mRNA_P-wetherbeei_contig9860.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9860.1.1
Unique NamemRNA_P-wetherbeei_contig9860.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9860.1.1 vs. uniprot
Match: UPI0019C87C7A (DUF4340 domain-containing protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019C87C7A)

HSP 1 Score: 113 bits (283), Expect = 3.990e-28
Identity = 57/100 (57.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 MNKQFLVILGVLVVVVGGGALLVFKQDESARPAVVSQLGQPLLKGLKASEVASISIREPKQSLTLAKKDGRWTIAEKSGFAADLDRVTDLVVKAIELKAG 300
            M+ + L ++ VL+V +GGGALL+ +Q  S +PA    LGQP+ KGL+AS+VA+++IR+PK++LT+AKKD RWTIAE+ GF ADLD+V D VVKA+ LK G
Sbjct:    1 MSARLLGVMLVLLVALGGGALLMRQQAASQKPAGEGTLGQPVFKGLQASQVAAVAIRQPKETLTIAKKDERWTIAERGGFPADLDKVRDFVVKAMALKVG 100
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BLAST of mRNA_P-wetherbeei_contig9860.1.1 vs. uniprot
Match: A0A1F3YLI8_9PROT (DUF4340 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YLI8_9PROT)

HSP 1 Score: 110 bits (275), Expect = 5.870e-27
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 MNKQFLVILGVLVVVVGGGALLVFKQDESARPAVVSQLGQPLLKGLKASEVASISIREPKQSLTLAKKDGRWTIAEKSGFAADLDRVTDLVVKAIELKAG 300
            MN +    L VL+ V+GGGALLV  Q +S +      LGQPLLKGL+AS+VASI IREP+ ++T+AKKD RWTIAE+ GF AD D+V D V+KAI LK G
Sbjct:    1 MNARIAAALLVLLSVLGGGALLVRNQTDSRKSPDAGTLGQPLLKGLQASQVASIVIREPRDAITIAKKDERWTIAERDGFPADYDKVRDFVLKAIALKIG 100
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BLAST of mRNA_P-wetherbeei_contig9860.1.1 vs. uniprot
Match: A0A1G4AIE1_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium RIFCSPLOWO2_12_FULL_64_8 TaxID=1802434 RepID=A0A1G4AIE1_9BACT)

HSP 1 Score: 103 bits (256), Expect = 1.290e-26
Identity = 52/100 (52.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    1 MNKQFLVILGVLVVVVGGGALLVFKQDESARPAVVSQLGQPLLKGLKASEVASISIREPKQSLTLAKKDGRWTIAEKSGFAADLDRVTDLVVKAIELKAG 300
            MN +   +L VL++ +GGGAL++ +Q +S RPA    LGQP+LKGL+A+ VA I IREP  +LTL +K+ +WTIAE+  F AD+++V +LV+KA+ELK G
Sbjct:    1 MNARVAGVLLVLLLALGGGALILNQQGQSRRPANADALGQPILKGLQAASVAGIVIREPGATLTLQRKEQQWTIAERGAFPADIEKVRELVLKALELKVG 100
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BLAST of mRNA_P-wetherbeei_contig9860.1.1 vs. uniprot
Match: A0A1F4E2D1_9PROT (DUF4340 domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4E2D1_9PROT)

HSP 1 Score: 108 bits (270), Expect = 3.140e-26
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 MNKQFLVILGVLVVVVGGGALLVFKQDESARPAVVSQLGQPLLKGLKASEVASISIREPKQSLTLAKKDGRWTIAEKSGFAADLDRVTDLVVKAIELKAG 300
            MN +   IL +L+ V+GGGALL  +Q ++ RPA    LGQ LLKGLKA+EV++I IREP  +LTL ++  RW +AE+ GF ADLDRV D V+KA+ELK G
Sbjct:    1 MNARVAAILILLLAVLGGGALLYHQQGQTQRPAEAGALGQTLLKGLKAAEVSAIQIREPGSTLTLERRGERWVVAERDGFPADLDRVRDFVLKALELKIG 100
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BLAST of mRNA_P-wetherbeei_contig9860.1.1 vs. uniprot
Match: A0A536WP54_9PROT (DUF4340 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WP54_9PROT)

