mRNA_P-wetherbeei_contig13505.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13505.2.1
Unique NamemRNA_P-wetherbeei_contig13505.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13505.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13505contigP-wetherbeei_contig13505:1293..1793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size501
Hectar predicted targeting categoryother localisation
Exons1
Cds size474
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185988.3789382-UTR-P-wetherbeei_contig13505:1292..13191683185988.3789382-UTR-P-wetherbeei_contig13505:1292..1319Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13505 1293..1319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185988.3919291-CDS-P-wetherbeei_contig13505:1319..17931683185988.3919291-CDS-P-wetherbeei_contig13505:1319..1793Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13505 1320..1793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13505.2.1prot_P-wetherbeei_contig13505.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13505 1320..1793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13505.2.1

>prot_P-wetherbeei_contig13505.2.1 ID=prot_P-wetherbeei_contig13505.2.1|Name=mRNA_P-wetherbeei_contig13505.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
ANPSGGKRGGGAGRRAAWRGREEAANDSRRQARAATAKRGSKGGSKAAPA
AASTTIRAFAAAAITSRGRHLLEHLQVLRLASHACHWLENGKHRHKLLSL
HYTVGSKCADAFTIEPCGSGERRWRKTWKEKRAKYPAFGRKRDVSASSHP
APILFRS*
back to top

mRNA from alignment at P-wetherbeei_contig13505:1293..1793-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13505.2.1 ID=mRNA_P-wetherbeei_contig13505.2.1|Name=mRNA_P-wetherbeei_contig13505.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig13505:1293..1793- (Phaeothamnion wetherbeei SAG_119_79)
GCCAATCCAAGCGGCGGCAAGCGCGGCGGCGGGGCGGGTCGAAGGGCGGC
GTGGCGCGGCAGGGAAGAAGCAGCCAATGACAGCAGGAGGCAGGCGCGGG
CGGCAACGGCGAAACGCGGCAGCAAAGGCGGTAGCAAGGCGGCACCGGCT
GCGGCGTCGACGACAATAAGAGCGTTTGCGGCGGCGGCGATTACATCTCG
AGGCCGCCACCTCTTGGAGCATCTTCAAGTATTGCGCCTCGCAAGCCATG
CATGCCACTGGCTTGAAAATGGCAAACACCGACATAAGCTGCTTTCTCTC
CACTATACTGTGGGCAGCAAGTGCGCTGACGCCTTCACGATTGAACCATG
CGGCAGCGGGGAGCGGAGGTGGAGGAAGACGTGGAAGGAAAAGAGAGCGA
AATATCCGGCTTTTGGTAGGAAGCGCGACGTTTCTGCCTCGAGCCATCCG
GCACCAATATTATTCAGATCATGAAAACGTAATTAAAAATAGATCGCTCA
T
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13505:1293..1793-

>mRNA_P-wetherbeei_contig13505.2.1 ID=mRNA_P-wetherbeei_contig13505.2.1|Name=mRNA_P-wetherbeei_contig13505.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig13505:1293..1793- (Phaeothamnion wetherbeei SAG_119_79)
GCCAATCCAAGCGGCGGCAAGCGCGGCGGCGGGGCGGGTCGAAGGGCGGC
GTGGCGCGGCAGGGAAGAAGCAGCCAATGACAGCAGGAGGCAGGCGCGGG
CGGCAACGGCGAAACGCGGCAGCAAAGGCGGTAGCAAGGCGGCACCGGCT
GCGGCGTCGACGACAATAAGAGCGTTTGCGGCGGCGGCGATTACATCTCG
AGGCCGCCACCTCTTGGAGCATCTTCAAGTATTGCGCCTCGCAAGCCATG
CATGCCACTGGCTTGAAAATGGCAAACACCGACATAAGCTGCTTTCTCTC
CACTATACTGTGGGCAGCAAGTGCGCTGACGCCTTCACGATTGAACCATG
CGGCAGCGGGGAGCGGAGGTGGAGGAAGACGTGGAAGGAAAAGAGAGCGA
AATATCCGGCTTTTGGTAGGAAGCGCGACGTTTCTGCCTCGAGCCATCCG
GCACCAATATTATTCAGATCATGA
back to top