mRNA_P-wetherbeei_contig1340.1.7 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1340.1.7
Unique NamemRNA_P-wetherbeei_contig1340.1.7
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1340.1.7 vs. uniprot
Match: A0A835Z1N5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N5_9STRA)

HSP 1 Score: 160 bits (406), Expect = 5.450e-39
Identity = 86/124 (69.35%), Postives = 99/124 (79.84%), Query Frame = 1 
Query:  457 TALSLKVEAELLGYYDELVPGPGPGARAARPLRINVDLLSYQQARQAVQRGEVAEGVALYKRCVELDPRDGRGWLGLAQHEARRRDYAKARALYETGLRNSPDNPYLLQASAGGLGDAYGVMEE 828
            T LSLKVEAELLG YDELVPGP PG RA RPL IN+DLLSY+ A+QA+  G+  E V LYKRCVELDPRDGRGW+GLA++E ++ + A+ARAL+ETGL NSPDNPYLLQA        YGVMEE
Sbjct:    1 TELSLKVEAELLGQYDELVPGPMPGQRA-RPLPINLDLLSYK-AKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQA--------YGVMEE 114
[Close]
BLAST of mRNA_P-wetherbeei_contig1340.1.7 vs. uniprot
Match: A0A7S4DG14_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG14_HETAK)

HSP 1 Score: 155 bits (392), Expect = 1.380e-37
Identity = 84/155 (54.19%), Postives = 105/155 (67.74%), Query Frame = 1 
Query:  448 VNRTALSLKVEAELLGYYDELVPGPGPGARAARPLRINVDLLSYQQARQAVQRGEVAEGVALYKRCVELDPRDGRGWLGLAQHEARRRDYAKARALYETGLRNSPDNPYLLQASAGGLGDAYGVMEERLGNQRRAQELYVLATKVDPTHAASWVA 912
            +N T LS KV +EL+  YDE VPGP P    AR L IN+DL++Y  ARQA+ +G+ A G+ +YK+C+ELDPRDGR WL LA+HE+RR+ +  A  L+  GL  S  NPYLLQA        YGVMEE+ GN  +A ELY  AT  DP HAAS+VA
Sbjct:  113 LNSTTLSKKVYSELMSTYDEQVPGPDPSKPPARALPINLDLMTYH-ARQAMIKGDEAVGLRIYKKCLELDPRDGRAWLALARHESRRKRFEVAEKLFLKGLTYSRGNPYLLQA--------YGVMEEQRGNSVKALELYSKATLADPKHAASYVA 258
[Close]
BLAST of mRNA_P-wetherbeei_contig1340.1.7 vs. uniprot
Match: D7FP63_ECTSI (PsbB mRNA maturation factor Mbb1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP63_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 5.710e-35
Identity = 92/195 (47.18%), Postives = 112/195 (57.44%), Query Frame = 1 
Query:  373 LLSARQPSSGGARLQLDDTGHGVLLVNRTALSLKVEAELLGYYDELVPGP----------GPGA---RAARPLRINVDLLSYQQARQAVQRGEVAEGVALYKRCVELDPRDGRGWLGLAQHEARRRDYAKARALYETGLRNSPDNPYLLQASAGGLGDAYGVMEERLGNQRRAQELYVLATKVDPTHAASWVALG 918
            +LS + P +G A              N+T LS KVEAEL   YD +VPGP          G GA   R  RPL+IN+DLLSYQ A+Q   +G   E   LY+ CVELDPRDGRGWLGLA+   +   Y KA+ L+E GL N  DNPYLLQA        + VMEE+ GNQ +A  L   + ++ P H ASWVALG
