mRNA_P-wetherbeei_contig13469.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13469.1.1
Unique NamemRNA_P-wetherbeei_contig13469.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13469.1.1 vs. uniprot
Match: A0A835YL31_9STRA (Peptidase M24, structural domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL31_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.680e-28
Identity = 55/88 (62.50%), Postives = 72/88 (81.82%), Query Frame = 2 
Query:  218 CAQMFRGKVKGKPIDKGVSFPTCVSVNECICHNNPLESEADAQRPLAEGDLVKVDLGCHIDGYIAVVAHTVKVRERSGSHAAAAAAQA 481
            CAQ+F+ KVKG  ++KG++FPTC+SVNEC+C+N+PLESEA+ Q PLA+GDLVK++LGCH+ GYIAV AHTVKV     + A A  A+A
Sbjct:   71 CAQIFQKKVKGVAVEKGIAFPTCISVNECVCNNSPLESEAEQQPPLADGDLVKIELGCHVAGYIAVAAHTVKVGAAPTAEAPATGAEA 158
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BLAST of mRNA_P-wetherbeei_contig13469.1.1 vs. uniprot
Match: A0A7S1CWN6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CWN6_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 6.970e-26
Identity = 48/75 (64.00%), Postives = 65/75 (86.67%), Query Frame = 2 
Query:  218 CAQMFRGKVKGKPIDKGVSFPTCVSVNECICHNNPLESEADAQRPLAEGDLVKVDLGCHIDGYIAVVAHTVKVRE 442
            CA +++ KVKGK ++KG++FPTCVSVNEC+CHN+PLES+A+ Q  LA GD+VK+D+GC++DGYIAV AHTV + E
Sbjct:   91 CASIYQKKVKGKFVEKGIAFPTCVSVNECVCHNSPLESDAE-QPKLAPGDMVKLDVGCYVDGYIAVAAHTVVIEE 164
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BLAST of mRNA_P-wetherbeei_contig13469.1.1 vs. uniprot
Match: A0A7S2UWR2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWR2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.610e-25
Identity = 55/83 (66.27%), Postives = 63/83 (75.90%), Query Frame = 2 
Query:  224 QMFRGKVKGKPIDKGVSFPTCVSVNECICHNNPLESEADAQRPLAEGDLVKVDLGCHIDGYIAVVAHTVKVRERSGSHAAAAA 472
            Q+FR KVKG+ I+KGV+FPTCVSVNEC+CHN+PLESE   Q PL  GD+VK+DLGCHIDGYIAV AHT  V       A  AA
Sbjct:   84 QIFRNKVKGQAIEKGVAFPTCVSVNECLCHNSPLESEE--QEPLKAGDVVKIDLGCHIDGYIAVAAHTAIVGAAGDGEATGAA 164
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BLAST of mRNA_P-wetherbeei_contig13469.1.1 vs. uniprot
Match: A0A4D9D9V2_9STRA (Peptidase_M24 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9V2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.590e-24
Identity = 50/73 (68.49%), Postives = 63/73 (86.30%), Query Frame = 2 
Query:  218 CAQMFRGKVKGKPIDKGVSFPTCVSVNECICHNNPLESEADAQRPLAEGDLVKVDLGCHIDGYIAVVAHTVKV 436
            C ++F  KVKG+ I+KGV+FPTCVS+NEC+CHN+PL SEA  Q P+ EGDLVKVDLG HIDG+++VVAHTV+V
Sbjct:   75 CKKIFTKKVKGRTIEKGVAFPTCVSINECVCHNSPLASEA--QEPVKEGDLVKVDLGVHIDGFVSVVAHTVRV 145
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BLAST of mRNA_P-wetherbeei_contig13469.1.1 vs. uniprot
Match: W7TSW3_9STRA (Proliferation-associated protein 2g4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSW3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.690e-24
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 2 
Query:  218 CAQMFRGKVKGKPIDKGVSFPTCVSVNECICHNNPLESEADAQRPLAEGDLVKVDLGCHIDGYIAVVAHTVKV 436
            C ++F  KVKG+ I+KGV+FPTCVS+NEC+CHN+PL SEA  Q PL EGDLVKVDLG HIDG+++VVAHTV+V
Sbjct:   75 CKKIFTKKVKGRTIEKGVAFPTCVSINECVCHNSPLASEA--QEPLKEGDLVKVDLGVHIDGFVSVVAHTVRV 145
