369..1611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13614.2.1

>prot_P-wetherbeei_contig13614.2.1 ID=prot_P-wetherbeei_contig13614.2.1|Name=mRNA_P-wetherbeei_contig13614.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
MSTPGTTAAIQKDWHDRETVEVVHLNIVKITRIMNEFDLSVRYKLARLSE
RINDLERTLEYLEATLGGEGKKGREFLSNN*
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mRNA from alignment at P-wetherbeei_contig13614:1353..1721-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13614.2.1 ID=mRNA_P-wetherbeei_contig13614.2.1|Name=mRNA_P-wetherbeei_contig13614.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig13614:1353..1721- (Phaeothamnion wetherbeei SAG_119_79)
CTCCACGAAAAGCTACGACCAAGAGTCGACACGGAGAAGCGACGCAAGGA AGTCCTTCTCATTTCTCTCTTCCGCTGTTGTGCGCGTGCTTTCTCGCAAG CGTAAACGAAATGTCCACGCCCGGCACTACTGCAGCAATTCAGAAGGACT GGCACGACCGCGAGACCGTCGAGGTGGTGCACCTGAACATCGTCAAGATC ACGAGGATAATGAACGAGTTCGATCTGTCGGTGCGCTACAAGCTGGCGCG GCTAAGTGAACGGATCAACGACCTGGAGAGGACGCTCGAGTATTTGGAGG CAACGCTGGGAGGAGAAGGGAAGAAAGGAAGAGAGTTTTTGAGCAATAAC TGAAGTATCCTTTCCTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13614:1353..1721-

>mRNA_P-wetherbeei_contig13614.2.1 ID=mRNA_P-wetherbeei_contig13614.2.1|Name=mRNA_P-wetherbeei_contig13614.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig13614:1353..1721- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCACGCCCGGCACTACTGCAGCAATTCAGAAGGACTGGCACGACCG
CGAGACCGTCGAGGTGGTGCACCTGAACATCGTCAAGATCACGAGGATAA
TGAACGAGTTCGATCTGTCGGTGCGCTACAAGCTGGCGCGGCTAAGTGAA
CGGATCAACGACCTGGAGAGGACGCTCGAGTATTTGGAGGCAACGCTGGG
AGGAGAAGGGAAGAAAGGAAGAGAGTTTTTGAGCAATAACTGA
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