Sbjct:  279 ILSQKSPPAGSAAAS-----------NKTELSAKVEAELFEEYDAMVPGPAASAVGNNAGGDGAGQERTGRPLKINLDLLSYQ-AKQKNMKGNYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQA--------FAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALG 453
[Close]
BLAST of mRNA_P-wetherbeei_contig1340.1.7 vs. uniprot
Match: A0A7S2XUS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.750e-24
Identity = 68/171 (39.77%), Postives = 95/171 (55.56%), Query Frame = 1 
Query:  499 YDELVPGPGPGARA---------ARPLRINVDLLSYQQARQAVQRGEVAEGVALYKRCVELDPRDGRGWLGLAQHEAR----------------------RRDYAKARALYETGLRNSPDNPYLLQASAGGLGDAYGVMEERLGNQRRAQELYVLATKVDPTHAASWVALG 918
            +D  +PGP  G  +          RP+ ++ DLL++Q A+QA++   V    ALY+RC++L+PRD R WLGLA+ E R                        +Y KA+ +Y+ GLR  P+NPYLLQ    GL    GV+EE+ GN++ A  LY+ A + DP HAASWVA G
Sbjct:    7 FDVQIPGPDAGGISPVVQKPPVKTRPVGLHFDLLAHQ-AKQALRNKNVTLAAALYRRCLQLNPRDARAWLGLARIETRGGVPLPTKGNAEGPGKPRHWSSHLNYVKAKEIYQQGLRRCPNNPYLLQ----GL----GVLEEKKGNKQVAMGLYIRACQSDPQHAASWVARG 168
[Close]
BLAST of mRNA_P-wetherbeei_contig1340.1.7 vs. uniprot
Match: A0A7S3B3F3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B3F3_9EUKA)

HSP 1 Score: 110 bits (276), Expect = 7.010e-24
Identity = 62/126 (49.21%), Postives = 79/126 (62.70%), Query Frame = 1 
Query:  541 ARPLRINVDLLSYQQARQAVQRGEVAEGVALYKRCVELDPRDGRGWLGLAQHEARRRDYAKARALYETGLRNSPDNPYLLQASAGGLGDAYGVMEERLGNQRRAQELYVLATKVDPTHAASWVALG 918
            +RPLRIN+DLL+++ AR  VQRG+     A YKRC++L+P+DGR WLGL+Q   R+    +A  L + GLR  P NPYLLQA        +G ++ER G Q  A   Y  A K  P HAASWVA G
Sbjct:   64 SRPLRINLDLLTHR-ARVLVQRGDRKGAAATYKRCMQLEPQDGRAWLGLSQLRRRQGREEEAARLLQGGLRVDPANPYLLQA--------WGTLQERRGFQDEALASYSRAVKAQPRHAASWVACG 180
[Close]
BLAST of mRNA_P-wetherbeei_contig1340.1.7 vs. uniprot
Match: A0A5J4YY57_PORPP (PsbB mRNA maturation factor Mbb1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YY57_PORPP)

HSP 1 Score: 115 bits (289), Expect = 5.180e-23
Identity = 69/156 (44.23%), Postives = 95/156 (60.90%), Query Frame = 1 
Query:  475 VEAELLGYYDELVP--------GPGPGARAARPLRINVDLLSYQQARQAVQRGEVAEGVALYKRCVELDPRDGRGWLGLAQHEARRRDYAKARALYETGLRNSPDNPYLLQASAGGLGDAYGVMEERLGNQRRAQELYVLATKVDPTHAASWVALG 918
            VE  LL   DE +P         P     +   L+INVDL ++ +AR AV+R ++ E   L++RCVEL+  D RGWLGLA+ E RR++Y + R ++   L+    +PYLLQA        +GV+E++LGN  RA+EL + ATK DP HAASWVA G
