mRNA_P-wetherbeei_contig9742.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9742.1.1
Unique NamemRNA_P-wetherbeei_contig9742.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9742.1.1 vs. uniprot
Match: A0A6C2YXX3_9BACT (Uncharacterized protein n=1 Tax=Tuwongella immobilis TaxID=692036 RepID=A0A6C2YXX3_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 3.400e-6
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:   19 LTPAVF-WDGGASTFSWLDPLNWSTDLLPGSGQSVTIGSGYSGITVTLTGLSNINSLTSYAGITLGAGGQL 228
            +TPA+  WDGG     W +PLNWS++ LPG+   V IG  ++ + +TL   + + S+TS + I + + G L
Sbjct:   18 ITPAIVSWDGGGGNLLWSNPLNWSSNQLPGAADDVIIGDAFADVDITLGFTTKVASVTSKSDIFITSAGTL 88
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9742.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6C2YXX3_9BACT3.400e-638.03Uncharacterized protein n=1 Tax=Tuwongella immobil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9742contigP-wetherbeei_contig9742:922..1197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1123508.JH636447_gene7857
PFAMsHemolysinCabind,Laminin_G_3
Model size276
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.2e-07
EggNOG OGsCOG2931@1|root,COG3291@1|root,COG2931@2|Bacteria,COG3291@2|Bacteria,2IZ0P@203682|Planctomycetes
DescriptionHaemolysin-type calcium-binding repeat (2 copies)
Cds size276
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187107.8432763-CDS-P-wetherbeei_contig9742:921..11971683187107.8432763-CDS-P-wetherbeei_contig9742:921..1197Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9742 922..1197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9742.1.1prot_P-wetherbeei_contig9742.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9742 922..1197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9742.1.1

>prot_P-wetherbeei_contig9742.1.1 ID=prot_P-wetherbeei_contig9742.1.1|Name=mRNA_P-wetherbeei_contig9742.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MPFLPALTPAVFWDGGASTFSWLDPLNWSTDLLPGSGQSVTIGSGYSGIT
VTLTGLSNINSLTSYAGITLGAGGQLTMTSGSSIYNTLTVNG
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mRNA from alignment at P-wetherbeei_contig9742:922..1197-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9742.1.1 ID=mRNA_P-wetherbeei_contig9742.1.1|Name=mRNA_P-wetherbeei_contig9742.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig9742:922..1197- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCTTCCTGCCGGCGCTGACGCCCGCCGTTTTCTGGGACGGCGGCGC
AAGCACATTCAGCTGGCTCGATCCGTTGAACTGGAGCACCGACCTGCTGC
CGGGTTCCGGGCAGAGCGTGACCATCGGTTCCGGTTATTCCGGCATTACC
GTTACGCTGACGGGCCTATCCAACATCAACTCGCTCACCAGCTACGCCGG
CATTACGCTCGGCGCGGGCGGCCAGCTGACGATGACGAGTGGGTCTTCGA
TCTACAATACCCTGACCGTTAACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9742:922..1197-

>mRNA_P-wetherbeei_contig9742.1.1 ID=mRNA_P-wetherbeei_contig9742.1.1|Name=mRNA_P-wetherbeei_contig9742.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig9742:922..1197- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCTTCCTGCCGGCGCTGACGCCCGCCGTTTTCTGGGACGGCGGCGC
AAGCACATTCAGCTGGCTCGATCCGTTGAACTGGAGCACCGACCTGCTGC
CGGGTTCCGGGCAGAGCGTGACCATCGGTTCCGGTTATTCCGGCATTACC
GTTACGCTGACGGGCCTATCCAACATCAACTCGCTCACCAGCTACGCCGG
CATTACGCTCGGCGCGGGCGGCCAGCTGACGATGACGAGTGGGTCTTCGA
TCTACAATACCCTGACCGTTAACGGC
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