mRNA_P-wetherbeei_contig9711.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9711.1.1
Unique NamemRNA_P-wetherbeei_contig9711.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9711.1.1 vs. uniprot
Match: A0A836CFL8_9STRA (Fcf1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL8_9STRA)

HSP 1 Score: 170 bits (431), Expect = 3.010e-49
Identity = 92/183 (50.27%), Postives = 126/183 (68.85%), Query Frame = 1
Query:    1 MRVSRGKQYRKHLRFYRLVYGVAPPYK--LNGNFIHACLSCKVDILERVTALLQGNKVRLLVPRRVLEELEALGAGFEAALNFARTACRVARDGAETAADASAQILSLVGDENEKKYIVASQDPELRSRLRGVAACPLLHLSRTVLLMEAPSGAAKANLERREQQKAAPAAGEAELIVCVRRE 543
            MR++R KQYR+ LRF+R+VYGV  PYK  L+GNFIHACL+ KV++ ER+ A+LQG K +LLVP+  ++EL ALG  F+AA  FA  +C+   + A      + QI +L+  +N  +YIVASQD ELR++LR VA CPLL+LS+TVLLME  SG  KA  E  E++K      E  ++  +R+E
Sbjct:    1 MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYKLLVPKTAIDELRALGEKFQAAAAFATRSCQTITEHAPGKGSPAEQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFEALERRKTGVTEEETAIVEQLRQE 183          
BLAST of mRNA_P-wetherbeei_contig9711.1.1 vs. uniprot
Match: A0A6H5KVJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ1_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 5.330e-47
Identity = 94/202 (46.53%), Postives = 126/202 (62.38%), Query Frame = 1
Query:    1 MRVSRGKQYRKHLRFYRLVYGVAPPYK--LNGNFIHACLSCKVDILERVTALLQGNKVRLLVPRRVLEELEALGAGFEAALNFARTACR----------------------VARDGAETAADASAQILSLVGDENEKKYIVASQDPELRSRLRGVAACPLLHLSRTVLLMEAPSGAAKANLERREQQKAAPAAGEAELIVCV 534
            MRV+R KQYR+HLRF+R+VYG++ PYK  L+GNFIH C+S KVDI +R+T++LQG K+ L VPR   EEL+ALG  F+ A NFA   CR                            E   D + +I++ +G +NE KY+VASQD  LR RLR V  CPL+ +SRTVL+ME PSG +KA  E+ E++KA     E + ++ V
Sbjct:    1 MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISSKVDIEKRLTSVLQGAKMHLFVPRSAREELKALGPEFQKAYNFAIGHCRGLPPPRNENQAGGAXXXXXXXXXXXXXGEKGPDPAKEIIAAIGADNEGKYLVASQDENLRMRLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAERKKAVGTTEEEDRVLAV 202          
BLAST of mRNA_P-wetherbeei_contig9711.1.1 vs. uniprot
Match: A0A7S2B5Q5_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B5Q5_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.170e-42
Identity = 101/220 (45.91%), Postives = 136/220 (61.82%), Query Frame = 1
Query:    1 MRVSRGKQYRKHLRFYRLVYGVAPPYK--LNGNFIHACLSCKVDILERVTALLQGNKVRLLVPRRVLEELEALGAGFEAALNFARTACRV-ARDGAETAADASAQILSLVGDENEKKYIVASQDPELRSRLRGVAACPLLHLSRTVLLMEAPSGAAKANLERREQQKAAPAAGEAELIVCVR--REAAAGRAERRAAQGTGQRIKRPASGPNPLSCKKRK 645
            MR+ RGK+ RK L F+RL +G++PPY+  L+GNFIH C S K+DIL R+   L G K  L VP  V+ ELE LG   + AL FA   C V A D AE+    SA IL L+G++N + Y+VASQD +LR  LR +   PL+ + RTVL++E+   A+K    + E +K A    E++ +  VR  RE A   A+R   +G  QR K+ A G NPLSCKK+K