Sbjct:  147 VEERLLS--DEQLPLDGRDRIVSPQASLGSGGSLKINVDL-AHSRARSAVKRAQLDEAARLFRRCVELNRYDARGWLGLARIEFRRKNYEEMRRVFSAALKLLRKSPYLLQA--------WGVLEQKLGNIDRAKELLLAATKADPKHAASWVATG 291
[Close]
BLAST of mRNA_P-wetherbeei_contig1340.1.7 vs. uniprot
Match: A0A7S1TD61_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD61_9RHOD)

HSP 1 Score: 108 bits (269), Expect = 6.780e-21
Identity = 72/181 (39.78%), Postives = 100/181 (55.25%), Query Frame = 1 
Query:  391 PSSGGARLQLDDTGHGVLLVNRT-ALSLKVEAELLGYYDELVPGPGPGARA----ARPLRINVDLLSYQQARQAVQRGEVAEGVALYKRCVELDPRDGRGWLGLAQHEARRRDYAKARALYETGLRNSPDNPYLLQASAGGLGDAYGVMEERLGNQRRAQELYVLATKVDPTHAASWVALG 918
            P  G ++   DD    +    R  AL  KV+  L+   D  VP  G G+      +RPL+INVDL S+  ARQ+ +RG  +E + L++RCV++DP DGRGWLGLA+    R +   +R  +   +R    N +LLQA        +G+MEE+ GN  RA+ L   A + D  HA SWVALG
Sbjct:    6 PREGRSQSSADDQRKRLQQQKRARALERKVKEVLMDEEDR-VPPLGAGSLENYLPSRPLKINVDL-SHFHARQSQKRGNSSEALRLFRRCVDMDPYDGRGWLGLARLLFLRGEEEASRETFRNAVRYCRSNSHLLQA--------WGIMEEKAGNISRARRLLHSAIRADQKHAPSWVALG 176
[Close]
BLAST of mRNA_P-wetherbeei_contig1340.1.7 vs. uniprot
Match: B7FSR4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FSR4_PHATC)

HSP 1 Score: 102 bits (255), Expect = 1.040e-18
Identity = 60/149 (40.27%), Postives = 86/149 (57.72%), Query Frame = 1 
Query:  499 YDELVPGPGP-----GARAARPLRINVDLLSYQQARQAVQRGEVAEGVALYKRCVELDPRDGRGWLGLAQHEARRRDYAKARALYETGLRNSPD-NPYLLQASAGG---LGDAYGVMEERLGNQRRAQELYVLATKVDPTHAASWVALG 918
            YD  + G G      G R + PLR+N D L+Y  A++ +Q G V E   LY   +++DPRDGR +LG+++  +RRRD+  A+   +TG+ N+   N   +QA  G    L  A G +EE  G    A+ LY+ A K  PTHAA+WV+LG
Sbjct:  426 YDTSLMGDGAVQFRDGVRLSNPLRVNADRLNYL-AKKELQHGRVEEAQELYTIALQIDPRDGRAYLGMSRCASRRRDFKLAKVWLQTGISNAVSVNENTMQADRGANPFLLQALGCLEENSGRLSEAEALYIAAAKSRPTHAAAWVSLG 573
[Close]
BLAST of mRNA_P-wetherbeei_contig1340.1.7 vs. uniprot
Match: A0A1E7FB08_9STRA (TPR-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB08_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.580e-17
Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1 
Query:  475 VEAELLGY------YDELVPGPGP-----GARAARPLRINVDLLSYQQARQAVQRGEVAEGVALYKRCVELDPRDGRGWLGLAQHEARRRDYAKARALYETGLRNS--------PD---NPYLLQASAGGLGDAYGVMEERLGNQRRAQELYVLATKVDPTHAASWVAL 915
            VE  L GY      Y+  + G G      G R   PLR+N D L+Y  A++ ++   + E   LY++ +++DPRDGR ++GL++   RRRD+  A+     G+  S        PD   NP+LLQ          G +EE++G+   A+ LY+ A +  P+HAASWVAL
