mRNA_P-wetherbeei_contig13427.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13427.1.1
Unique NamemRNA_P-wetherbeei_contig13427.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13427.1.1 vs. uniprot
Match: A0A6H5JZS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZS7_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.140e-21
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    1 QVNWGIAHLDLSFNEVSPRGVMVLAQALEQNNGLASLALHGNHIAFDGARMLVRSLNYWPIRRRLGLDNCSLGSE 225
            +VN G+  LDLS+NE+SP G +V+AQALE N+ L +L L GN I F+G R LVRSLNYW + R LGL NC L S 
Sbjct:  179 KVNDGLVCLDLSYNEISPTGALVIAQALENNDRLETLRLDGNSIGFNGGRTLVRSLNYWTLSRTLGLKNCMLESR 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13427.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZS7_9PHAE9.140e-2158.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13427contigP-wetherbeei_contig13427:440..673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008863668.1
PFAMsLRR_6
Model size234
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.96e-05
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size234
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.8346663-CDS-P-wetherbeei_contig13427:439..6731683185984.8346663-CDS-P-wetherbeei_contig13427:439..673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13427 440..673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13427.1.1prot_P-wetherbeei_contig13427.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13427 440..673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13427.1.1

>prot_P-wetherbeei_contig13427.1.1 ID=prot_P-wetherbeei_contig13427.1.1|Name=mRNA_P-wetherbeei_contig13427.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
QVNWGIAHLDLSFNEVSPRGVMVLAQALEQNNGLASLALHGNHIAFDGAR
MLVRSLNYWPIRRRLGLDNCSLGSEGAA
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mRNA from alignment at P-wetherbeei_contig13427:440..673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13427.1.1 ID=mRNA_P-wetherbeei_contig13427.1.1|Name=mRNA_P-wetherbeei_contig13427.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig13427:440..673+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTCAACTGGGGCATCGCCCACCTGGATCTGAGCTTCAACGAGGTCTC
CCCCCGAGGCGTCATGGTTCTGGCGCAGGCTTTGGAGCAGAATAATGGCC
TGGCCAGCCTGGCGCTGCACGGCAACCACATTGCGTTCGACGGCGCCCGC
ATGCTCGTCCGGAGCCTCAACTATTGGCCCATCCGCCGCCGCCTGGGTCT
CGACAACTGCTCGCTCGGCAGCGAAGGCGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13427:440..673+

>mRNA_P-wetherbeei_contig13427.1.1 ID=mRNA_P-wetherbeei_contig13427.1.1|Name=mRNA_P-wetherbeei_contig13427.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig13427:440..673+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTCAACTGGGGCATCGCCCACCTGGATCTGAGCTTCAACGAGGTCTC
CCCCCGAGGCGTCATGGTTCTGGCGCAGGCTTTGGAGCAGAATAATGGCC
TGGCCAGCCTGGCGCTGCACGGCAACCACATTGCGTTCGACGGCGCCCGC
ATGCTCGTCCGGAGCCTCAACTATTGGCCCATCCGCCGCCGCCTGGGTCT
CGACAACTGCTCGCTCGGCAGCGAAGGCGCCGCC
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