mRNA_P-wetherbeei_contig1337.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1337.1.1
Unique NamemRNA_P-wetherbeei_contig1337.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1337.1.1 vs. uniprot
Match: D7FZ34_ECTSI (Carnitine/acylcarnitine translocase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ34_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 6.910e-38
Identity = 85/152 (55.92%), Postives = 101/152 (66.45%), Query Frame = 1
Query:   46 RSAGLSILSGGTFFKGLGATFGRDVIPHGVWFASWEASKRQFAAWEGVSEAH---ISAAAHLASGAVAATVAWLVGYPFDVIKTRMQAHGGGS--GGDAAEFSLSMTGMARRMQAREGVAVFYRGLGLKLARAIPQSAVGFYLYETVAKFLR 486
            R+ GLS    G    GLGAT GRDV+PHGVWFAS+E  K++F+A EGV       +S AA LASG +AAT AWLVGYPFDVIKTR+QA G G   GG  A         A+ M + +G+ VFYRG GLKLARA+P S +GF+ YE  AK LR
Sbjct:  161 RTFGLS----GLLSTGLGATMGRDVLPHGVWFASYEWCKQEFSAREGVKACDNGALSVAAQLASGGIAATTAWLVGYPFDVIKTRIQAAGMGKVPGGVVAT--------AQHMASVDGMGVFYRGFGLKLARAVPMSMIGFFAYEVAAKQLR 300          
BLAST of mRNA_P-wetherbeei_contig1337.1.1 vs. uniprot
Match: A0A836CMX5_9STRA (Carnitine/acylcarnitine translocase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMX5_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.370e-35
Identity = 77/133 (57.89%), Postives = 91/133 (68.42%), Query Frame = 1
Query:   88 KGLGATFGRDVIPHGVWFASWEASKRQFAAWEGVSEAHISAAAHLASGAVAATVAWLVGYPFDVIKTRMQAHGGGSGGDAAEFSLSMTGMARRMQAREGVAVFYRGLGLKLARAIPQSAVGFYLYETVAKFLR 486
            +GL AT  RDV+PHGVWFAS+EA+KR  A     +   +  AA +A+GA AAT AW VGYP DV+KTRMQAHG  + G  AE          RM A EGV VF+RGLGLKLARAIP SA+GF+ YE VA +LR
Sbjct:  196 QGLSATLWRDVLPHGVWFASYEAAKRALAG--DAAAGPLDPAAQVAAGATAATAAWCVGYPADVVKTRMQAHG--ASGSFAE-------TVARMHAAEGVRVFWRGLGLKLARAIPMSAIGFFAYEEVAAYLR 317          
BLAST of mRNA_P-wetherbeei_contig1337.1.1 vs. uniprot
Match: A0A7S2EPP7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EPP7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.380e-27
Identity = 75/171 (43.86%), Postives = 99/171 (57.89%), Query Frame = 1
Query:    4 QLVKIRMQMLALDGRSAGLSILSGGTF-----FKGLGATFGRDVIPHGVWFASWEASKRQFAAWEGVSEAHISAAAHLASGAVAATVAWLVGYPFDVIKTRMQAHGGGSGGDAAEF--SLSMTGMARRMQAREG---VAVFYRGLGLKLARAIPQSAVGFYLYETVAKFLR 486
            +L+K+  Q++     SA  SI++ G F     ++GLGAT  RD +PHGVWFAS++ SK   +  +G      SA   L SGA AA  AW VGYPFDVIKTR+QA        A EF  S S+    R + +       A  YRG  LK+A+A+P SAV FY+YE+V + LR
Sbjct:   35 ELIKVNQQVIGRSFSSA-TSIVTSGLFSRQIAWRGLGATLLRDGLPHGVWFASYQYSKDYLSQIDGTYPGKSSAFIPLFSGAFAAFTAWAVGYPFDVIKTRIQA--------AKEFNESKSVAQATREILSESNGRPFAALYRGFWLKIAKAVPASAVNFYVYESVVESLR 196          
BLAST of mRNA_P-wetherbeei_contig1337.1.1 vs. uniprot
Match: F0YG70_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG70_AURAN)