Sbjct:    2 VEDRLFGYRSGTDMYETSLIGDGAIQFRDGIRLGNPLRVNADRLNYH-AKKELRSNRLEEAQELYEQAIQIDPRDGRAYIGLSRCAQRRRDFKLAKEYLRIGIAQSVSCGYDSKPDVGANPFLLQT--------LGCLEEKMGHLSEAESLYISAVRSRPSHAASWVAL 161
[Close]
BLAST of mRNA_P-wetherbeei_contig1340.1.7 vs. uniprot
Match: A0A1Z5JMI6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMI6_FISSO)

HSP 1 Score: 96.3 bits (238), Expect = 9.220e-17
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 1 
Query:  529 GARAARPLRINVDLLSYQQARQAVQRGEVAEGVALYKRCVELDPRDGRGWLGLAQHEARRRDYAKARALYETGLRNS-------PD---NPYLLQASAGGLGDAYGVMEERLGNQRRAQELYVLATKVDPTHAASWVAL 915
            G R    L IN D L+Y  A++ +++G V E   LY+R VE+DPRDGR +LGL++   RR+D+  AR     G+ NS       PD   NP+LLQA         G +EE+ G   +A+ LY  A +  P+HAA WVAL
Sbjct:  254 GVRLGNALPINADRLNYM-AKKEMKKGRVEEAEELYERAVEIDPRDGRAYLGLSRCAQRRQDFKLAREWLNLGIANSASTFNGNPDRGANPFLLQA--------LGCLEEKAGQLSQAESLYTSAVRSRPSHAAGWVAL 383
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1340.1.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1N5_9STRA5.450e-3969.35Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S4DG14_HETAK1.380e-3754.19Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FP63_ECTSI5.710e-3547.18PsbB mRNA maturation factor Mbb1 n=2 Tax=Ectocarpu... [more]
A0A7S2XUS2_9STRA1.750e-2439.77Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3B3F3_9EUKA7.010e-2449.21Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A5J4YY57_PORPP5.180e-2344.23PsbB mRNA maturation factor Mbb1, chloroplastic n=... [more]
A0A7S1TD61_9RHOD6.780e-2139.78Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
B7FSR4_PHATC1.040e-1840.27Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1E7FB08_9STRA7.580e-1735.50TPR-like protein n=1 Tax=Fragilariopsis cylindrus ... [more]
A0A1Z5JMI6_FISSO9.220e-1741.73Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1340contigP-wetherbeei_contig1340:2..3824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FP63
PFAMsEF-hand_5,HD_4,RelA_SpoT,TPR_16,TPR_19,TPR_8
Model size2352
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00951,ko:K20310
KEGG ReactionR00429
KEGG Pathwayko00230,map00230
Hectar predicted targeting categoryother localisation
Exons5
Evalue8.92e-36
EggNOG OGsCOG0457@1|root,KOG1124@2759|Eukaryota
Ec32 ortholog descriptionPsbB mRNA maturation factor Mbb1
Ec32 orthologEc-08_000700.1
EC2.7.6.5
