mRNA_P-wetherbeei_contig13573.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13573.1.1
Unique NamemRNA_P-wetherbeei_contig13573.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13573.1.1 vs. uniprot
Match: A0A836C961_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C961_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.750e-16
Identity = 41/51 (80.39%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 MKLSNRGPGAALPVSHTCFFSVELPQLETEAAMRRALLTAIHFGVGGILNA 153
            MKLSNRG  AALPVSHTCFFSVELP  +TE  MRR LLTAIHFG  GILNA
Sbjct:  376 MKLSNRG-NAALPVSHTCFFSVELPDYKTEDEMRRGLLTAIHFGACGILNA 425
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BLAST of mRNA_P-wetherbeei_contig13573.1.1 vs. uniprot
Match: A0A7S3GZC0_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZC0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.970e-16
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 MKLSNRGPGAALPVSHTCFFSVELPQLETEAAMRRALLTAIHFGVGGILN 150
            M+L+N G  A LPVSHTCFFSVELP+  TE AMR  LLTAIH+GVGGILN
Sbjct:   97 MRLTNGGT-ATLPVSHTCFFSVELPEYPTEEAMRHGLLTAIHYGVGGILN 145
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BLAST of mRNA_P-wetherbeei_contig13573.1.1 vs. uniprot
Match: I2CRX4_NANGC (HECT domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CRX4_NANGC)

HSP 1 Score: 64.3 bits (155), Expect = 1.220e-12
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 MKLSNRGPGA-ALPVSHTCFFSVELPQLETEAAMRRALLTAIHFGVGGILN 150
            M++S R  G  +LP SHTCFFS+ELP  ++EAAMR+ LLTAI +G  GILN
Sbjct:    1 MQISRRNAGEDSLPASHTCFFSIELPPYQSEAAMRKGLLTAITYGAVGILN 51
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BLAST of mRNA_P-wetherbeei_contig13573.1.1 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.810e-12
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   31 ALPVSHTCFFSVELPQLETEAAMRRALLTAIHFGVGGILNA 153
            +LPVSHTCFFS+ELP   TE  MR+ LLTA+HFG+GGILNA
Sbjct: 6561 SLPVSHTCFFSIELPPYSTEERMRKGLLTAVHFGMGGILNA 6601
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BLAST of mRNA_P-wetherbeei_contig13573.1.1 vs. uniprot
Match: A0A7S3UVM0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVM0_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 7.610e-11
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   28 AALPVSHTCFFSVELPQLETEAAMRRALLTAIHFGVGGILN 150
            A LPV+HTCFFS+ELP   +E  MR+ LLTAI+FGVGGILN
Sbjct:  442 ATLPVTHTCFFSIELPAYSSEEIMRKRLLTAINFGVGGILN 482
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BLAST of mRNA_P-wetherbeei_contig13573.1.1 vs. uniprot
Match: A0A7S1G912_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G912_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.190e-10
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 MKLSNRGPG-AALPVSHTCFFSVELPQLETEAAMRRALLTAIHFGVGGILNA 153
            MK++ R     +LP SHTCFFS+ELP   ++  MRR LL A+HFG+GGILNA
Sbjct:  270 MKITRRSASDESLPHSHTCFFSIELPPYGSDQVMRRRLLAAVHFGLGGILNA 321
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BLAST of mRNA_P-wetherbeei_contig13573.1.1 vs. uniprot
Match: A0A7S2SQP6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQP6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.430e-10
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   22 PGAALPVSHTCFFSVELPQLETEAAMRRALLTAIHFGVGGILN 150
            P A LP +HTCFFS+ELP   +E    + LLTAI++GVGGILN
Sbjct:   72 PDATLPETHTCFFSIELPAYSSEEICNQRLLTAINYGVGGILN 114
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BLAST of mRNA_P-wetherbeei_contig13573.1.1 vs. uniprot
Match: A0A7S2SQP9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQP9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.400e-9
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   22 PGAALPVSHTCFFSVELPQLETEAAMRRALLTAIHFGVGGILN 150
            P A LP +HTCFFS+ELP   +E    + LLTAI++GVGGILN
Sbjct:  134 PDATLPETHTCFFSIELPAYSSEEICNQRLLTAINYGVGGILN 176
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BLAST of mRNA_P-wetherbeei_contig13573.1.1 vs. uniprot
Match: A0A7S2D699_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D699_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.220e-9
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   34 LPVSHTCFFSVELPQLETEAAMRRALLTAIHFGVGGILN 150
            LPV+HTCFFS+ELP   TE  ++  LLTAI +GVGGILN
Sbjct:  221 LPVTHTCFFSIELPDYSTEEILKTRLLTAITYGVGGILN 259
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BLAST of mRNA_P-wetherbeei_contig13573.1.1 vs. uniprot
Match: D8M1C1_BLAHO (HECT domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M1C1_BLAHO)