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BLAST of mRNA_P-wetherbeei_contig13469.1.1 vs. uniprot
Match: A0A7S1XIA0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XIA0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.220e-24
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 2 
Query:  215 SCAQMFRGKVKGKPIDKGVSFPTCVSVNECICHNNPLESEADAQRPLAEGDLVKVDLGCHIDGYIAVVAHTVKV 436
            S  +++R KV G+ I+KG++FPTCVSVNE +CH++PLES+ D  RPL EGDLVK+DLGCHIDGYIA+ AHT+ V
Sbjct:   77 STERLYRKKVNGRTIEKGIAFPTCVSVNEIVCHHSPLESDKDNLRPLEEGDLVKLDLGCHIDGYIALAAHTIVV 150
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BLAST of mRNA_P-wetherbeei_contig13469.1.1 vs. uniprot
Match: A0A7R9Y9E1_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9E1_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.580e-23
Identity = 44/74 (59.46%), Postives = 62/74 (83.78%), Query Frame = 2 
Query:  215 SCAQMFRGKVKGKPIDKGVSFPTCVSVNECICHNNPLESEADAQRPLAEGDLVKVDLGCHIDGYIAVVAHTVKV 436
            S  +++R K+ G+ ++KG++FPTCVSVNE +CH++PLES+ D  RPL +GD+VK+DLGCHIDGYIA+ AHT+ V
Sbjct:   94 STERLYRKKINGRTVEKGIAFPTCVSVNEVVCHHSPLESDKDDLRPLEDGDIVKIDLGCHIDGYIALAAHTIVV 167
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BLAST of mRNA_P-wetherbeei_contig13469.1.1 vs. uniprot
Match: F0YGQ1_AURAN (Peptidase_M24 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGQ1_AURAN)

HSP 1 Score: 108 bits (270), Expect = 5.030e-23
Identity = 46/71 (64.79%), Postives = 62/71 (87.32%), Query Frame = 2 
Query:  218 CAQMFRGKVKGKPIDKGVSFPTCVSVNECICHNNPLESEADAQRPLAEGDLVKVDLGCHIDGYIAVVAHTV 430
            C  +++ K+KGK IDKGV+FPTCVSVNEC+CHN+PLES+  ++  L+EGDLVK+D+GC++DGYIAV AHT+
Sbjct:   72 CGSIYQKKIKGKLIDKGVAFPTCVSVNECVCHNSPLESDTTSE-VLSEGDLVKLDVGCYVDGYIAVAAHTM 141
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BLAST of mRNA_P-wetherbeei_contig13469.1.1 vs. uniprot
Match: F0YNJ4_AURAN (Peptidase_M24 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNJ4_AURAN)

HSP 1 Score: 107 bits (268), Expect = 9.280e-23
Identity = 47/76 (61.84%), Postives = 63/76 (82.89%), Query Frame = 2 
Query:  218 CAQMFRGKVKGKPIDKGVSFPTCVSVNECICHNNPLESEADAQRPLAEGDLVKVDLGCHIDGYIAVVAHTVKVRER 445
            C  +++ KVKGK IDKGV+FPTCVSVNEC+CHN+PLES+A+    L +GD+VK+D+GC++DGYIAV AHT+   E+
Sbjct:   72 CGTIYQKKVKGKAIDKGVAFPTCVSVNECVCHNSPLESDANID-VLKDGDMVKLDVGCYVDGYIAVAAHTMLCGEQ 146
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BLAST of mRNA_P-wetherbeei_contig13469.1.1 vs. uniprot
Match: A0A6V1VMS0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VMS0_HETAK)

HSP 1 Score: 107 bits (266), Expect = 1.900e-22
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 2 
Query:  215 SCAQMFRGKVKGKPIDKGVSFPTCVSVNECICHNNPLESEADAQRPLAEGDLVKVDLGCHIDGYIAVVAHTVKV 436
            SCAQ+FR     K ++KG++FPTCVSVNEC+CHN+PLESE   Q PL  GD+VKVD+GCHIDGYIAV AHT  V
Sbjct:   77 SCAQVFR----SKSVEKGIAFPTCVSVNECVCHNSPLESEE--QPPLENGDMVKVDVGCHIDGYIAVTAHTFVV 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13469.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YL31_9STRA1.680e-2862.50Peptidase M24, structural domain-containing protei... [more]
A0A7S1CWN6_9CHLO6.970e-2664.00Hypothetical protein (Fragment) n=1 Tax=Picochloru... [more]