Descriptioncellular component assembly
Cds size2328
COG categoryO
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1340.1.7prot_P-wetherbeei_contig1340.1.7Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1340 2..3800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185983.7688823-CDS-P-wetherbeei_contig1340:1..8231683185983.7688823-CDS-P-wetherbeei_contig1340:1..823Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1340 2..823 -
1683185983.7800474-CDS-P-wetherbeei_contig1340:1145..14601683185983.7800474-CDS-P-wetherbeei_contig1340:1145..1460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1340 1146..1460 -
1683185983.788748-CDS-P-wetherbeei_contig1340:1883..22911683185983.788748-CDS-P-wetherbeei_contig1340:1883..2291Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1340 1884..2291 -
1683185983.7989357-CDS-P-wetherbeei_contig1340:2516..27411683185983.7989357-CDS-P-wetherbeei_contig1340:2516..2741Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1340 2517..2741 -
1683185983.8062813-CDS-P-wetherbeei_contig1340:3242..38001683185983.8062813-CDS-P-wetherbeei_contig1340:3242..3800Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1340 3243..3800 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185983.8136935-UTR-P-wetherbeei_contig1340:3800..38241683185983.8136935-UTR-P-wetherbeei_contig1340:3800..3824Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1340 3801..3824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1340.1.7

>prot_P-wetherbeei_contig1340.1.7 ID=prot_P-wetherbeei_contig1340.1.7|Name=mRNA_P-wetherbeei_contig1340.1.7|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=776bp
MPRRRRDGSVCPRIVATAACLYYCGTAVSFHSGVVLRAAFTPKYTSRRAC
WGVEHRQASAPQDQQRQRGHSASQTCMSSRRSETSWQRKPRGGNTNGGGD
KEDDRDSDVDLSSLFGLLSARQPSSGGARLQLDDTGHGVLLVNRTALSLK
VEAELLGYYDELVPGPGPGARAARPLRINVDLLSYQQARQAVQRGEVAEG
VALYKRCVELDPRDGRGWLGLAQHEARRRDYAKARALYETGLRNSPDNPY
LLQASAGGLGDAYGVMEERLGNQRRAQELYVLATKVDPTHAASWVALGLL
RQRRRSPDEARRCFARATEADPGSYYAWLAWGVLERSLGDTAAARERFRR
SARANPRNAAVYQAWGVMEADLGEYAAAEALFRRGFQESGRNTYVLQAWA
VMEARRGQSQRAIELFEQAIALRPNDGAAYQAYALLVKGLGDVEGARKLF
RRAAERSPRHAPTWQAWGLMEAGLGRTAAAREIFQQGVWACPRDKNVVRI
LQAWGMLEDAAGHLDDARKCFRFALEADQFCVPAMVAWALMEERAAAAVA
ATPGAGAADVVASGSTMTPAATATVGAVVGPVDRIAAAEPVTGAAAAVAA
VAAAAVAVGTVGAVAASKAGSAAAAAAAAGALPRATPTATDEEALGRVRA
AAAAAAITPVPQGLERARELLEAAVRVDSTSVHLWKAYEDMELRSGRVAD