HSP 1 Score: 111 bits (278), Expect = 4.510e-27
Identity = 66/143 (46.15%), Postives = 86/143 (60.14%), Query Frame = 1
Query:   76 GTFFKGLGATFGRDVIPHGVWFASWEASKRQFAAWEGVSEAHISAAAHLASGAVAATVAWLVGYPFDVIKTRMQAHGGGSGGDAAEFSLSMTGMARRMQAREG-------VAVFYRGLGLKLARAIPQSAVGFYLYETVAKFL 483
            G  F+GL ATF RDV+PHGVWF ++  +K +  A  G  +A +   A    GA AATVAW+VGYPFD++KTR+Q          +   LS+TG AR +  RE        VAV YRGLGLKL RA+P S + F+ YE+  + L
Sbjct:  137 GAAFRGLSATFYRDVVPHGVWFLAYADAKARLEASRGADDATVPVVA----GAWAATVAWVVGYPFDLLKTRIQ---------GSPTPLSLTGAARDLLRREAAPGAVSAVAVLYRGLGLKLLRAVPSSGLNFFAYESAKREL 266          
BLAST of mRNA_P-wetherbeei_contig1337.1.1 vs. uniprot
Match: A0A0M0K9X8_9EUKA (Solute carrier family 25 member 45 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K9X8_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 4.980e-26
Identity = 68/136 (50.00%), Postives = 80/136 (58.82%), Query Frame = 1
Query:   88 KGLGATFGRDVIPHGVWFASWEASKRQFAAWEGVSEAH----------ISAAAHLASGAVAATVAWLVGYPFDVIKTRMQAHGGGSGGDAAEFSLSMTGMARRMQAREGVAVFYRGLGLKLARAIPQSAVGFYLYE 465
            KGL AT  RDV+PHGVWFA++E SK+ F      SEA           +S  A L+SGA AA  AW+VGYP DVIKTR Q  GG           S+   AR + A  G+  FY GLGLKL RA+P SAVGF+ YE
Sbjct:  151 KGLYATLLRDVVPHGVWFAAYEYSKKHFE--RRASEAAGLPVGGTPPPLSTVAQLSSGAFAAIAAWVVGYPADVIKTRCQMEGG---------QASVAEAARAIYAEGGLRAFYNGLGLKLLRAVPMSAVGFFAYE 275          
BLAST of mRNA_P-wetherbeei_contig1337.1.1 vs. uniprot
Match: A0A8J5XL04_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XL04_DIALT)

HSP 1 Score: 108 bits (271), Expect = 1.010e-25
Identity = 72/167 (43.11%), Postives = 98/167 (58.68%), Query Frame = 1
Query:    4 QLVKIRMQMLALDGRSAGLSILSGGT----------FFKGLGATFGRDVIPHGVWFASWEASKRQFAAWEGVSEAHISAAAHLASGAVAATVAWLVGYPFDVIKTRMQAHGGGSGGDAAEFSLSMTGMARRMQAREG---VAVFYRGLGLKLARAIPQSAVGFYLYE 465
            +LVK+ +Q  +   + AG  +L+G +           ++GL AT  RD +PHGVWFAS+E  KR+ AA +       +AAA L+ GA AATVAW VGYP D++KTR+Q     S   A   + S+   AR + A  G    A FYRG GLKLARA+P +A+ F+ YE
Sbjct:  141 ELVKVHLQ--SSSPKEAGAGLLAGASKVYATIGVPAIWRGLSATLLRDGLPHGVWFASYEWGKRELAARD-PDRVLPTAAAPLSCGAFAATVAWAVGYPADIVKTRIQ-----SPAHAGRDAPSVLAAARELLAESGGRPFAAFYRGFGLKLARAVPMNALSFFAYE 299          
BLAST of mRNA_P-wetherbeei_contig1337.1.1 vs. uniprot
Match: K0TK08_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TK08_THAOC)

HSP 1 Score: 108 bits (270), Expect = 1.370e-25
Identity = 75/171 (43.86%), Postives = 90/171 (52.63%), Query Frame = 1
Query:    4 QLVKIRMQMLALDGRSAGLSILSG----GTFFKGLGATFGRDVIPHGVWFASWEASKRQFAAWEGVSEA-------HISAAAHLASGAVAATVAWLVGYPFDVIKTRMQAHGGGSGGDAAEFSLSMTGMARRMQAREGVAVFYRGLGLKLARAIPQSAVGFYLYETVAKFL 483
            +LVK+  Q+      SA  ++  G       ++GL AT  RD IPHGVWFAS+E +K   A     SE            A  + SGA AAT AWLVGYP D+IKTR+QA  G  G       L +T    R      +   YRGL LKL RAIP SA+GF  YET AKFL
Sbjct:  141 ELVKVTQQVAGASASSATTNVARGLFSNAGAWRGLSATMLRDGIPHGVWFASYEYAKTSLALHNSSSEGSEECGKGETDVAIPMLSGAFAATTAWLVGYPADLIKTRIQAGSGYRG------ILDVTRELIRESGGRPILGLYRGLTLKLCRAIPASAIGFLTYETAAKFL 305          
BLAST of mRNA_P-wetherbeei_contig1337.1.1 vs. uniprot
Match: B8BYS8_THAPS (Carnitine/acylcarnitine translocase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYS8_THAPS)

