mRNA_P-wetherbeei_contig13512.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A836CK85_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK85_9STRA) HSP 1 Score: 217 bits (552), Expect = 8.840e-69 Identity = 114/175 (65.14%), Postives = 134/175 (76.57%), Query Frame = 1
Query: 10 EAAVLCALVAGASAFTGTPLVGVAKTA--ARGSSQVSMMA-KSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDPLGFAKTDAKMV 525
+A + LV A+AFT A+ A A SQV+MMA KSAS+PFM +P+ LDGTVPGD GFDPLGFS+W++L FLREAEIKHGRICMLA G+VA DLG+HLPGD+H + SLEAHD AVKFGAM QILL+ S FEA+ST VVQM+NGSGR+PGYFGFDPL F+K A
Sbjct: 5 KALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKA 179
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI) HSP 1 Score: 180 bits (457), Expect = 2.200e-54 Identity = 94/156 (60.26%), Postives = 114/156 (73.08%), Query Frame = 1
Query: 25 CALVAGASAFTGTPLVGVAKTAARGSSQVSMMAKSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDP 492
C+L ASA P + + A+ S KS S+PFM +P LDGT+ GDAGFDPLGFS++I L FLREAE+KHGRIC LA +G+ ATDLG LPG HA++S+ AHDAAV GAMPQILL++SAFEA+ST AV+QM+ GSGR PG FGFDP
Sbjct: 7 CSLAVLASASAFVPPAQLPRVASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDFLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDP 162
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A6V1QB66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QB66_HETAK) HSP 1 Score: 174 bits (441), Expect = 4.710e-52 Identity = 98/174 (56.32%), Postives = 121/174 (69.54%), Query Frame = 1
Query: 10 EAAVLCALVAGASAFTGTPLVG---VAKTAARGSSQVSMMA-KSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDPLGFAKTDAK 519
+ A AL AGA AF P+ G VAKT +MMA KSA++PFM +P LD ++PG AGFDP+GFSDW+ + +LREAEIKHGRICMLA +GY+ATD+G+HLPGDMH SL AHD A+K GAM Q+L+ I E A+ + + GSGR PG FGFDPLGF+KT K
Sbjct: 3 KVAAFAALFAGADAFVA-PMDGPKNVAKT--------TMMAEKSAALPFMPKPANLDESLPGYAGFDPVGFSDWLSVDWLREAEIKHGRICMLAVVGYIATDMGLHLPGDMHNYDSLLAHDQAIKNGAMQQLLMGIGWAETFGFLAIGETMRGSGRAPGDFGFDPLGFSKTPEK 167
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: W7T6P5_9STRA (Light-harvesting protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6P5_9STRA) HSP 1 Score: 174 bits (441), Expect = 3.400e-51 Identity = 91/147 (61.90%), Postives = 112/147 (76.19%), Query Frame = 1
Query: 85 TAARGSSQVSMMA-KSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDPLGFAKTDAKM 522
T ARG+ VSMMA KS S+PF+ RP ALDGT PGD GFDP+GF+ W+ L +L+EAEIKH RI MLA LG++ D VHLPGD+HA+SSL AHD AVK GA+ QIL++ S EA+S A+ QM+ GSGR+PG F FDPLGFAK + +
Sbjct: 93 TRARGA--VSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTL 236
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A4D9CSZ5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSZ5_9STRA) HSP 1 Score: 171 bits (434), Expect = 5.090e-51 Identity = 96/165 (58.18%), Postives = 120/165 (72.73%), Query Frame = 1
Query: 31 LVAGASAFTGTPLVGVAKTAARGSSQVSMMA-KSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDPLGFAKTDAKM 522
L+ A+AF PL+ A T RG+ VSMMA KS S+PF+ RP ALDGT GD GFDP+GF+ W+ L +L+EAEIKH RI MLA LG++ D VHLPGD+HA+SSL AHD AVK GA+ QIL++ S EA+S A+ QM+ GSGR+PG F FDPLGFAK + +
Sbjct: 9 LIGAAAAFV--PLM-PATTRTRGA--VSMMAEKSKSIPFLPRPPALDGTAAGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLGFAKDEQTL 167
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A7S4ETT6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ETT6_CHRCT) HSP 1 Score: 168 bits (425), Expect = 2.270e-49 Identity = 92/169 (54.44%), Postives = 119/169 (70.41%), Query Frame = 1
Query: 10 EAAVLCALVAGASAFTGTPLVGVAKTAARGSSQVSMMAKSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNG-SGREPGYFGFDPLGFAKTD 513
+ A + +LV+G+ AFT V +T A + M KS ++PF+ PKALDG++ GD GFDPL SD +DLKF+REAE+KHGRICMLAWLGYV DLG+ PG ++SSL AHD AVK GAM +L+ +S FEA+STPAV +M++G S R+PG F DP G+AK D
Sbjct: 24 QQATMLSLVSGSLAFTAPLTPAVTQTRAHAPN----MLKSQALPFVEAPKALDGSMVGDVGFDPLNLSDGLDLKFMREAELKHGRICMLAWLGYVVVDLGITAPG-APSVSSLAAHDTAVKEGAMYLLLMLVSGFEAISTPAVYEMMSGQSDRKPGDFQLDPFGWAKGD 187
