mRNA_P-wetherbeei_contig9898.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9898.1.1
Unique NamemRNA_P-wetherbeei_contig9898.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9898.1.1 vs. uniprot
Match: A0A355UTG9_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium UBA8530 TaxID=2055790 RepID=A0A355UTG9_9CYAN)

HSP 1 Score: 200 bits (509), Expect = 1.280e-57
Identity = 143/325 (44.00%), Postives = 184/325 (56.62%), Query Frame = 1
Query:    1 RFEQKPLMAVANWGRFLCLTTLLYCLPRGYSLWVYLLLSLLLGACGALFTPARAAFLRRLLAGEDLLEAAALEGTVGFLLRLIAPAVIGVVMVLSSARLGIFVDSLFYLGSIAALWPRWVTGPWVGAESRDVLGDLVGGWRAIVASETLRRLLMLDFLTSLIGMAAWSTTAAFLETVAHVGAVNTGWLQASMGFSGALGTRLMAGRAATPWRVAWLLAG-IAGTYVLLAQATTLGGIVGVWFLRGLVIGSLVVLIAQEMAAHVPAQVMGRVQSAWDQVACLACFAGSMSTPWLLRHCGAQGSFQLFAAVMVAFVVVWWGRLLRAR 972
            RFEQ+ +M  A+  R   L  LL  L    S    L  S+  GA GA F PARAAF+RR+L G DL  A ALEGTV FL RLI+PA++G+++ +     GI  D + Y  +I  L PRWV G  +  E     G    GW  I+ S  LR LL LD    L+GMAA+S++ AFL     + A +  WL A+ G +GALGT+L AGR          L G +A TY+L+  A +LG +V +W LRG   G+L VLI Q +      QVMGRV +AW  VACLA F GS STP+LLR  G+  SF LF  + +A   +  G  + AR
Sbjct:   78 RFEQRRVMIAADSARVCFLALLLLVLAFHASFGALLAASVAFGASGAFFMPARAAFMRRVLEGADLERAIALEGTVAFLTRLISPALMGLLLAILPPVAGIAFDLVAYASAIVLLAPRWVRGT-LSVEKAADEGAWQEGWLCILRSVPLRSLLGLDLALCLVGMAAFSSSVAFLSEHLQLSAQSNCWLLAATGLTGALGTQL-AGRLGRGGGTYAALTGLVALTYLLVPHAHSLGVMVAMWGLRGFAYGALGVLINQRIVQEAAPQVMGRVNAAWSLVACLAAFFGSASTPFLLRTIGSAQSFTLFG-ITLASAAILMGAQVAAR 399          
BLAST of mRNA_P-wetherbeei_contig9898.1.1 vs. uniprot
Match: A0A1G1KKZ7_9BACT (MFS transporter n=3 Tax=unclassified Candidatus Omnitrophica TaxID=1047005 RepID=A0A1G1KKZ7_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 9.350e-10
Identity = 51/177 (28.81%), Postives = 89/177 (50.28%), Query Frame = 1
Query:   91 SLWVYLLLSLLLGACGALFTPARAAFLRRLLAG-EDLLEAAALEGTVGFLLRLIAPAVIGVVMVLSSARLGIFVDSLFYLGSIAALWPRWVTGPWVGAESRDVLGDLVGGWRAIVASETLRRLLMLDFLTSLIGMAAWSTTAAFLETVAHVGAVNTGWLQASMGFSGALGTRLMAGR 618
            S+W  + L + LG  GA   PAR AF+  +++  ED+  A AL   +    RLI P++ G+++ +    +   V+ + Y+  IAAL    +T   +  + + ++  L  G+  +  S ++R +L+L  L SL+GM+       F + + H G    G+L AS G    +G   +A R
Sbjct:  109 SVWYIIALGIFLGIIGAFDAPARHAFVVEMVSKREDVNNAVALNSLIFNAARLIGPSIAGILVAIIGEGMCFLVNGISYIAVIAALLSMRITPKIIEKQHKHIIHGLKEGFSYVFGSASMRSILLLTGLVSLMGMSYVVLMPIFAKDILHGGPNTLGFLMASSGLGALIGAVYLASR 285          
BLAST of mRNA_P-wetherbeei_contig9898.1.1 vs. uniprot