HSP 1 Score: 103 bits (257), Expect = 2.390e-24
Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 MNKQFLVILGVLVVVVGGGALLVFKQDESARPAVVSQLGQPLLKGLKASEVASISIREPKQSLTLAKKDGRWTIAEKSGFAADLDRVTDLVVKAIELKAG 300
            MN +  ++L VL+VV+GGGAL+   Q+ + RP  ++ LG+PLLK LKA++VA+I + EPK  LTL +KD  W IAE+ GF ADL RV +LVVK IELK G
Sbjct:    1 MNARLALVLVVLLVVLGGGALVYRYQENARRPQNLASLGRPLLKDLKAADVATIKLVEPKAMLTLQRKDDGWVIAERRGFPADLARVRELVVKLIELKVG 100
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BLAST of mRNA_P-wetherbeei_contig9860.1.1 vs. uniprot
Match: A0A537AAP6_9PROT (DUF4340 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AAP6_9PROT)

HSP 1 Score: 98.2 bits (243), Expect = 2.040e-22
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 MNKQFLVILGVLVVVVGGGALLVFKQDESARPAVVSQLGQPLLKGLKASEVASISIREPKQSLTLAKKDGRWTIAEKSGFAADLDRVTDLVVKAIELKAG 300
            MN +  V+L VL+ V+GGGALL   Q+ + RP  VS LG+PLLK LKA+++A+I I EPK +LT+ +KD  W IAE+ GF AD+ +V +  +K I+LK G
Sbjct:    1 MNARVAVVLVVLLAVLGGGALLYSYQERTRRPENVSALGKPLLKELKAADIAAIRIVEPKATLTIQRKDDGWVIAERRGFPADVAKVREFALKLIDLKVG 100
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BLAST of mRNA_P-wetherbeei_contig9860.1.1 vs. uniprot
Match: A0A536XUY2_9PROT (DUF4340 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XUY2_9PROT)

HSP 1 Score: 93.2 bits (230), Expect = 5.320e-20
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   52 GGALLVFKQDESARPAVVSQLGQPLLKGLKASEVASISIREPKQSLTLAKKDGRWTIAEKSGFAADLDRVTDLVVKAIELKAG 300
            GGAL+   Q+ + RP  V+ LG+PLLK LKA++VA+I + EPK +LTL +KD  W IAE+ GF ADL RV +LVVK IELK G
Sbjct:  605 GGALVYRYQENARRPQNVASLGRPLLKDLKAADVAAIKLVEPKATLTLQRKDDGWVIAERRGFPADLARVRELVVKLIELKVG 687
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BLAST of mRNA_P-wetherbeei_contig9860.1.1 vs. uniprot
Match: A0A1F4F0J4_9PROT (DUF4340 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F0J4_9PROT)

HSP 1 Score: 84.7 bits (208), Expect = 2.980e-17
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   82 ESARPAVVSQLGQPLLKGLKASEVASISIREPKQSLTLAKKDGRWTIAEKSGFAADLDRVTDLVVKAIELKAG 300
            ++ RP+ V  LGQ LLK LKAS+VASI I EPK +LTL +++ RWTIAE +GF AD  RV + VVKA+ELK G
Sbjct:   37 KARRPSNVGTLGQKLLKELKASDVASIRIVEPKATLTLQRREDRWTIAELAGFPADYARVREFVVKALELKVG 109
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BLAST of mRNA_P-wetherbeei_contig9860.1.1 vs. uniprot
Match: A0A1F4BHY0_9PROT (DUF4340 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_19 TaxID=1797491 RepID=A0A1F4BHY0_9PROT)

HSP 1 Score: 83.2 bits (204), Expect = 9.320e-17
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:   73 KQDESARPAVVSQLGQPLLKGLKASEVASISIREPKQSLTLAKKDGRWTIAEKSGFAADLDRVTDLVVKAIELKAG 300
            +Q +S RPA  + LG+ LL GLKA+EV +I IREPK +LT+  KD RW IAE++ + ADL RV + V+ AIELK G
Sbjct:   25 QQGQSQRPAKAAALGRTLLAGLKAAEVRAIHIREPKAALTVELKDERWVIAERAAYPADLTRVREFVLAAIELKIG 100
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BLAST of mRNA_P-wetherbeei_contig9860.1.1 vs. uniprot
Match: A0A537C8T4_9PROT (DUF4340 domain-containing protein n=5 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537C8T4_9PROT)

