mRNA_P-wetherbeei_contig1342.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1342.3.1
Unique NamemRNA_P-wetherbeei_contig1342.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1342.3.1 vs. uniprot
Match: A0A836C948_9STRA (BRCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C948_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.850e-5
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:  781 GSTPAVVALTGLDSETRRTVSDVVAGLAKKRRDDSCLAANGDPAAPFTHLVVPAADYGKRTMKVLFALCHNVPVVSMEWVFASLELGAWAD 1053
            GS   +VA++GL +  +  ++ +V  L    R    +   G   A  THL+VP  +  +RT+KVLFA+C  VPVV+  W++ S   G W D
Sbjct: 1094 GSGRFLVAMSGLGAGDKLQLASIVEELG---RGGKAVLVAGTDGALCTHLIVPERE-PRRTLKVLFAMCRGVPVVTTRWLYESHAAGRWLD 1180
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1342.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C948_9STRA3.850e-536.26BRCT domain-containing protein n=1 Tax=Tribonema m... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1342contigP-wetherbeei_contig1342:1685..3057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65071.PYU1_T003003
PFAMsBRCT,BRCT_2
Model size1200
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.87e-05
EggNOG OGsKOG4362@1|root,KOG4362@2759|Eukaryota,1MJ14@121069|Pythiales
DescriptionBRCT domain, a BRCA1 C-terminus domain
Cds size1197
COG categoryKL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.5825057-CDS-P-wetherbeei_contig1342:1685..18681683185984.5825057-CDS-P-wetherbeei_contig1342:1685..1868Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1342 1686..1868 -
1683185984.592719-CDS-P-wetherbeei_contig1342:2043..30571683185984.592719-CDS-P-wetherbeei_contig1342:2043..3057Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1342 2044..3057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1342.3.1prot_P-wetherbeei_contig1342.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1342 1686..3057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1342.3.1

>prot_P-wetherbeei_contig1342.3.1 ID=prot_P-wetherbeei_contig1342.3.1|Name=mRNA_P-wetherbeei_contig1342.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=399bp
GGHSSAGGTPASAGKDGKAASSGSSGKLAAAVKGGLAASAGGSGKAGKAA
SAGGSGKAVSAGCSGKAAGGSGKSESIGSQLKAADGVAAAADAKNIPPAA
SGGAAAKKMKRKGRDDASNSAASEEDAPRRRGKRACQATDESLNRGTAGG
GGSSGGGSKEVDAIPTGRARKQERSFWFMAEADAGGNGDDAGAGKAGSKR
ARKEPPEASAAAAAATTATVTAVASASAATSGNAATTGRAAATAAKAALG
SAGERPRPAAGSTPAVVALTGLDSETRRTVSDVVAGLAKKRRDDSCLAAN
GDPAAPFTHLVVPAADYGKRTMKVLFALCHNVPVVSMEWVFASLELGAWA
DPTQFAVLAFQQTPSRRGGSDSNGGSGSSAGRGSNGGGGARNSVLCKET
back to top

mRNA from alignment at P-wetherbeei_contig1342:1685..3057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1342.3.1 ID=mRNA_P-wetherbeei_contig1342.3.1|Name=mRNA_P-wetherbeei_contig1342.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1373bp|location=Sequence derived from alignment at P-wetherbeei_contig1342:1685..3057- (Phaeothamnion wetherbeei SAG_119_79)
GGTGGCCACAGCAGTGCTGGCGGTACGCCTGCCAGTGCCGGCAAAGACGG
CAAGGCTGCCAGCTCTGGCAGCAGCGGCAAGCTTGCCGCCGCCGTCAAAG
GCGGCTTGGCTGCCAGCGCCGGCGGCAGCGGCAAGGCTGGCAAGGCTGCC
AGCGCCGGCGGCAGCGGCAAGGCTGTCAGCGCCGGCTGCAGTGGCAAGGC
TGCTGGCGGCAGCGGCAAGTCGGAGAGTATCGGCAGCCAGCTCAAGGCAG
CCGACGGCGTCGCGGCCGCCGCAGATGCGAAGAATATACCGCCGGCTGCT
TCCGGAGGAGCCGCGGCGAAGAAGATGAAGCGGAAGGGGCGCGACGATGC
TTCCAACTCTGCCGCGTCCGAGGAGGATGCGCCGCGCCGCCGCGGGAAGC
GCGCCTGCCAGGCGACCGACGAGAGCCTAAACCGCGGGACGGCTGGCGGT
GGCGGCAGCAGCGGCGGCGGCAGCAAGGAGGTCGATGCGATACCCACGGG
GCGTGCGAGGAAGCAGGAGAGAAGCTTCTGGTTCATGGCGGAAGCGGACG
CCGGCGGCAATGGTGATGACGCGGGGGCTGGGAAGGCGGGCAGCAAGCGA
GCGAGGAAGGAGCCGCCGGAGGCCTCCGCCGCCGCAGCTGCTGCGACAAC
TGCAACGGTGACGGCGGTCGCCAGCGCATCGGCAGCTACTTCGGGAAACG
CGGCGACGACGGGCAGGGCAGCAGCCACGGCGGCCAAGGCGGCATTGGGC
AGCGCCGGCGAGCGCCCGCGGCCGGCTGCGGGCTCGACACCCGCCGTGGT
GGCGCTGACGGGCCTTGACTCAGAGACGCGCCGCACCGTGAGCGATGTGG
TGGCAGGGCTGGCCAAGAAGCGGCGGGACGACTCTTGCCTGGCGGCGAAC
GGCGACCCGGCAGCGCCCTTCACGCACCTGGTGGTGCCCGCCGCCGACTA
CGGCAAGCGCACGATGAAGGTGCTGTTCGCGCTGTGCCACAACGTCCCCG
TCGTCTCCATGGAGGTGCGAGGGAAGGAGTGGCACAAATTTATGGATGGC
GAGGTTGCATGAAGGAAGAAGTCGCTGTAGAGCGTTTGCAGGCGCAGCAT
TTTGTAGCTTTTCTGCCCTCTTGGTCCTTACCACCATCACACCTGCCTTC
CTTCCTTCCGTCACCCGTCTGCCCTTTTGTCGCCGGCAGTGGGTCTTCGC
CAGCTTGGAGCTCGGCGCGTGGGCTGACCCCACACAATTTGCCGTGCTGG
CCTTCCAGCAGACTCCGAGCCGACGCGGCGGCAGTGACAGCAACGGTGGC
AGCGGCAGCAGCGCTGGCCGCGGCAGCAACGGCGGCGGAGGCGCCAGGAA
CAGCGTGCTCTGCAAGGAGACGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1342:1685..3057-