ARRVYERGLAAMNAGGVAGSAVGGGGRGAKAAGAAAAAARGVRGMLQMDE
MGVREWREDIAAIGGGGGAGLQWSSD
back to top

mRNA from alignment at P-wetherbeei_contig1340:2..3824-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1340.1.7 ID=mRNA_P-wetherbeei_contig1340.1.7|Name=mRNA_P-wetherbeei_contig1340.1.7|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3823bp|location=Sequence derived from alignment at P-wetherbeei_contig1340:2..3824- (Phaeothamnion wetherbeei SAG_119_79)
CCCTGCCAATCCTTGGAAGCAAGGATGCCTCGGCGACGGCGAGACGGATC
TGTGTGCCCAAGAATCGTCGCGACGGCGGCATGCTTGTATTATTGTGGAA
CCGCGGTTTCTTTCCACTCTGGCGTGGTGCTCAGGGCGGCGTTCACGCCG
AAGTACACATCTCGGCGTGCATGTTGGGGCGTCGAGCACCGGCAGGCATC
CGCGCCGCAGGACCAACAGCGGCAGCGAGGGCATTCTGCTTCCCAAACAT
GCATGAGCTCGCGACGTTCTGAAACATCCTGGCAGCGGAAGCCACGCGGC
GGCAATACTAATGGCGGCGGCGACAAGGAGGACGACAGAGACAGCGACGT
GGACCTGTCCTCACTTTTCGGGCTCTTGAGCGCGCGACAGCCGTCCTCAG
GAGGGGCGCGCCTTCAGCTGGACGACACGGGCCACGGCGTCTTGCTCGTG
AACCGCACGGCGCTGAGCCTGAAAGTGGAGGCGGAGCTGCTGGGGTACTA
CGATGAGCTCGTGCCCGGCCCGGGCCCGGGGGCGCGGGCGGCACGGCCCC
TCCGCATCAACGTCGACCTGCTTTCGTATCAGGTGCACCTTCACTGTGGG
GTTTCTTTTCAGTCCGCCTGGTTCATCCTTGGCCAATCACAAGAGGGATG
TGTTTTCGGCTCAACGTTATTGGCTCGATGCGGCGCTGGTGGCGGAATTT
AGATGTCGCAGTTCTCTTCTCACAAGGGAAGGATTGAACATCAAGTACGG
CTTGATTATTATTCAATGATGCGCTTGTGCACCGTCAGAGTCTTGAATGG
AAATAGCTTGTTCTTGTTCTTGGTGCCCCCAAGTGCGAGCGTACCAATTT
TCTCGCAGCGTCTTTCCTCTCTCTGCGCTGCTTTAATCTCGTCTGCCCCG
TCTTACGTGTGCGGCTCGGTCGCTCGATCGTCCACCGTTTGCGGGATCCA
CTACTCCCCGCCGTCCGCTGCGCCCTTTCAATCCTTCTCCGGCTCTACCA
CTACTGTTTCAACCACTTGTTCCGGCCTACCTGCCGGGTTGGCCGGCCGG
TTCGATACCGCCGGGCCGTTTGGGGGGGGGGAGCAGGCGAGGCAGGCGGT
GCAGCGCGGCGAGGTGGCGGAGGGCGTGGCGCTATACAAACGGTGCGTGG
AGCTGGACCCGCGGGACGGCCGCGGCTGGCTCGGCCTGGCGCAGCATGAG
GCCCGCCGCCGGGACTACGCCAAGGCGCGTGCCCTGTACGAGACGGGCCT
GCGCAACTCCCCTGATAACCCTTATCTCCTGCAGGCGAGTGCAGGCGGAT
TGGGGGATGTGAACCAATGGACAAATCATGGACCGGTTTGACTTAGCTAG
GTGCACAAGCGGACAATTTCAAGTCTATGCTGGATAAGTTCGCTTGCCCA
CGTACAAAGATCTAACTCCTGCCCTGCCAATGTCCGGCATCTTTCTCCCG
CCATTGGTTTCTCTTTCCGCCTTGCCACGCCTGCCCTTCCGCCCCGTCCG
CCTCGCTCTTTCTATTTTTCCCCCTCATTAAAGGCGTACGGCGTGATGGA
GGAGCGGCTGGGCAACCAGCGCCGCGCCCAAGAGCTCTACGTCCTCGCCA
CCAAGGTCGACCCAACCCATGCTGCCTCGTGGGTAGCGCTCGGCCTGCTC
CGGCAGCGCCGCCGCAGCCCGGACGAGGCCCGCCGCTGCTTCGCGCGGGC
GACGGAAGCCGACCCGGGCTCCTACTATGCCTGGCTGGCGTGGGGCGTCC
TGGAGAGATCGCTGGGGGACACGGCGGCGGCGCGGGAGCGGTTCCGGCGA
TCGGCCAGGGCGAACCCGCGCAACGCGGCGGTGTATCAGGCGTGGGGCGT
GATGGAGGCAGACCTGGGGGAATATGCGGCGGCGGAGGCGTTGTTCCGGA