A0A7S2UWR2_9STRA5.610e-2566.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D9V2_9STRA1.590e-2468.49Peptidase_M24 domain-containing protein n=2 Tax=Mo... [more]
W7TSW3_9STRA3.690e-2469.86Proliferation-associated protein 2g4 n=1 Tax=Nanno... [more]
A0A7S1XIA0_9STRA4.220e-2464.86Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9Y9E1_9STRA2.580e-2359.46Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
F0YGQ1_AURAN5.030e-2364.79Peptidase_M24 domain-containing protein n=1 Tax=Au... [more]
F0YNJ4_AURAN9.280e-2361.84Peptidase_M24 domain-containing protein n=1 Tax=Au... [more]
A0A6V1VMS0_HETAK1.900e-2267.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13469contigP-wetherbeei_contig13469:217..1774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009039553.1
Preferred nameARX1
PFAMsPeptidase_M24
Model size1020
Max annot lvl2759|Eukaryota
KEGG rclassRC00020
KEGG koko:K01265,ko:K04040,ko:K14813
KEGG ReactionR06284,R09067,R11514,R11517
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0001558,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005886,GO:0006355,GO:0006403,GO:0006405,GO:0006508,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007049,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009735,GO:0009755,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010941,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022402,GO:0022613,GO:0023052,GO:0030684,GO:0030687,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031625,GO:0031974,GO:0031981,GO:0032870,GO:0032991,GO:0033036,GO:0033750,GO:0034613,GO:0040008,GO:0042221,GO:0042254,GO:0042273,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044238,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044770,GO:0044843,GO:0045184,GO:0045595,GO:0045597,GO:0045892,GO:0045934,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051302,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0060548,GO:0065007,GO:0070011,GO:0070013,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071365,GO:0071426,GO:0071428,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0140096,GO:0140110,GO:1901363,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue2.69e-25
EggNOG OGsCOG0024@1|root,KOG2776@2759|Eukaryota
EC2.5.1.133,2.5.1.62,3.4.11.18
DescriptionProliferation-associated protein
Cds size285
COG categoryJ
BRITEko00000,ko00001,ko01000,ko01002,ko01006,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.7280293-UTR-P-wetherbeei_contig13469:216..4421683185986.7280293-UTR-P-wetherbeei_contig13469:216..442Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13469 217..442 +
1683185986.763948-UTR-P-wetherbeei_contig13469:1265..17741683185986.763948-UTR-P-wetherbeei_contig13469:1265..1774Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13469 1266..1774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.7405035-CDS-P-wetherbeei_contig13469:442..5621683185986.7405035-CDS-P-wetherbeei_contig13469:442..562Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13469 443..562 +