Sbjct:    1 MRLLRGKKARKTLAFFRLNFGISPPYRVLLDGNFIHECTSYKIDILARLGKQLGGEKFMLYVPSCVISELEMLGTNMKPALTFALENCEVVACDSAESC---SAGILGLIGEKNAEGYLVASQDEDLRCELRAIPGVPLMFIKRTVLILESTGHASKTATVQMETKKVAVVGDESKAMGLVRQIREEAKS-AQRLRVEGHSQRPKKRAKGANPLSCKKKK 216          
BLAST of mRNA_P-wetherbeei_contig9711.1.1 vs. uniprot
Match: W7T2Y0_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Y0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 6.540e-31
Identity = 83/225 (36.89%), Postives = 125/225 (55.56%), Query Frame = 1
Query:   28 RKHLRFYRLVYGVAPPYKL--NGNFIHACLSCKVDILERVTALLQGNKVRLLVPRRVLEELEALGAGFEAALNFARTACRVAR---------DGAETAADASAQILSLVGDENEKKYIVASQDPELRSRLRGVAACPLLHLSRTVLLMEAPSGAAKANLERREQQKAAPAAGEAELIVCVRRE----------AAAGRAERRAAQGTGQRIKRPASGPNPLSCKK 639
            RK LRFYR+VYG+ PPYK+  +GNFIH  L  K+DI +R+  +L    +    P+ VL+EL A+G  F AA  + ++ C +           D  +    A A I ++VG++N  KY+VA+QD EL++RLR V +  LL +SR V LMEAPS +++    ++E +K      E   ++   R           + A   +++A   +  R+K+ A GPNPLS KK
Sbjct:    2 RKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENLACYAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSRVRLKKRAKGPNPLSVKK 226          
BLAST of mRNA_P-wetherbeei_contig9711.1.1 vs. uniprot
Match: H3GG59_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GG59_PHYRM)

HSP 1 Score: 113 bits (283), Expect = 3.190e-27
Identity = 90/226 (39.82%), Postives = 124/226 (54.87%), Query Frame = 1
Query:    1 MRVSRGKQYRKHLRFYRLVYGVAPPYK--LNGNFIHACLSCKVDILERVTALLQ--GNKVRLLVPRRVLEELEALGAGFEAALNFARTACRVAR-------DGAETAADASAQILSLVGDENEKKYIVASQDPELRSRLRGVAACPLLHLSRTVLLMEAPSGAAKANLERREQQKAAPAAGEAELIVCVRREA-AAGRAERRAAQGTGQRI-KRPASGPNPLSCKK 639
            MR  R K  RK LR +  + G+ PPYK  L+GNFI  C+  KVD+ ERV   LQ   ++    VPR  LEEL+ LG   + A + A+T  +VA        DG E   D S  I S++GD+N++K++V +Q+ ELR  LR V   PL +L+R+VL+ E  S A  A + + E+      A   +L V  +R+       E   AQ   QR+ K+ A GPNPLS KK
Sbjct:    1 MRYLRAKGIRKALRQFHFLCGIKPPYKVLLDGNFIAMCMQMKVDVRERVPKYLQVKPHECEFFVPRAALEELQMLGEATKEAYDLAKT-FKVAEAYDLQQEDGDEAPVDVSKCIQSIIGDKNDRKFVVCTQEVELRKALRLVPGVPLFYLNRSVLVFEEISRATVAIVRQEEK------ANMVKLDVNEKRKLDQMQEGENGEAQDEQQRLAKKRAKGPNPLSMKK 219          
BLAST of mRNA_P-wetherbeei_contig9711.1.1 vs. uniprot
Match: A0A024T8F2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T8F2_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.930e-27
Identity = 87/222 (39.19%), Postives = 120/222 (54.05%), Query Frame = 1
Query:    1 MRVSRGKQYRKHLRFYRLVYGVAPPYK--LNGNFIHACLSCKVDILERVTALLQGNKVRLLVPRRVLEELEALG------AGFEAALNFARTACRVARDGAETAADASAQILSLVGDENEKKYIVASQDPELRSRLRGVAACPLLHLSRTVLLMEAPSGAAKANLERREQQKAAPA-AGEAELIVCVRREAAAGRAERRAAQGTGQRIKRPASGPNPLSCKK 639
            MR  R K  RK LR ++ + G+ PPYK  L+GNFI  C+   VDI  R+   LQ N     V R VL+EL+ L       A +EAA +F      V     +   DA+  +L+ +G  N++K+IVA+Q+ ELRS+LR V   PL++L+R+VL+ E  S A      + +  KAA   AGE   +     EA A    R A +   + +KR A GPNPLS KK