Match: A0A521KD12_9CHLR (MFS transporter n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A521KD12_9CHLR)

HSP 1 Score: 63.5 bits (153), Expect = 1.430e-7
Identity = 82/322 (25.47%), Postives = 133/322 (41.30%), Query Frame = 1
Query:    4 FEQKPLMAVANWGRFLCLTTLLYCLPRGYSLWVYLLLSLLLGACGALFTPARAAFLRRLLAGEDLLEAAALEGTVGFLLRLIAPAVIGVVMVLSSARLGIFVDSLFYLGSIAALWPRWVTGPWVGAESRDVLGDLVGGWRAIVASETLRRLLMLDFLTSLIGMAAWSTTAAFLETVAHVGAVNTGWLQASMGFSGALGTRLM-----AGRAATPWRVAWLLAGI---AGTYVLLAQATTLGGIVGVWFLRGLVIGSLVVLIAQEMAAHVPAQVMGRVQSAWDQVACLACFAGSMSTPWLLRHCGAQGSFQLFAAVMVAFVVV 945
            F  + L AV+++   L + T         ++W+ ++  +  GA  AL  PA +A L RL+    +  A AL  TV   +R++ PA+ G+++ +       FV +  +  S   L  + V    V        G ++ G R IV        + L F TS+ G +  +    F + + +VG    GW++A+ G  G LGT  +      GRA     VA  L GI   A  Y  +   T +     + F  G V    + L    +   VP ++ GRV   W     +A   G +    L    GA  +    A  + AF ++
Sbjct:   97 FWSQSLTAVSSFALALAVIT------GSVNIWMVIVWGIFTGALAALANPAYSAILPRLIEMRSMASAVALVSTVWNTMRVVGPALAGLLIAVIGIGQAFFVTAAGFALSTVLL--QMVVLKPVAPRRPGPDGGMLEGIRHIVREPIFLATIGLSFFTSVFGGSYQNLLPIFADDILNVGPQGFGWMEAAAGIGGFLGTFAIIRVGTGGRAGLTMSVAAALFGICIAAFAYSRIFPLTLI-----LLFAGGFVSSMYLNLGMTTLQLRVPDELRGRVMGVWSMTYFMAQLGG-LPAGALAHWIGAPAAVATGALSVTAFALI 404          
BLAST of mRNA_P-wetherbeei_contig9898.1.1 vs. uniprot
Match: A0A7X8ULR8_9BACT (MFS transporter n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X8ULR8_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 6.220e-7
Identity = 76/289 (26.30%), Postives = 127/289 (43.94%), Query Frame = 1
Query:   91 SLWVYLLLSLLLGACGALFTPARAAFLRRLLAGE-DLLEAAALEGTVGFLLRLIAPAVIGVVMVLSSARLGIFVDSLFYLGSIAALWPRWVTGPWVGAESRDVLGD-LVGGWRAIVASETLRRLLMLDFLTSLIGMAAWSTTAAFLETVAHVGAVNTGWLQASMGFSGALGTRLMAGRAAT-----PWRVAWLLAGIAGTYVLLAQATTLGGIVGVWFLRGLVIGSLVVLIAQEMAAHVPAQVMGRVQSAWDQVACLACFAGSMSTPWLLRHCGAQGSFQLFAAVMVAF 936
             +W  + LSL LG       P R AF+  +L    DL  A A+   V  + RL+ P + GV++ L        ++++ +L  I ALW    T   +    R  +G  L+ G+R   +S T+R LL+L  L SL+G+   +   AF+ T    G    G +Q + G     G  L+A R++         +A LL G  G   +LA + ++  I+ +  + G    ++   I   +   V  +  GRV S +          G++   W+    GA+G+  +  A  + F
Sbjct:  115 QVWHIVTLSLTLGLVNGFDMPLRQAFVVEMLEDRRDLPNAIAMNSLVFNMTRLVGPVLAGVLVALWGEGYAFLINAMTFLTVICALWMMKFTRKELPHRRRRPVGRRLMEGFRYSASSVTIRNLLLLLALVSLMGIPYGTLLPAFVATNLSRGPEMLGLVQGAAGLGAVCGAILLACRSSVLGLGRTIAMASLLFG--GALTILAMSGSIALILALMTVVGFGNMTITASINTILQTVVEDRRRGRVMSLYTMAVIGMSTLGALLMGWIASGIGARGALAIGGASCLVF 401          
BLAST of mRNA_P-wetherbeei_contig9898.1.1 vs. uniprot