HSP 1 Score: 55.1 bits (131), Expect = 1.910e-7
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   34 LPVSHTCFFSVELPQLETEAAMRRALLTAIHFGVGGIL 147
            LP++HTCFF ++LPQ  T+A MR  LL AIHFG G  L
Sbjct: 2262 LPIAHTCFFQLDLPQYSTDAIMRERLLVAIHFGAGEFL 2299
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13573.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A836C961_9STRA4.750e-1680.39HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3GZC0_9STRA6.970e-1674.00HECT-type E3 ubiquitin transferase n=1 Tax=Spumell... [more]
I2CRX4_NANGC1.220e-1260.78HECT domain-containing protein n=3 Tax=Monodopsida... [more]
D7FVC4_ECTSI1.810e-1273.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UVM0_HETAK7.610e-1170.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1G912_9STRA1.190e-1057.69Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2SQP6_9STRA7.430e-1060.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SQP9_9STRA2.400e-960.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2D699_9STRA4.220e-966.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
D8M1C1_BLAHO1.910e-760.53HECT domain-containing protein n=1 Tax=Blastocysti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13573contigP-wetherbeei_contig13573:936..1335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVC4
Preferred nameHERC1
PFAMsCLTH,HECT,RCC1,SPRY,WD40
Model size156
Max annot lvl2759|Eukaryota
KEGG koko:K10594,ko:K12864
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006808,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051020,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575
Exons2
Evalue2.96e-13
EggNOG OGsCOG5184@1|root,KOG1477@1|root,KOG1426@2759|Eukaryota,KOG1477@2759|Eukaryota
EC2.3.2.26
Descriptionprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
Cds size156
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.9541998-CDS-P-wetherbeei_contig13573:935..9881683185990.9541998-CDS-P-wetherbeei_contig13573:935..988Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13573 936..988 +
1683185990.9659288-CDS-P-wetherbeei_contig13573:1232..13351683185990.9659288-CDS-P-wetherbeei_contig13573:1232..1335Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13573 1233..1335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13573.1.1prot_P-wetherbeei_contig13573.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13573 936..1335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13573.1.1

>prot_P-wetherbeei_contig13573.1.1 ID=prot_P-wetherbeei_contig13573.1.1|Name=mRNA_P-wetherbeei_contig13573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=52bp
MKLSNRGPGAALPVSHTCFFSVELPQLETEAAMRRALLTAIHFGVGGILN
A*
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mRNA from alignment at P-wetherbeei_contig13573:936..1335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13573.1.1 ID=mRNA_P-wetherbeei_contig13573.1.1|Name=mRNA_P-wetherbeei_contig13573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=400bp|location=Sequence derived from alignment at P-wetherbeei_contig13573:936..1335+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCTCAGCAACCGCGGGCCGGGCGCGGCGCTGCCCGTCAGCCACAC
GTGGTAAGGCACGGCTGCAGTGGCGGCAGAAGAAAAGACATGAAATGAGG
AGAGAGCTCTTATCATGCCATCGGTTGTGTGCTGTCTCTTGCTCGCTAGT
TGCTTTGGCAATAGGAAGGGCGGGGACGTTGTTTCACATCTTCTACTGCG
CTTTCTTTCCTCTCTTCCTGGTTGCTTTTTTTCTAACTGTCGCTCCCGGC
CACCACATCCACTCTGTCCGTTGTCTGCCAAACCGTTACTATTGCAGCTT
CTTCAGCGTGGAACTGCCGCAGCTCGAGACGGAGGCGGCGATGAGGCGGG
CGCTGCTCACCGCGATTCACTTCGGCGTCGGCGGCATCCTTAACGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13573:936..1335+

>mRNA_P-wetherbeei_contig13573.1.1 ID=mRNA_P-wetherbeei_contig13573.1.1|Name=mRNA_P-wetherbeei_contig13573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig13573:936..1335+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCTCAGCAACCGCGGGCCGGGCGCGGCGCTGCCCGTCAGCCACAC
GTGCTTCTTCAGCGTGGAACTGCCGCAGCTCGAGACGGAGGCGGCGATGA
GGCGGGCGCTGCTCACCGCGATTCACTTCGGCGTCGGCGGCATCCTTAAC
GCCTGA
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