HSP 1 Score: 106 bits (264), Expect = 1.730e-24
Identity = 75/173 (43.35%), Postives = 99/173 (57.23%), Query Frame = 1
Query:    4 QLVKIRMQMLALDGRSAGLSILSGGTF-----FKGLGATFGRDVIPHGVWFASWEASKRQFAAWEGVSEAHISA-----AAHLASGAVAATVAWLVGYPFDVIKTRMQAHGGGSGGDAAEFSLSMTGMARRMQAREG---VAVFYRGLGLKLARAIPQSAVGFYLYETVAKFL 483
            +L+K+  Q++    +SA  S++ GG F     +KGLGAT  RD IPHGVWF S+E +K +   +   S+   S      A  + +GA AAT AW VGYPFD+IKTR+QA G GSG         +   A+ +    G   VA  Y+G  LKL R+IP SA+GF  YET AK L
Sbjct:  176 ELIKVTQQVIGKSVKSATTSVV-GGLFSKTGAWKGLGATLLRDGIPHGVWFVSYEYAKTEMTTFSTNSDDEKSTMNDDVAIPMLAGAFAATTAWAVGYPFDLIKTRIQA-GSGSG---------IVSTAKDLINESGGRVVAGLYKGFTLKLLRSIPSSAIGFLAYETAAKAL 337          
BLAST of mRNA_P-wetherbeei_contig1337.1.1 vs. uniprot
Match: B7GCN7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GCN7_PHATC)

HSP 1 Score: 104 bits (259), Expect = 4.040e-24
Identity = 70/163 (42.94%), Postives = 93/163 (57.06%), Query Frame = 1
Query:    4 QLVKIRMQMLALDGRSAGLSILSGGT---FFKGLGATFGRDVIPHGVWFASWEASKRQFAAWEGVSEA--HISAAAHLASGAVAATVAWLVGYPFDVIKTRMQAHGGGSGGDAAEFSLSMTGMARRMQAREGVAVFYRGLGLKLARAIPQSAVGFYLYETVAK 477
            +L+K+  Q+     R AG ++L+       ++GL AT  RD IPHGVWFA++E +K      +G+ E     S +  LASGA+AAT AW VGYP D+IKTR+QA      G      +  T  A   +   GVA  YRG GLKL R+IP S +GF +YE V K
Sbjct:  133 ELIKVSQQVRGTPLRDAGGAVLTHWAQPAAWRGLYATLLRDGIPHGVWFATYEVAK------DGLEETLGKDSVSVPLASGALAATAAWAVGYPADLIKTRIQA-----AGPTENHGIVETARAIMNEGNAGVAGLYRGFGLKLVRSIPASMIGFTVYEFVKK 284          
BLAST of mRNA_P-wetherbeei_contig1337.1.1 vs. uniprot
Match: A0A7S2U9Y7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9Y7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.850e-23
Identity = 65/155 (41.94%), Postives = 85/155 (54.84%), Query Frame = 1
Query:    4 QLVKIRMQMLALDGRSAGLSILSGGTF----FKGLGATFGRDVIPHGVWFASWEASKRQFAAWEGVSEAHISAAAHLASGAVAATVAWLVGYPFDVIKTRMQAHGGGSGGDAAEFSLSMTGMARRMQAREGVAVFYRGLGLKLARAIPQSAVGFY 456
            +L+K+R Q+    G      +++ G      +KGLGAT  RD IPHGVWFAS+E +K       G +  H S    L+SGA AAT AW VGYPFD+IKTR+QA G G   + A+   S  G              Y+G  LKL RA+P S +GF+
Sbjct:   48 ELIKVRQQIKPQLGALEATKVVTQGLLSPSAWKGLGATLLRDGIPHGVWFASYEGAKMYLDKTIGGTPYHDSFTIPLSSGAFAATAAWGVGYPFDLIKTRIQAGGTGGIWETAQVLRSEPGG------------LYKGFSLKLVRAVPASMIGFF 190          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1337.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ34_ECTSI6.910e-3855.92Carnitine/acylcarnitine translocase n=2 Tax=Ectoca... [more]
A0A836CMX5_9STRA2.370e-3557.89Carnitine/acylcarnitine translocase n=1 Tax=Tribon... [more]
A0A7S2EPP7_9STRA2.380e-2743.86Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
F0YG70_AURAN4.510e-2746.15Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A0M0K9X8_9EUKA4.980e-2650.00Solute carrier family 25 member 45 n=1 Tax=Chrysoc... [more]
A0A8J5XL04_DIALT1.010e-2543.11Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
K0TK08_THAOC1.370e-2543.86Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8BYS8_THAPS1.730e-2443.35Carnitine/acylcarnitine translocase n=1 Tax=Thalas... [more]
B7GCN7_PHATC4.040e-2442.94Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2U9Y7_9STRA2.850e-2341.94Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1337contigP-wetherbeei_contig1337:200..963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZ34
PFAMsMito_carr
Model size486
Max annot lvl2759|Eukaryota
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.79e-39
EggNOG OGsKOG0762@1|root,KOG0762@2759|Eukaryota
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
Cds size465
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185982.663289-UTR-P-wetherbeei_contig1337:199..2201683185982.663289-UTR-P-wetherbeei_contig1337:199..220Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1337 200..220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185982.6776974-CDS-P-wetherbeei_contig1337:220..3291683185982.6776974-CDS-P-wetherbeei_contig1337:220..329Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1337 221..329 +
1683185982.689207-CDS-P-wetherbeei_contig1337:607..9631683185982.689207-CDS-P-wetherbeei_contig1337:607..963Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1337 608..963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1337.1.1prot_P-wetherbeei_contig1337.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1337 221..963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1337.1.1