Sbjct:    1 MRYLRAKHIRKALRQFQFLCGIKPPYKVLLDGNFIAMCIKMHVDIAVRLPTFLQTNNCTYFVTRAVLDELKLLSDNADMRAAWEAASSF-----EVVEGDPDATNDATNSMLAAIGSRNDRKFIVATQETELRSQLRRVPGVPLIYLNRSVLVFEDMSEATLRISRKDDHAKAAKLNAGEKRKL-----EAVASSTVREAPEKKSRLVKR-AKGPNPLSVKK 211          
BLAST of mRNA_P-wetherbeei_contig9711.1.1 vs. uniprot
Match: A0A1V9YHZ0_9STRA (rRNA-processing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YHZ0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 5.070e-26
Identity = 88/221 (39.82%), Postives = 121/221 (54.75%), Query Frame = 1
Query:    1 MRVSRGKQYRKHLRFYRLVYGVAPPYK--LNGNFIHACLSCKVDILERVTALLQGNKVRLLVPRRVLEELEALGAGFE---AALNFARTACRVARDGAETAADASAQILSLVGDENEKKYIVASQDPELRSRLRGVAACPLLHLSRTVLLMEAPSGAAKANLERREQQKAAPA-AGEAELIVCVRREAAAGRAERRAAQGTG--QRIKRPASGPNPLSCKK 639
            MR  R K  RK LR ++ + G+ PPYK  L+GNFI  CL   VDI  RV   LQ +K   +V    + EL+ LGA  +   AA N A+T   V  DG+    D +A +L+ VG+ NE+KYIVA+Q+ ELR+ LR V   PL++L+R+VL+ E  S A      + +  K     AGE   +  V +      AE R  + +G   R+ + A  PNPLS KK
Sbjct:    1 MRYLRSKHIRKALRQFQFLCGIKPPYKVLLDGNFIAMCLKMNVDIATRVPKFLQTDKCIFMVTAAAVNELKVLGAADKDMLAAWNLAKTFQTV--DGSGD--DVTAAMLAAVGERNERKYIVATQETELRAALRRVPGVPLIYLNRSVLVFEDMSEATLRISRKEDHLKMTKLNAGEESKLQAVLK------AEVRTPEDSGVKARLHKKAKAPNPLSMKK 211          
BLAST of mRNA_P-wetherbeei_contig9711.1.1 vs. uniprot
Match: A0A0P1B478_PLAHL (Uncharacterized proteins of PilT N-term./Vapc superfamily n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B478_PLAHL)

HSP 1 Score: 109 bits (273), Expect = 1.120e-25
Identity = 84/230 (36.52%), Postives = 126/230 (54.78%), Query Frame = 1
Query:    1 MRVSRGKQYRKHLRFYRLVYGVAPPYK--LNGNFIHACLSCKVDILERVTALLQ--GNKVRLLVPRRVLEELEALGAGFEAALNFART-----ACRVARDGAETAADASAQILSLVGDENEKKYIVASQDPELRSRLRGVAACPLLHLSRTVLLMEAPSGAAKANLERREQQKAAPAAGEAELIVCVRREAA--------AGRAERRAAQGTGQRIKRPASGPNPLSCKK 639
            MR  R K  RK LR +  + G+ PPYK  L+GNFI  C+  KV++ ERV+  LQ   ++    VPR VL+EL+ LG   + A + A++         A D  +   D S  I +++GD+N++K+ V +Q+ ELR  LR V   PL++L+R+VL+ E  S A  A + + E+      A  A+L + V+R+           G AE+      G+ +K+ A GPNPLS KK
Sbjct:    1 MRYLRAKGIRKALRQFHFLCGIKPPYKVLLDGNFIAMCIQMKVNVNERVSKYLQVKQHECEFYVPRAVLDELKTLGEATKEAYHLAKSFKVAEVFGQAEDDKQVTVDVSKYIQTIIGDKNDRKFFVCTQEVELRKALRLVPGVPLIYLNRSVLVFEEISRATLAIVRQEEE------ANMAKLDINVKRKLEQIQENKHETGYAEQ------GRIVKKRAKGPNPLSFKK 218          
BLAST of mRNA_P-wetherbeei_contig9711.1.1 vs. uniprot
Match: A0A2D4BNT9_PYTIN (rRNA-processing protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNT9_PYTIN)

HSP 1 Score: 109 bits (272), Expect = 1.940e-25
Identity = 84/223 (37.67%), Postives = 121/223 (54.26%), Query Frame = 1
Query:    1 MRVSRGKQYRKHLRFYRLVYGVAPPYKL--NGNFIHACLSCKVDILERVTALLQ--GNKVRLLVPRRVLEELEALGAGFEAALNFARTACRVARD-----GAETAADASAQILSLVGDENEKKYIVASQDPELRSRLRGVAACPLLHLSRTVLLMEAPSGAAKANLERREQQKAAPA-AGEAELIVCVRREAAAGRAERRAAQGTGQRIKRPASGPNPLSCKK 639