1683185986.7549443-CDS-P-wetherbeei_contig13469:1100..12651683185986.7549443-CDS-P-wetherbeei_contig13469:1100..1265Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13469 1101..1265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13469.1.1prot_P-wetherbeei_contig13469.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13469 443..1265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13469.1.1

>prot_P-wetherbeei_contig13469.1.1 ID=prot_P-wetherbeei_contig13469.1.1|Name=mRNA_P-wetherbeei_contig13469.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
MFRGKVKGKPIDKGVSFPTCVSVNECICHNNPLESEADAQRPLAEGDLVK
VDLGCHIDGYIAVVAHTVKVRERSGSHAAAAAAQAPQAATAQAA*
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mRNA from alignment at P-wetherbeei_contig13469:217..1774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13469.1.1 ID=mRNA_P-wetherbeei_contig13469.1.1|Name=mRNA_P-wetherbeei_contig13469.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1558bp|location=Sequence derived from alignment at P-wetherbeei_contig13469:217..1774+ (Phaeothamnion wetherbeei SAG_119_79)
GCTTGCCTCACGTTTCCTTTCGCTGTGGCTCTGCTTGCCTCACGTTTCCT
TTCGGATCCTTTCTGATCCTTCTGATGTCGCGGCATTCGTTAAACGGTGG
CGGCGCTGTCAATGGCGGCGCTTTTTGGCGGCGGCTGCGGCTTTGGCGGG
ACGGCGGATTTGGGGGCGATGCGACGGACCGACGCGGCATGGTTGGCATC
ATCTGGGCCGCGGCAGCTGCGCCCAGATGTTCCGGGGCAAGGTGAAGGGC
AAGCCGATTGACAAGGGCGTGTCGTTCCCGACGTGCGTCTCTGTCAACGA
GTGCATCTGTCACAACAACCCCCTCGAGTCTGAGGCCGACGCGCAAGTGA
GATACAGAGTCTTTCACTTATTTTCGCTGTCCTCTTTCTTTCTTCCTTTC
TGCCGTTTTTTCTCTCCTCCTCCTCCTCCTGTTCTTTCTGTTTGCCTCCC
TCCTTTCTTCCCTTGACTTTTCTCCCTATTTGTCAAAGATATTGCTCGCT
GTTCGGCTGGCTCGCTGTTCGGCTGGCGGCTGATCCAGCGTACCCAAAAC
TTTACGGTTGTCCTGCCACCATATCGTTTATGCCGCGTGCGATTTTGTTT
CTTCTCTCTGTGTCTTCTTTGCATGAGCGTAATCTGCATTTCAATAGCTA
AGTCGATTTTCTATTTCGTAAGCAAACTCCACAACTGTTTTCGAAATGCA
TTGCTCCTCTCCTTGCCTCCCTCTTCGACGTGCGACGCTTTTTCATCGCC
TCCGCACCGCATCGCGCCTTATCACCCCGCGCGTCTCTGCCTCTCATGCC
CCAATCACCTTACCCGCTGTTTCCCATCCGTGATCCATTGCTGGTTCGGT
CAAAATGCGCCATTAACACTTTACACACCGGCAGCGGCCGCTGGCGGAGG
GCGATCTGGTGAAGGTGGACCTGGGGTGCCACATAGACGGATACATTGCT
GTTGTGGCACACACCGTCAAGGTGAGGGAACGGAGTGGGAGCCACGCCGC
GGCGGCGGCGGCACAGGCGCCGCAAGCGGCGACGGCACAGGCGGCATAGG
CAGCAGCTGCGCAGGCAGCTCAGCGACTGGCCGGTGGGGCCGCTGGTGCA
CGCGCGACGGCTTGCAGCGGCGATGGCGGCGTAGGCGCGGCTGTGGCGAC
GTGGGCGCGGCGGTGGTGGTGTAGACGGCTCGGGCGACGGCGGCGGCAAC
TATGCCGGCCGCAGCGGTGATGGCGGGGGCAGCGGCAGCGGCAGCAATGG
TGCGGCAGCGATAGCGGCAGTTCTTTTATTGCAAGGCGGCTGCGGTAGTT
GCCGGTGGTTGGGTGGCACGACCAGCGCACAAAAGCGTAGGCTTGTGGAG
ATGCGGTAGTGTTGCGGTAGTGTCGTGGCGTGTCCTTTGTCTTGACCACA
CGTCGCTCGACTCTGCATGATCTCCGTCCCCCGATGCGGCGCACAAACGG
TCCGCCGGTGTACCATGTGCAGGTGGGCCACGCGTTCTCCCCGGCGGCGC
CGCTGACGGGACGGGAGGCGGAGGTGCTGCAGGCGTGTTATACAGCGGCC
GAAGTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13469:217..1774+

>mRNA_P-wetherbeei_contig13469.1.1 ID=mRNA_P-wetherbeei_contig13469.1.1|Name=mRNA_P-wetherbeei_contig13469.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig13469:217..1774+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCGGGGCAAGGTGAAGGGCAAGCCGATTGACAAGGGCGTGTCGTT
CCCGACGTGCGTCTCTGTCAACGAGTGCATCTGTCACAACAACCCCCTCG
AGTCTGAGGCCGACGCGCAACGGCCGCTGGCGGAGGGCGATCTGGTGAAG
GTGGACCTGGGGTGCCACATAGACGGATACATTGCTGTTGTGGCACACAC
CGTCAAGGTGAGGGAACGGAGTGGGAGCCACGCCGCGGCGGCGGCGGCAC
AGGCGCCGCAAGCGGCGACGGCACAGGCGGCATAG
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