mRNA_P-wetherbeei_contig9959.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9959.1.1
Unique NamemRNA_P-wetherbeei_contig9959.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9959.1.1 vs. uniprot
Match: D7FL11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL11_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.260e-7
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:   16 RVWFPNMFMTLISALPTKRTPECRFRVPPRMTKWDIKEYLLK 141
            R WFPNM M +IS     R  +  F++ P+MTKW++KEYL K
Sbjct:    4 RSWFPNMVMAMISGPSRSRPAQASFKIQPKMTKWEVKEYLTK 45
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BLAST of mRNA_P-wetherbeei_contig9959.1.1 vs. uniprot
Match: A0A7S3HDG0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDG0_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 5.280e-6
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:   16 RVWFPNMFMTLISALPTKRTPECRFRVPPRMTKWDIKEYLLK 141
            RV+FP+MFM LI+  P K  P+    VPP MTK +I EYL K
Sbjct:    8 RVFFPSMFMRLITWKPKKTPPQALLHVPPSMTKHEISEYLTK 49
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BLAST of mRNA_P-wetherbeei_contig9959.1.1 vs. uniprot
Match: A0A835YVT8_9STRA (Ribosomal protein L23/L15e core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT8_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 1.620e-5
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   22 WFPNMFMTLISALPTKRTPE-CRFRVPPRMTKWDIKEYLLKA 144
            WFP+ FM L++ +PT+  P+   FRV P+MTK ++KEYLLK 
Sbjct:    6 WFPSFFMQLVT-MPTRGRPQQAAFRVSPKMTKLEVKEYLLKV 46
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BLAST of mRNA_P-wetherbeei_contig9959.1.1 vs. uniprot
Match: A0A7S2W937_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W937_9STRA)

HSP 1 Score: 46.2 bits (108), Expect = 6.940e-5
Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   22 WFPNMFMTLIS---ALPTKRTPECRFRVPPRMTKWDIKEYLLK 141
            +FPNMFMTL+S   A    + P   FRVPP MTK +IKEYL K
Sbjct:   34 FFPNMFMTLLSVRNAGSKTKAPLAIFRVPPAMTKLEIKEYLTK 76
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9959.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FL11_ECTSI1.260e-750.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3HDG0_9STRA5.280e-654.76Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A835YVT8_9STRA1.620e-552.38Ribosomal protein L23/L15e core domain-containing ... [more]
A0A7S2W937_9STRA6.940e-558.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9959contigP-wetherbeei_contig9959:369..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FL11
PFAMsRibosomal_L23
Model size145
Max annot lvl2759|Eukaryota
KEGG koko:K02892
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.06e-08
EggNOG OGs2CJ9U@1|root,2S3T6@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L25/L23
Ec32 orthologEc-21_002040.1
DescriptionRibosomal protein L23
Cds size144
COG categoryS
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187118.859746-CDS-P-wetherbeei_contig9959:368..5121683187118.859746-CDS-P-wetherbeei_contig9959:368..512Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9959 369..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9959.1.1prot_P-wetherbeei_contig9959.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9959 369..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9959.1.1

>prot_P-wetherbeei_contig9959.1.1 ID=prot_P-wetherbeei_contig9959.1.1|Name=mRNA_P-wetherbeei_contig9959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
MPSSPRVWFPNMFMTLISALPTKRTPECRFRVPPRMTKWDIKEYLLKA
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mRNA from alignment at P-wetherbeei_contig9959:369..512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9959.1.1 ID=mRNA_P-wetherbeei_contig9959.1.1|Name=mRNA_P-wetherbeei_contig9959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig9959:369..512+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCGAGCCCGCGCGTCTGGTTTCCGAACATGTTCATGACGCTGAT
CTCGGCTCTCCCGACCAAACGAACCCCAGAATGCCGATTTCGCGTCCCGC
CGCGAATGACGAAGTGGGACATCAAGGAATATCTCCTCAAGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9959:369..512+

>mRNA_P-wetherbeei_contig9959.1.1 ID=mRNA_P-wetherbeei_contig9959.1.1|Name=mRNA_P-wetherbeei_contig9959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig9959:369..512+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCGAGCCCGCGCGTCTGGTTTCCGAACATGTTCATGACGCTGAT
CTCGGCTCTCCCGACCAAACGAACCCCAGAATGCCGATTTCGCGTCCCGC
CGCGAATGACGAAGTGGGACATCAAGGAATATCTCCTCAAGGCA
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