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A0G4FMW2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FMW2_VITBC) HSP 1 Score: 166 bits (419), Expect = 2.600e-48 Identity = 81/128 (63.28%), Postives = 100/128 (78.12%), Query Frame = 1
Query: 127 SASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDPLGFAKT 510
S S+PFM RP LDGT+ D GFDP GFS+W+DL++ REAEIKHGR+CMLA +GY+ + LPG++H +SSLEAH+ AV++GAM QILL+IS E ST AVVQM +GSGR+PG FGFDPLGF K
Sbjct: 69 SKSIPFMPRPYRLDGTMAADDGFDPFGFSNWLDLRWAREAEIKHGRLCMLATVGYIFAEY-FKLPGEVHQVSSLEAHNKAVEYGAMSQILLWISFAEIFSTIAVVQMYDGSGRQPGEFGFDPLGFCKN 195
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: F0Y5A3_AURAN (Putative plastid light harvesting protein isoform 33 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5A3_AURAN) HSP 1 Score: 162 bits (410), Expect = 2.180e-47 Identity = 91/170 (53.53%), Postives = 112/170 (65.88%), Query Frame = 1
Query: 19 VLCALVAGASAFTGTPLVGVAKTAARGSSQVSMMAKSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMV-NGSGREPGYFGFDPLGFAKTDAKMV 525
VL +L A ASA V AK+A + Q S ++PFM +P+ALDGT GD GFDP GF+ D+K+LREAEIKHGRICMLAW G+VATDLG LPGDMH +SS+ AHD A K+GAM Q+ L++S E + + V QM+ GS REPG +G DPL F T K
Sbjct: 6 VLISLAASASALVAP--VPAAKSAVAMNYQA-----SEALPFMEKPEALDGTYAGDVGFDPFGFTSIFDVKWLREAEIKHGRICMLAWTGFVATDLGFTLPGDMHQVSSVLAHDVACKYGAMQQLFLWLSFTEVILSAGVAQMMWMGSPREPGDYGLDPLDFCSTPEKKA 168
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A6J4B112_9STRA (Fucoxanthin chlorophyll a/c protein 6 n=1 Tax=Chaetoceros gracilis TaxID=184592 RepID=A0A6J4B112_9STRA) HSP 1 Score: 159 bits (402), Expect = 4.220e-46 Identity = 94/175 (53.71%), Postives = 121/175 (69.14%), Query Frame = 1
Query: 16 AVLCALVAGASAFTGTPLVGVAKTAARGSSQVSMMAKSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVH---LPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMV-NGSGREPGYFGFDPLGF--AKTDAKM 522
A+L +L+A A+AF + G AAR S+ + KS ++PF+ P+ L G V GDAGFDP FSD+ + FLREAEIKHGRICMLAWLG+VA DLG LP L+++ AHDA V+ GAM QI L+ S FEA+ST +V+QM+ SGREPGYFGFDPLGF K++A++
Sbjct: 4 ALLASLIASAAAFAPSSSTG----AARASTALDAGKKSQALPFLPYPENLAGYV-GDAGFDPFRFSDFAPMDFLREAEIKHGRICMLAWLGFVAVDLGARIYPLPEAYEGLTAVTAHDALVQQGAMSQIFLWCSVFEAISTVSVIQMLYEESGREPGYFGFDPLGFLNGKSEAEV 173
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Match: A0A7S3ZSN9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSN9_9STRA) HSP 1 Score: 158 bits (400), Expect = 8.220e-46 Identity = 82/156 (52.56%), Postives = 114/156 (73.08%), Query Frame = 1
Query: 28 ALVAGASAFTGTPLVGVAKTAARGSSQVSMMAKSASVPFMARPKALDGTVPGDAGFDPLGFSDWIDLKFLREAEIKHGRICMLAWLGYVATDLGVHLPGDMHALSSLEAHDAAVKFGAMPQILLFISAFEAVSTPAVVQMVNGSGREPGYFGFDPL 495
AL AGASA V A + S++VS + +S ++PF+ RP+ L G V GD GFDPLG SDW+ +++LRE+E+KHGR+CMLA +G+VATDLG LPG+MH ++S+ AHD AV GAM QI ++I+ E + A+++M++GSGR+PG FGFDPL
Sbjct: 13 ALAAGASALMAP--VXXXXXATQLSAEVSSVERSPAMPFLPRPQKLKGMV-GDKGFDPLGLSDWVPVEWLRESELKHGRVCMLAVVGFVATDLGFRLPGEMHNVASINAHDMAVDMGAMTQIGIWIAVAECIGYLAILEMLDGSGRQPGDFGFDPL 165 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13512.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig13512.1.1 >prot_P-wetherbeei_contig13512.1.1 ID=prot_P-wetherbeei_contig13512.1.1|Name=mRNA_P-wetherbeei_contig13512.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp MKCEAAVLCALVAGASAFTGTPLVGVAKTAARGSSQVSMMAKSASVPFMAback to top mRNA from alignment at P-wetherbeei_contig13512:143..1812+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig13512.1.1 ID=mRNA_P-wetherbeei_contig13512.1.1|Name=mRNA_P-wetherbeei_contig13512.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1670bp|location=Sequence derived from alignment at P-wetherbeei_contig13512:143..1812+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig13512:143..1812+ >mRNA_P-wetherbeei_contig13512.1.1 ID=mRNA_P-wetherbeei_contig13512.1.1|Name=mRNA_P-wetherbeei_contig13512.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig13512:143..1812+ (Phaeothamnion wetherbeei SAG_119_79)back to top |