            MR  R K  RK LR +  + G+ PPYK+  +GNF+  CL  KVD+ ERV   LQ   ++    + R  + ELE LG     A++ A++  RV  +       + A D +  + SLVGD NE+K++VA+Q+ ELR  LR V   PL++L+R+VL+ E  S A  A + + E+ K A     E   +  V  +++ G A+  A      R K  A  PNPLSCKK
Sbjct:    1 MRYLRAKGIRKALRQFHFLCGIKPPYKVLVDGNFLAMCLQMKVDVRERVPKFLQVKPHQCEFYIARAAVNELELLGDAMREAVDIAKS-FRVIEERDYAAAVDDAKDVTXVLQSLVGDRNERKFVVATQEVELRKALRLVPGVPLIYLNRSVLVFEDVSKATLAIVRQEEKAKMAKLDVNEKRKLESVVSDSSPGDADAAAPA----RKKHRAKAPNPLSCKK 218          
BLAST of mRNA_P-wetherbeei_contig9711.1.1 vs. uniprot
Match: G4YZS4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YZS4_PHYSP)

HSP 1 Score: 108 bits (271), Expect = 2.210e-25
Identity = 88/225 (39.11%), Postives = 123/225 (54.67%), Query Frame = 1
Query:    1 MRVSRGKQYRKHLRFYRLVYGVAPPYK--LNGNFIHACLSCKVDILERVTALLQ--GNKVRLLVPRRVLEELEALGAG----FEAALNF--ARTACRVARDGAETAADASAQILSLVGDENEKKYIVASQDPELRSRLRGVAACPLLHLSRTVLLMEAPSGAAKANLERREQQKAAPAAGEAELIVCVRR--EAAAGRAERRAAQGTGQRIKRPASGPNPLSCKK 639
            MR  R K  RK LR +  + G+ PPYK  L+GNFI  C+  KVD+ ERV   LQ   ++V   VPR  LEEL+ LG      +E A NF  A    +   DG +   D S  + S++GD+N++K++V +Q+ ELR  LR V   PL++L+R+VL+ E  S A  A + + E+      A  A+L V  +R  E   G  E    +   +  K+ A GPNPLS KK
Sbjct:    1 MRYLRAKGIRKALRQFHFLCGIKPPYKVLLDGNFIAMCVQMKVDVQERVPKFLQVKAHEVEFYVPRAALEELKMLGEATKEAYELAQNFKVAEVYDQPKTDG-DAPVDVSKVVQSIIGDKNDRKFVVCTQEVELRKALRLVPGVPLIYLNRSVLVFEDISRATLAIVRQDEK------ANMAKLDVNEKRKLEQMQGGEEGEDHEEKQRLTKKRAKGPNPLSMKK 218          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9711.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFL8_9STRA3.010e-4950.27Fcf1-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6H5KVJ1_9PHAE5.330e-4746.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2B5Q5_9STRA1.170e-4245.91Hypothetical protein n=3 Tax=Dictyocha speculum Ta... [more]
W7T2Y0_9STRA6.540e-3136.89Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
H3GG59_PHYRM3.190e-2739.82Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A024T8F2_9STRA4.930e-2739.19Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A1V9YHZ0_9STRA5.070e-2639.82rRNA-processing protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A0P1B478_PLAHL1.120e-2536.52Uncharacterized proteins of PilT N-term./Vapc supe... [more]
A0A2D4BNT9_PYTIN1.940e-2537.67rRNA-processing protein, putative n=1 Tax=Pythium ... [more]
G4YZS4_PHYSP2.210e-2539.11Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9711contigP-wetherbeei_contig9711:657..1797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra74779
PFAMsFcf1
Model size728
Max annot lvl4776|Peronosporales
KEGG koko:K14773
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.23e-28
EggNOG OGsCOG1412@1|root,KOG3164@2759|Eukaryota,3Q9U5@4776|Peronosporales
Ec32 ortholog descriptionPIN domain-like