GGGGGTTCCAAGAGAGCGGCCGCAACACGTACGTTTTGCAGGTGAGAGAG
GGAACGGAAGACGAGGAACGGAAAGGAGAAAAGGAACGCCAGAGGGAAAG
ATATGCCGTACTGCGGCAGCGGGCCTGCTCGCTCGGGCGATGTGGTGCGG
TGGTTAGGCTGTATGATTGTTGTATGGTTCAGCATTGGGGCATTGCGTGC
AAGCGCACTTACCCTCTGTTTTTGTGATTCTAACCTTCTGTCCTTAGACC
AGAAGTGTTTGCCAAGATTGTCTTTTTTGCTTCCTACATTCCTTCCTCGT
TTCCTTCCGACTTGCCTTCAAACGCCTGCCGCCGTTCTGACCTGGATTTC
TTCTTCTGCGCCACCCTGCCATCATTCAAATATTCACGGCGCACGTCGTC
CGCCACCGCCACCATCCGCGCGCCGTTTCCTCCACTTTGTCCTTGTTTTT
GGTCCCGCCGCTAGGCGTGGGCGGTGATGGAGGCGCGGCGCGGGCAGTCG
CAACGCGCCATCGAGCTCTTCGAGCAGGCCATCGCCCTTCGCCCCAACGA
CGGCGCCGCCTACCAGGCCTACGCGCTGCTCGTCAAGGGCCTGGGCGACG
TCGAGGGTGCGCGGAAGCTGTTCCGTCGTGCCGCCGAGCGGTCGCCGCGG
CACGCGCCGACGTGGCAGGCGTGGGGCCTGATGGAGGCTGGACTGGGGCG
GACGGCGGCGGCGCGCGAGATCTTCCAGCAGGGCGTGTGGGCGTGCCCGC
GGGATAAGAACGTCGTGCGCATCCTGCAGGTGAGGGAAGGGAGAAGGGAG
CCTTGACACAATGGTGACTGTCGGTGTTGGTGGCGGTGGTGGCGGCGGTG
GCGGCGGCGGTGGCGGCGGCGGCACGGAAGAAACGAGGAGGAGAAGAGGC
GAGGGAAGGCGGCTTGATTTTCATTTCATTTTTTTGGGCGGGTCTTCGAC
GTTGCAATGCGGATTGTCGGACAGGTGGAAGGAGACATGAAGCTGTCAAT
TTGCTTCCACAACATCATGAAGAGCAGAACCGTCCTTCGCTCCCCTCCGT
CTTATCTCTTTTCCAGTTCTCTTCTCTGTGCTCCCCGCTCCTACCGTCCA
GGCGTGGGGGATGCTCGAGGACGCGGCGGGTCACCTTGACGACGCGCGCA
AGTGCTTCCGCTTCGCGCTCGAAGCCGACCAATTCTGCGTCCCCGCCATG
GTAGCGTGGGCGCTTATGGAGGAGCGCGCCGCCGCCGCCGTGGCAGCCAC
TCCTGGAGCAGGCGCTGCTGATGTAGTCGCGAGCGGGAGCACGATGACAC
CGGCGGCGACGGCGACAGTTGGCGCTGTGGTGGGGCCGGTTGACCGCATC
GCTGCCGCCGAGCCCGTGACGGGAGCAGCCGCTGCGGTGGCCGCGGTGGC
GGCGGCCGCAGTGGCAGTGGGGACGGTGGGAGCAGTGGCAGCGTCGAAGG
CTGGTTCGGCGGCAGCGGCGGCAGCGGCGGCAGGAGCATTGCCAAGAGCA
ACGCCCACGGCCACCGACGAGGAAGCGCTGGGCAGGGTGCGGGCGGCGGC
GGCGGCGGCGGCCATCACGCCGGTGCCACAAGGGCTGGAGCGTGCGCGGG
AGCTGCTTGAAGCCGCCGTCCGCGTCGACAGCACCAGCGTCCACCTCTGG
AAGGCATACGAGGACATGGAGCTCCGCTCTGGACGCGTCGCGGATGCCCG
CCGGGTATATGAGCGCGGGTTAGCGGCCATGAACGCCGGCGGCGTGGCGG
GTTCAGCGGTGGGCGGCGGCGGGCGGGGCGCCAAGGCGGCGGGGGCCGCG
GCGGCGGCCGCCCGCGGCGTGCGCGGCATGCTGCAGATGGACGAAATGGG
CGTGAGGGAATGGCGAGAGGACATCGCGGCCATAGGCGGCGGCGGCGGGG
CCGGCCTGCAGTGGTCTTCGGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1340:2..3824-

>mRNA_P-wetherbeei_contig1340.1.7 ID=mRNA_P-wetherbeei_contig1340.1.7|Name=mRNA_P-wetherbeei_contig1340.1.7|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2328bp|location=Sequence derived from alignment at P-wetherbeei_contig1340:2..3824- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTCGGCGACGGCGAGACGGATCTGTGTGCCCAAGAATCGTCGCGAC
