mRNA_P-wetherbeei_contig1354.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1354.2.1
Unique NamemRNA_P-wetherbeei_contig1354.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1354.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1354contigP-wetherbeei_contig1354:5717..7075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1359
Hectar predicted targeting categoryother localisation
Exons1
Cds size996
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.9573336-UTR-P-wetherbeei_contig1354:5716..60701683185989.9573336-UTR-P-wetherbeei_contig1354:5716..6070Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1354 5717..6070 -
1683185989.9779255-UTR-P-wetherbeei_contig1354:7066..70751683185989.9779255-UTR-P-wetherbeei_contig1354:7066..7075Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1354 7067..7075 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.9692962-CDS-P-wetherbeei_contig1354:6070..70661683185989.9692962-CDS-P-wetherbeei_contig1354:6070..7066Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1354 6071..7066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1354.2.1prot_P-wetherbeei_contig1354.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1354 6071..7066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1354.2.1

>prot_P-wetherbeei_contig1354.2.1 ID=prot_P-wetherbeei_contig1354.2.1|Name=mRNA_P-wetherbeei_contig1354.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=332bp
MQEVVMAMRAYRSSMAPFNAPPPSRGGVGGAGVRDWWLNVKVTGNRRAPI
WLAQLANVLLDVVPHSAANERLFSALGFLTDKRRHGLKLETLQQMQAVQM
HYQSLVPTIDQKGPQRKKPKGGAAGAGKAPSSGGASTAAATAAATRAAAA
AMVAAGARAAGGGGADAAVAAEARDAHDADAWPDASDDDGAVASGSDADG
EDAFDAEGRVDDDADVDELMRALEAQHGTDVHSAQAEEAAAAAVPAELLV
GVSGGTWLAPQAFVPPSPPETAQALAEMLSTTWPSVDAASVVFANDYVPP
PAPVTANNTIGSFSSEGVDVAGFFSQPGLFK*
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mRNA from alignment at P-wetherbeei_contig1354:5717..7075-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1354.2.1 ID=mRNA_P-wetherbeei_contig1354.2.1|Name=mRNA_P-wetherbeei_contig1354.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1359bp|location=Sequence derived from alignment at P-wetherbeei_contig1354:5717..7075- (Phaeothamnion wetherbeei SAG_119_79)
TTCCAATCGATGCAGGAAGTCGTGATGGCGATGAGGGCGTACAGGTCCTC
CATGGCGCCGTTCAACGCTCCGCCGCCGAGCCGCGGCGGCGTGGGCGGCG
CAGGCGTCCGAGACTGGTGGCTGAACGTGAAGGTCACAGGCAACCGTCGT
GCGCCGATCTGGTTGGCGCAATTGGCCAACGTCCTTCTCGACGTGGTACC
GCATTCGGCGGCGAACGAGCGCTTATTCAGCGCTTTGGGGTTCTTGACGG
ACAAGCGCCGCCACGGCTTGAAGCTCGAGACGCTGCAGCAGATGCAGGCG