Match: A0A3L7X3M5_9CHLR (MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7X3M5_9CHLR)

HSP 1 Score: 58.5 bits (140), Expect = 6.170e-6
Identity = 70/291 (24.05%), Postives = 121/291 (41.58%), Query Frame = 1
Query:   91 SLWVYLLLSLLLGACGALFTPARAAFLRRLLAGEDLLEAAALEGTVGFLLRLIAPAVIGVVMVLSSARLGIFVDSLFYLGSIAALWPRWVTGPWVGAESRDVLGDLVGGWRAIVASETLRRLLMLDFLTSLIGMAAWSTTAAFLETVAHVGAVNTGWLQASMGFSGALGTR--LMAGRAATPWRVAWLLAGIAGTYVL-LAQATTLGGIVGVWFLRGLVIGSLVVLIAQEMAAHVPAQVMGRVQSAWDQVACLACFAG---SMSTPWLLRHCGAQGSFQLFAAVMVAFVVV 945
            ++W+ +   +  GA  AL  PA +A L RL+    +  A A+  TV   +R++ PA+ GV++ +       FV +  +  +I+ +  + V    +        G ++ G R I         + L F TS+ G +  +    F + +  VG    GW++A+ G  G LGT   +  G       V  L A + G ++   A +      + + F  G V    + L    +   VP ++ GRV   W     +A   G    +   WL    GA  +  L A  + AF ++
Sbjct:  120 NIWMVIAWGVFTGALAALANPAYSAILPRLIEMRTMASAVAMVSTVWNTMRVVGPALAGVLIAVIGIGQAFFVTAAGF--AISTVLVQVVPLKPIAPRPPGPDGGMLEGIRHIAREPIFLATIGLSFFTSVFGGSYQALLPIFADDILDVGPTGFGWMEAAAGIGGFLGTFAIIRVGTGGRAGMVMSLAAALFGIFIAGFAYSRNFPLSLILLFAGGFVSSMYLNLGMTTLQLRVPDELRGRVMGVWSMTYFMAQLGGLPAGLVAEWL----GAPAAVALGALSVTAFALI 404          
BLAST of mRNA_P-wetherbeei_contig9898.1.1 vs. uniprot
Match: A0A2W1AA67_9CHLR (MFS family permease n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W1AA67_9CHLR)

HSP 1 Score: 56.2 bits (134), Expect = 3.480e-5
Identity = 69/258 (26.74%), Postives = 108/258 (41.86%), Query Frame = 1
Query:   91 SLWVYLLLSLLLGACGALFTPARAAFLRRLLAGEDLLEAAALEGTVGFLLRLIAPAVIGVVMVLSSARLGIFVDSLFYLGSIAALWPRWVTGPWVGAESRDVLGDLVGGWRAIVASETLRRLLMLDFLTSLIGMAAWSTTAAFLETVAHVGAVNTGWLQASMGFSGALGTRLMAGRAATPWRVAWLLAGIAG---TYVLLAQATTLGGIVGVWFLRGLVIGSLVVLIAQEMAAHVPAQVMGRVQSAWDQVACLACFAG 855
             LW+ ++ SL+ G   AL  PA+ A L +L+    +  A AL GTV   +R+I PA+ GVV+ +       FV ++ Y  +   L+    T P   A +    G ++ G R I        ++ L F TS+ G +       F E +  VG    G L+ + G    LGT  +    A   R   +L+G A         A +  +   +   FL G   G  + +    +   VP ++ GRV   W     L+   G
Sbjct:  121 QLWMVVVWSLVTGVLAALVAPAQQAILPQLIDMRAIASAVALNGTVWNSMRIIGPAIAGVVIAVVGIGQAFFVTTVGYAIASVLLFTL-KTKP--RATNYRGGGGMMAGVRFIFNDRLFLAVIGLSFFTSVFGGSYQVLLVFFSEDILRVGPTGFGLLEGAAGVGAILGTLSIIKIGAGRHRGFVILSGAAAFGLCVAAFAASKVMSLSMATLFLAGFSSGIYLNVGMTALQMQVPDELRGRVMGIWSMTWFLSAVGG 375          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9898.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A355UTG9_9CYAN1.280e-5744.00Uncharacterized protein n=1 Tax=Cyanobacteria bact... [more]