HSP 1 Score: 79.7 bits (195), Expect = 1.380e-15
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:   73 KQDESARPAVVSQLGQPLLKGLKASEVASISIREPKQSLTLAKKDGRWTIAEKSGFAADLDRVTDLVVKAIELKAG 300
            +++ S  PA    LGQPLLK LK SEVASI I EPK +LTL +K+  W IAE+ GF ADL +V   V++A+ LK G
Sbjct:   25 QKERSRSPANAGTLGQPLLKDLKVSEVASIRIVEPKATLTLQRKEEGWVIAERDGFPADLGKVRGFVLQALGLKVG 100
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9860.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
UPI0019C87C7A3.990e-2857.00DUF4340 domain-containing protein n=1 Tax=Candidat... [more]
A0A1F3YLI8_9PROT5.870e-2759.00DUF4340 domain-containing protein n=1 Tax=Betaprot... [more]
A0A1G4AIE1_9BACT1.290e-2652.00Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A1F4E2D1_9PROT3.140e-2656.00DUF4340 domain-containing protein n=2 Tax=unclassi... [more]
A0A536WP54_9PROT2.390e-2455.00DUF4340 domain-containing protein n=1 Tax=Betaprot... [more]
A0A537AAP6_9PROT2.040e-2251.00DUF4340 domain-containing protein n=1 Tax=Betaprot... [more]
A0A536XUY2_9PROT5.320e-2057.83DUF4340 domain-containing protein n=1 Tax=Betaprot... [more]
A0A1F4F0J4_9PROT2.980e-1760.27DUF4340 domain-containing protein n=1 Tax=Betaprot... [more]
A0A1F4BHY0_9PROT9.320e-1755.26DUF4340 domain-containing protein n=1 Tax=Betaprot... [more]
A0A537C8T4_9PROT1.380e-1553.95DUF4340 domain-containing protein n=5 Tax=Betaprot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9860contigP-wetherbeei_contig9860:1..300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1396141.BATP01000019_gene1719
PFAMsDUF4340
Model size300
Max annot lvl203494|Verrucomicrobiae
Hectar predicted targeting categorysignal peptide
Exons1
Evalue7.11e-07
EggNOG OGs2DTXG@1|root,33N3G@2|Bacteria,46WXU@74201|Verrucomicrobia,2IVTG@203494|Verrucomicrobiae
DescriptionDomain of unknown function (DUF4340)
Cds size300
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.7144532-CDS-P-wetherbeei_contig9860:0..3001683187113.7144532-CDS-P-wetherbeei_contig9860:0..300Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9860 1..300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9860.1.1prot_P-wetherbeei_contig9860.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9860 1..300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9860.1.1

>prot_P-wetherbeei_contig9860.1.1 ID=prot_P-wetherbeei_contig9860.1.1|Name=mRNA_P-wetherbeei_contig9860.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
MNKQFLVILGVLVVVVGGGALLVFKQDESARPAVVSQLGQPLLKGLKASE
VASISIREPKQSLTLAKKDGRWTIAEKSGFAADLDRVTDLVVKAIELKAG
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mRNA from alignment at P-wetherbeei_contig9860:1..300-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9860.1.1 ID=mRNA_P-wetherbeei_contig9860.1.1|Name=mRNA_P-wetherbeei_contig9860.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig9860:1..300- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAAGCAGTTCCTCGTCATCCTGGGCGTGCTGGTCGTCGTAGTCGG
CGGCGGCGCGCTGCTGGTTTTCAAGCAGGACGAGTCGGCCCGGCCCGCGG
TCGTTTCGCAGCTCGGCCAGCCCCTGCTCAAGGGCCTCAAGGCCAGCGAA
GTCGCGAGCATCTCGATCCGCGAGCCCAAGCAATCGCTGACGCTCGCGAA
GAAAGACGGCCGTTGGACGATCGCCGAAAAAAGCGGCTTTGCCGCCGACC
TTGACCGCGTGACCGACCTCGTCGTGAAAGCGATCGAGCTCAAGGCAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9860:1..300-

>mRNA_P-wetherbeei_contig9860.1.1 ID=mRNA_P-wetherbeei_contig9860.1.1|Name=mRNA_P-wetherbeei_contig9860.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig9860:1..300- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAAGCAGTTCCTCGTCATCCTGGGCGTGCTGGTCGTCGTAGTCGG
CGGCGGCGCGCTGCTGGTTTTCAAGCAGGACGAGTCGGCCCGGCCCGCGG
TCGTTTCGCAGCTCGGCCAGCCCCTGCTCAAGGGCCTCAAGGCCAGCGAA
GTCGCGAGCATCTCGATCCGCGAGCCCAAGCAATCGCTGACGCTCGCGAA
GAAAGACGGCCGTTGGACGATCGCCGAAAAAAGCGGCTTTGCCGCCGACC
TTGACCGCGTGACCGACCTCGTCGTGAAAGCGATCGAGCTCAAGGCAGGC
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