GGCGGCATGCTTGTATTATTGTGGAACCGCGGTTTCTTTCCACTCTGGCG
TGGTGCTCAGGGCGGCGTTCACGCCGAAGTACACATCTCGGCGTGCATGT
TGGGGCGTCGAGCACCGGCAGGCATCCGCGCCGCAGGACCAACAGCGGCA
GCGAGGGCATTCTGCTTCCCAAACATGCATGAGCTCGCGACGTTCTGAAA
CATCCTGGCAGCGGAAGCCACGCGGCGGCAATACTAATGGCGGCGGCGAC
AAGGAGGACGACAGAGACAGCGACGTGGACCTGTCCTCACTTTTCGGGCT
CTTGAGCGCGCGACAGCCGTCCTCAGGAGGGGCGCGCCTTCAGCTGGACG
ACACGGGCCACGGCGTCTTGCTCGTGAACCGCACGGCGCTGAGCCTGAAA
GTGGAGGCGGAGCTGCTGGGGTACTACGATGAGCTCGTGCCCGGCCCGGG
CCCGGGGGCGCGGGCGGCACGGCCCCTCCGCATCAACGTCGACCTGCTTT
CGTATCAGCAGGCGAGGCAGGCGGTGCAGCGCGGCGAGGTGGCGGAGGGC
GTGGCGCTATACAAACGGTGCGTGGAGCTGGACCCGCGGGACGGCCGCGG
CTGGCTCGGCCTGGCGCAGCATGAGGCCCGCCGCCGGGACTACGCCAAGG
CGCGTGCCCTGTACGAGACGGGCCTGCGCAACTCCCCTGATAACCCTTAT
CTCCTGCAGGCGAGTGCAGGCGGATTGGGGGATGCGTACGGCGTGATGGA
GGAGCGGCTGGGCAACCAGCGCCGCGCCCAAGAGCTCTACGTCCTCGCCA
CCAAGGTCGACCCAACCCATGCTGCCTCGTGGGTAGCGCTCGGCCTGCTC
CGGCAGCGCCGCCGCAGCCCGGACGAGGCCCGCCGCTGCTTCGCGCGGGC
GACGGAAGCCGACCCGGGCTCCTACTATGCCTGGCTGGCGTGGGGCGTCC
TGGAGAGATCGCTGGGGGACACGGCGGCGGCGCGGGAGCGGTTCCGGCGA
TCGGCCAGGGCGAACCCGCGCAACGCGGCGGTGTATCAGGCGTGGGGCGT
GATGGAGGCAGACCTGGGGGAATATGCGGCGGCGGAGGCGTTGTTCCGGA
GGGGGTTCCAAGAGAGCGGCCGCAACACGTACGTTTTGCAGGCGTGGGCG
GTGATGGAGGCGCGGCGCGGGCAGTCGCAACGCGCCATCGAGCTCTTCGA
GCAGGCCATCGCCCTTCGCCCCAACGACGGCGCCGCCTACCAGGCCTACG
CGCTGCTCGTCAAGGGCCTGGGCGACGTCGAGGGTGCGCGGAAGCTGTTC
CGTCGTGCCGCCGAGCGGTCGCCGCGGCACGCGCCGACGTGGCAGGCGTG
GGGCCTGATGGAGGCTGGACTGGGGCGGACGGCGGCGGCGCGCGAGATCT
TCCAGCAGGGCGTGTGGGCGTGCCCGCGGGATAAGAACGTCGTGCGCATC
CTGCAGGCGTGGGGGATGCTCGAGGACGCGGCGGGTCACCTTGACGACGC
GCGCAAGTGCTTCCGCTTCGCGCTCGAAGCCGACCAATTCTGCGTCCCCG
CCATGGTAGCGTGGGCGCTTATGGAGGAGCGCGCCGCCGCCGCCGTGGCA
GCCACTCCTGGAGCAGGCGCTGCTGATGTAGTCGCGAGCGGGAGCACGAT
GACACCGGCGGCGACGGCGACAGTTGGCGCTGTGGTGGGGCCGGTTGACC
GCATCGCTGCCGCCGAGCCCGTGACGGGAGCAGCCGCTGCGGTGGCCGCG
GTGGCGGCGGCCGCAGTGGCAGTGGGGACGGTGGGAGCAGTGGCAGCGTC
GAAGGCTGGTTCGGCGGCAGCGGCGGCAGCGGCGGCAGGAGCATTGCCAA
GAGCAACGCCCACGGCCACCGACGAGGAAGCGCTGGGCAGGGTGCGGGCG
GCGGCGGCGGCGGCGGCCATCACGCCGGTGCCACAAGGGCTGGAGCGTGC
GCGGGAGCTGCTTGAAGCCGCCGTCCGCGTCGACAGCACCAGCGTCCACC
TCTGGAAGGCATACGAGGACATGGAGCTCCGCTCTGGACGCGTCGCGGAT
GCCCGCCGGGTATATGAGCGCGGGTTAGCGGCCATGAACGCCGGCGGCGT
GGCGGGTTCAGCGGTGGGCGGCGGCGGGCGGGGCGCCAAGGCGGCGGGGG
CCGCGGCGGCGGCCGCCCGCGGCGTGCGCGGCATGCTGCAGATGGACGAA
ATGGGCGTGAGGGAATGGCGAGAGGACATCGCGGCCATAGGCGGCGGCGG
CGGGGCCGGCCTGCAGTGGTCTTCGGAC
back to top