GTCCAGATGCATTACCAGTCGCTGGTGCCAACCATCGATCAGAAAGGGCC
GCAGCGAAAGAAACCAAAGGGAGGCGCCGCCGGCGCGGGAAAGGCGCCGT
CGTCGGGCGGAGCTTCCACCGCCGCGGCAACTGCCGCAGCGACACGAGCG
GCTGCAGCTGCAATGGTGGCGGCAGGGGCTAGGGCAGCGGGGGGCGGCGG
CGCAGATGCGGCGGTAGCAGCAGAAGCGCGTGACGCGCACGATGCTGACG
CGTGGCCGGATGCCAGTGATGATGACGGAGCCGTTGCCAGCGGCAGCGAC
GCCGACGGCGAAGACGCCTTTGACGCTGAGGGCCGCGTGGACGATGATGC
CGACGTCGACGAGCTGATGCGAGCCCTGGAGGCTCAGCATGGGACGGACG
TCCATTCTGCTCAGGCGGAGGAGGCCGCCGCTGCTGCGGTTCCAGCGGAG
CTGCTGGTGGGCGTGAGCGGCGGCACTTGGCTTGCGCCACAGGCGTTTGT
TCCTCCTTCGCCTCCAGAGACCGCCCAAGCTCTGGCAGAGATGCTTTCGA
CCACGTGGCCGAGTGTCGACGCAGCCAGCGTCGTCTTCGCTAACGATTAC
GTGCCACCGCCGGCACCGGTTACCGCCAACAATACGATCGGGAGCTTCTC
TAGCGAGGGTGTGGATGTGGCAGGCTTCTTTTCGCAGCCAGGCTTGTTCA
AATGAGGGAGGCGCCGGGCTCGACGCACAGCTTTGCCAGCGGTGCCGCAC
TGCTTTCCTTGGGCACGCTCTTGTAGGTATGCGTGCGCCGCCGGCCGTCG
CGCTCCTGGAGCGCCGGCAACCGAGCGAGGAGGAGGACATGCTGCCGGCG
TGATGGTCGGTCGCGGCTCGGTGTTGTAAGAAATTAGCTTCTGCTTTCGA
CCAAAAAAAGCTGCTCTGGCGGCACCATTTCGCCATCTCTTTAAAGCAGA
TGAACGCGTTTTGTTAAGCAACGCAAAAAAATGTCGTCTCCGACGGCCCC
CTCGGCCGGGGGGGGCACCCTGCGGGGCTTCGCGGCTTCGCCGCAGCGGA
TGATCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1354:5717..7075-

>mRNA_P-wetherbeei_contig1354.2.1 ID=mRNA_P-wetherbeei_contig1354.2.1|Name=mRNA_P-wetherbeei_contig1354.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=996bp|location=Sequence derived from alignment at P-wetherbeei_contig1354:5717..7075- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGAAGTCGTGATGGCGATGAGGGCGTACAGGTCCTCCATGGCGCC
GTTCAACGCTCCGCCGCCGAGCCGCGGCGGCGTGGGCGGCGCAGGCGTCC
GAGACTGGTGGCTGAACGTGAAGGTCACAGGCAACCGTCGTGCGCCGATC
TGGTTGGCGCAATTGGCCAACGTCCTTCTCGACGTGGTACCGCATTCGGC
GGCGAACGAGCGCTTATTCAGCGCTTTGGGGTTCTTGACGGACAAGCGCC
GCCACGGCTTGAAGCTCGAGACGCTGCAGCAGATGCAGGCGGTCCAGATG
CATTACCAGTCGCTGGTGCCAACCATCGATCAGAAAGGGCCGCAGCGAAA
GAAACCAAAGGGAGGCGCCGCCGGCGCGGGAAAGGCGCCGTCGTCGGGCG
GAGCTTCCACCGCCGCGGCAACTGCCGCAGCGACACGAGCGGCTGCAGCT
GCAATGGTGGCGGCAGGGGCTAGGGCAGCGGGGGGCGGCGGCGCAGATGC
GGCGGTAGCAGCAGAAGCGCGTGACGCGCACGATGCTGACGCGTGGCCGG
ATGCCAGTGATGATGACGGAGCCGTTGCCAGCGGCAGCGACGCCGACGGC
GAAGACGCCTTTGACGCTGAGGGCCGCGTGGACGATGATGCCGACGTCGA
CGAGCTGATGCGAGCCCTGGAGGCTCAGCATGGGACGGACGTCCATTCTG
CTCAGGCGGAGGAGGCCGCCGCTGCTGCGGTTCCAGCGGAGCTGCTGGTG
GGCGTGAGCGGCGGCACTTGGCTTGCGCCACAGGCGTTTGTTCCTCCTTC
GCCTCCAGAGACCGCCCAAGCTCTGGCAGAGATGCTTTCGACCACGTGGC
CGAGTGTCGACGCAGCCAGCGTCGTCTTCGCTAACGATTACGTGCCACCG
CCGGCACCGGTTACCGCCAACAATACGATCGGGAGCTTCTCTAGCGAGGG
TGTGGATGTGGCAGGCTTCTTTTCGCAGCCAGGCTTGTTCAAATGA
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