A0A1G1KKZ7_9BACT9.350e-1028.81MFS transporter n=3 Tax=unclassified Candidatus Om... [more]
A0A521KD12_9CHLR1.430e-725.47MFS transporter n=1 Tax=Dehalococcoidia bacterium ... [more]
A0A7X8ULR8_9BACT6.220e-726.30MFS transporter n=1 Tax=Planctomycetes bacterium T... [more]
A0A3L7X3M5_9CHLR6.170e-624.05MFS transporter n=1 Tax=Chloroflexi bacterium TaxI... [more]
A0A2W1AA67_9CHLR3.480e-526.74MFS family permease n=1 Tax=Chloroflexi bacterium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9898contigP-wetherbeei_contig9898:1..975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1236501.BAJU01000032_gene2495
PFAMsMFS_3
Model size975
Max annot lvl204441|Rhodospirillales
KEGG koko:K08217
KEGG TC2.A.1.21.1,2.A.1.21.22
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.61e-09
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,1QTX0@1224|Proteobacteria,2TX00@28211|Alphaproteobacteria,2JRSF@204441|Rhodospirillales
DescriptionTransmembrane secretion effector
Cds size954
COG categoryEGP
BRITEbr01600,ko00000,ko01504,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187115.334298-UTR-P-wetherbeei_contig9898:0..211683187115.334298-UTR-P-wetherbeei_contig9898:0..21Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9898 1..21 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187115.3468251-CDS-P-wetherbeei_contig9898:21..9751683187115.3468251-CDS-P-wetherbeei_contig9898:21..975Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9898 22..975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9898.1.1prot_P-wetherbeei_contig9898.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9898 22..975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9898.1.1

>prot_P-wetherbeei_contig9898.1.1 ID=prot_P-wetherbeei_contig9898.1.1|Name=mRNA_P-wetherbeei_contig9898.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=318bp
MAVANWGRFLCLTTLLYCLPRGYSLWVYLLLSLLLGACGALFTPARAAFL
RRLLAGEDLLEAAALEGTVGFLLRLIAPAVIGVVMVLSSARLGIFVDSLF
YLGSIAALWPRWVTGPWVGAESRDVLGDLVGGWRAIVASETLRRLLMLDF
LTSLIGMAAWSTTAAFLETVAHVGAVNTGWLQASMGFSGALGTRLMAGRA
ATPWRVAWLLAGIAGTYVLLAQATTLGGIVGVWFLRGLVIGSLVVLIAQE
MAAHVPAQVMGRVQSAWDQVACLACFAGSMSTPWLLRHCGAQGSFQLFAA
VMVAFVVVWWGRLLRAR*