>prot_P-wetherbeei_contig1337.1.1 ID=prot_P-wetherbeei_contig1337.1.1|Name=mRNA_P-wetherbeei_contig1337.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
MQMLALDGRSAGLSILSGGTFFKGLGATFGRDVIPHGVWFASWEASKRQF
AAWEGVSEAHISAAAHLASGAVAATVAWLVGYPFDVIKTRMQAHGGGSGG
DAAEFSLSMTGMARRMQAREGVAVFYRGLGLKLARAIPQSAVGFYLYETV
AKFLR
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mRNA from alignment at P-wetherbeei_contig1337:200..963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1337.1.1 ID=mRNA_P-wetherbeei_contig1337.1.1|Name=mRNA_P-wetherbeei_contig1337.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=764bp|location=Sequence derived from alignment at P-wetherbeei_contig1337:200..963+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCAGCTCGTGAAGATCCGCATGCAAATGCTAGCGCTGGACGGACGCAG TGCGGGCCTCAGCATCTTGAGCGGCGGCACCTTCTTCAAGGGCCTCGGGG CCACCTTCGGCCGCGACGTCATTCCTCACGGTGCGAAGTAACAACAAGTA CTCTTCCTTCCCTTAGCTGATGTCTCTAGATCGATAGCATTCTCTACTGG CCTCTGTTTGGCAGCCAATCTGCTGCTGCCCCAGCCTCCTCCTCCTCCTG TAGAATATGCGGGTAACAAGCCGGCCGGAAAGTCAGGAACATGAATGTAC TGAACTTCTCTTTCTTGATGCCTTTACCAAGGCCTGTTGGGGCGTCAGAC AGGAGTATGCAGTATTGAACTTTTCTCCTGAGTGTCTGGACGCCGCACTC TGAAACAGGCGTCTGGTTCGCGTCGTGGGAGGCCTCGAAGCGCCAATTCG CGGCCTGGGAGGGCGTCTCTGAGGCCCACATCAGCGCCGCAGCCCACCTC GCATCGGGTGCCGTCGCCGCCACCGTCGCCTGGCTGGTCGGTTACCCCTT CGACGTCATCAAGACCCGCATGCAAGCCCACGGCGGCGGCTCCGGCGGCG ACGCGGCGGAATTTTCACTGTCGATGACGGGGATGGCACGGCGGATGCAA GCTCGGGAAGGCGTGGCCGTGTTTTACCGGGGGCTGGGGCTCAAGCTGGC GCGGGCCATCCCGCAGAGCGCCGTCGGATTTTACCTCTACGAGACAGTGG CGAAGTTCTTGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1337:200..963+

>mRNA_P-wetherbeei_contig1337.1.1 ID=mRNA_P-wetherbeei_contig1337.1.1|Name=mRNA_P-wetherbeei_contig1337.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig1337:200..963+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAATGCTAGCGCTGGACGGACGCAGTGCGGGCCTCAGCATCTTGAG
CGGCGGCACCTTCTTCAAGGGCCTCGGGGCCACCTTCGGCCGCGACGTCA
TTCCTCACGGCGTCTGGTTCGCGTCGTGGGAGGCCTCGAAGCGCCAATTC
GCGGCCTGGGAGGGCGTCTCTGAGGCCCACATCAGCGCCGCAGCCCACCT
CGCATCGGGTGCCGTCGCCGCCACCGTCGCCTGGCTGGTCGGTTACCCCT
TCGACGTCATCAAGACCCGCATGCAAGCCCACGGCGGCGGCTCCGGCGGC
GACGCGGCGGAATTTTCACTGTCGATGACGGGGATGGCACGGCGGATGCA
AGCTCGGGAAGGCGTGGCCGTGTTTTACCGGGGGCTGGGGCTCAAGCTGG
CGCGGGCCATCCCGCAGAGCGCCGTCGGATTTTACCTCTACGAGACAGTG
GCGAAGTTCTTGCGG
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