>mRNA_P-wetherbeei_contig1342.3.1 ID=mRNA_P-wetherbeei_contig1342.3.1|Name=mRNA_P-wetherbeei_contig1342.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1197bp|location=Sequence derived from alignment at P-wetherbeei_contig1342:1685..3057- (Phaeothamnion wetherbeei SAG_119_79)
GGTGGCCACAGCAGTGCTGGCGGTACGCCTGCCAGTGCCGGCAAAGACGG
CAAGGCTGCCAGCTCTGGCAGCAGCGGCAAGCTTGCCGCCGCCGTCAAAG
GCGGCTTGGCTGCCAGCGCCGGCGGCAGCGGCAAGGCTGGCAAGGCTGCC
AGCGCCGGCGGCAGCGGCAAGGCTGTCAGCGCCGGCTGCAGTGGCAAGGC
TGCTGGCGGCAGCGGCAAGTCGGAGAGTATCGGCAGCCAGCTCAAGGCAG
CCGACGGCGTCGCGGCCGCCGCAGATGCGAAGAATATACCGCCGGCTGCT
TCCGGAGGAGCCGCGGCGAAGAAGATGAAGCGGAAGGGGCGCGACGATGC
TTCCAACTCTGCCGCGTCCGAGGAGGATGCGCCGCGCCGCCGCGGGAAGC
GCGCCTGCCAGGCGACCGACGAGAGCCTAAACCGCGGGACGGCTGGCGGT
GGCGGCAGCAGCGGCGGCGGCAGCAAGGAGGTCGATGCGATACCCACGGG
GCGTGCGAGGAAGCAGGAGAGAAGCTTCTGGTTCATGGCGGAAGCGGACG
CCGGCGGCAATGGTGATGACGCGGGGGCTGGGAAGGCGGGCAGCAAGCGA
GCGAGGAAGGAGCCGCCGGAGGCCTCCGCCGCCGCAGCTGCTGCGACAAC
TGCAACGGTGACGGCGGTCGCCAGCGCATCGGCAGCTACTTCGGGAAACG
CGGCGACGACGGGCAGGGCAGCAGCCACGGCGGCCAAGGCGGCATTGGGC
AGCGCCGGCGAGCGCCCGCGGCCGGCTGCGGGCTCGACACCCGCCGTGGT
GGCGCTGACGGGCCTTGACTCAGAGACGCGCCGCACCGTGAGCGATGTGG
TGGCAGGGCTGGCCAAGAAGCGGCGGGACGACTCTTGCCTGGCGGCGAAC
GGCGACCCGGCAGCGCCCTTCACGCACCTGGTGGTGCCCGCCGCCGACTA
CGGCAAGCGCACGATGAAGGTGCTGTTCGCGCTGTGCCACAACGTCCCCG
TCGTCTCCATGGAGTGGGTCTTCGCCAGCTTGGAGCTCGGCGCGTGGGCT
GACCCCACACAATTTGCCGTGCTGGCCTTCCAGCAGACTCCGAGCCGACG
CGGCGGCAGTGACAGCAACGGTGGCAGCGGCAGCAGCGCTGGCCGCGGCA
GCAACGGCGGCGGAGGCGCCAGGAACAGCGTGCTCTGCAAGGAGACG
back to top