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mRNA from alignment at P-wetherbeei_contig9898:1..975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9898.1.1 ID=mRNA_P-wetherbeei_contig9898.1.1|Name=mRNA_P-wetherbeei_contig9898.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=975bp|location=Sequence derived from alignment at P-wetherbeei_contig9898:1..975+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTTCGAGCAGAAGCCCCTGATGGCGGTGGCCAATTGGGGGCGCTTCCT GTGCTTGACGACTTTGCTTTATTGCTTGCCCCGGGGCTACTCGCTCTGGG TCTACCTCCTGCTGTCGCTCCTCCTCGGCGCCTGCGGTGCGCTCTTCACC CCTGCTCGGGCGGCGTTTTTGCGCCGTTTGCTGGCGGGTGAGGATCTGCT GGAGGCGGCCGCCCTGGAGGGGACCGTGGGGTTCCTTTTGCGGTTGATCG CTCCTGCCGTGATCGGCGTGGTGATGGTGCTCTCGAGCGCCCGGCTGGGG ATTTTCGTGGACTCGCTGTTTTATCTGGGCTCGATCGCGGCTCTGTGGCC TCGCTGGGTCACCGGGCCCTGGGTGGGCGCCGAGTCGCGCGATGTGCTCG GGGATCTGGTGGGGGGCTGGCGCGCGATTGTGGCCTCGGAAACTCTGCGC AGGCTCTTGATGCTGGACTTCCTGACTTCGCTGATCGGGATGGCGGCCTG GTCGACAACGGCGGCATTCCTGGAGACGGTGGCTCACGTGGGCGCCGTGA ACACGGGTTGGCTGCAGGCCTCAATGGGCTTTTCGGGGGCGCTGGGGACA CGGTTGATGGCGGGTCGCGCGGCCACTCCCTGGCGGGTGGCCTGGCTGCT CGCGGGGATCGCGGGGACCTATGTTCTGCTGGCTCAGGCCACGACGCTAG GGGGGATCGTGGGCGTGTGGTTCCTGCGGGGTCTGGTGATCGGCTCGCTG GTCGTGCTGATCGCCCAGGAGATGGCCGCCCATGTGCCCGCTCAGGTGAT GGGCCGGGTGCAGTCGGCCTGGGATCAGGTGGCCTGTCTGGCCTGCTTTG CGGGCTCGATGTCCACCCCCTGGCTGCTGCGCCACTGCGGCGCGCAGGGC TCGTTTCAGCTGTTCGCGGCTGTGATGGTGGCCTTCGTCGTGGTCTGGTG GGGGAGATTGCTGCGGGCGCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9898:1..975+

>mRNA_P-wetherbeei_contig9898.1.1 ID=mRNA_P-wetherbeei_contig9898.1.1|Name=mRNA_P-wetherbeei_contig9898.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=954bp|location=Sequence derived from alignment at P-wetherbeei_contig9898:1..975+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGTGGCCAATTGGGGGCGCTTCCTGTGCTTGACGACTTTGCTTTA
TTGCTTGCCCCGGGGCTACTCGCTCTGGGTCTACCTCCTGCTGTCGCTCC
TCCTCGGCGCCTGCGGTGCGCTCTTCACCCCTGCTCGGGCGGCGTTTTTG
CGCCGTTTGCTGGCGGGTGAGGATCTGCTGGAGGCGGCCGCCCTGGAGGG
GACCGTGGGGTTCCTTTTGCGGTTGATCGCTCCTGCCGTGATCGGCGTGG
TGATGGTGCTCTCGAGCGCCCGGCTGGGGATTTTCGTGGACTCGCTGTTT
TATCTGGGCTCGATCGCGGCTCTGTGGCCTCGCTGGGTCACCGGGCCCTG
GGTGGGCGCCGAGTCGCGCGATGTGCTCGGGGATCTGGTGGGGGGCTGGC
GCGCGATTGTGGCCTCGGAAACTCTGCGCAGGCTCTTGATGCTGGACTTC
CTGACTTCGCTGATCGGGATGGCGGCCTGGTCGACAACGGCGGCATTCCT
GGAGACGGTGGCTCACGTGGGCGCCGTGAACACGGGTTGGCTGCAGGCCT
CAATGGGCTTTTCGGGGGCGCTGGGGACACGGTTGATGGCGGGTCGCGCG
GCCACTCCCTGGCGGGTGGCCTGGCTGCTCGCGGGGATCGCGGGGACCTA
TGTTCTGCTGGCTCAGGCCACGACGCTAGGGGGGATCGTGGGCGTGTGGT
TCCTGCGGGGTCTGGTGATCGGCTCGCTGGTCGTGCTGATCGCCCAGGAG
ATGGCCGCCCATGTGCCCGCTCAGGTGATGGGCCGGGTGCAGTCGGCCTG
GGATCAGGTGGCCTGTCTGGCCTGCTTTGCGGGCTCGATGTCCACCCCCT
GGCTGCTGCGCCACTGCGGCGCGCAGGGCTCGTTTCAGCTGTTCGCGGCT
GTGATGGTGGCCTTCGTCGTGGTCTGGTGGGGGAGATTGCTGCGGGCGCG
CTGA
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