Ec32 orthologEc-16_002850.1
DescriptionFcf1
Cds size726
COG categoryS
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187106.795191-CDS-P-wetherbeei_contig9711:656..10221683187106.795191-CDS-P-wetherbeei_contig9711:656..1022Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9711 657..1022 -
1683187106.8052137-CDS-P-wetherbeei_contig9711:1288..15631683187106.8052137-CDS-P-wetherbeei_contig9711:1288..1563Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9711 1289..1563 -
1683187106.8137088-CDS-P-wetherbeei_contig9711:1712..17971683187106.8137088-CDS-P-wetherbeei_contig9711:1712..1797Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9711 1713..1797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9711.1.1prot_P-wetherbeei_contig9711.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9711 657..1797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9711.1.1

>prot_P-wetherbeei_contig9711.1.1 ID=prot_P-wetherbeei_contig9711.1.1|Name=mRNA_P-wetherbeei_contig9711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=242bp
MRVSRGKQYRKHLRFYRLVYGVAPPYKLNGNFIHACLSCKVDILERVTAL
LQGNKVRLLVPRRVLEELEALGAGFEAALNFARTACRVARDGAETAADAS
AQILSLVGDENEKKYIVASQDPELRSRLRGVAACPLLHLSRTVLLMEAPS
GAAKANLERREQQKAAPAAGEAELIVCVRREAAAGRAERRAAQGTGQRIK
RPASGPNPLSCKKRKPDPKASGGGGGGGGSGGGGGSGGGGSS
back to top

mRNA from alignment at P-wetherbeei_contig9711:657..1797-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9711.1.1 ID=mRNA_P-wetherbeei_contig9711.1.1|Name=mRNA_P-wetherbeei_contig9711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1141bp|location=Sequence derived from alignment at P-wetherbeei_contig9711:657..1797- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGTCTCCCGGGGCAAGCAATATAGAAAACACCTCCGCTTCTACCG CCTCGTCTATGGCGTCGCTCCGCCGTACAAATTGAGTCTTTTCTCGCAAC CTTCGCCACAAGTTTCGCTCTCTTCTCTCCGTAATGATTGGCCAATGTCC TCGGACACCAGTGTCCTCAATACTTACTGTTGCTCTGTTTACGATGACTC CACCCGGTGGGTACCCTCCGCCAGGTCTTGTTAGATGGCAATTTCATCCA CGCATGCTTGTCCTGCAAAGTCGACATTCTTGAGCGAGTGACGGCACTGC TGCAGGGAAACAAGGTTAGGCTACTGGTTCCGCGGCGTGTGCTCGAGGAG CTGGAGGCATTGGGAGCCGGTTTCGAAGCGGCCCTCAACTTTGCGCGAAC CGCGTGCCGTGTTGCCCGCGACGGGGCCGAAACGGCGGCAGATGCCTCGG CGCAGATCCTTTCTCTCGTCGGGGACGAGAACGAAAAAAAATACATCGTG GCCTCGCAGGTGAGGCCTGGTTGAACTTTTAACTCGAAGGACCTTTTTTC TCGTTCCTCTGCGAAGAAGATAACTCGACAGCCTTCGATCAATCTCTTGC CCGCTTCCGCTCTGCGATAAACCGTGAGCAGTCCTCTCTTTGCACGACTA CACTTGCATCGGCGCCGTGATTGCTGCGATACCTCTGCCCTAGGCCATCT CTGCATCGACCAAACGGCTTCCGGAAACACGGACTGAACGCGGGCTCAGC ATTCTGTCGCATTCCATTTGTGCAGGATCCGGAGCTACGAAGCCGGCTGC GCGGCGTGGCCGCGTGCCCGCTGCTGCACCTCAGCCGCACGGTCCTTCTG ATGGAGGCGCCATCGGGGGCGGCCAAAGCCAACCTCGAACGGCGAGAGCA GCAAAAGGCGGCGCCGGCGGCCGGCGAGGCGGAGCTCATCGTCTGCGTCC GGCGGGAGGCTGCCGCCGGCCGCGCGGAGCGGCGGGCGGCACAGGGCACG GGCCAGCGCATCAAGCGGCCGGCATCGGGGCCAAACCCCCTGTCATGCAA GAAGCGCAAGCCTGACCCGAAGGCGAGCGGCGGCGGCGGCGGCGGCGGCG GGAGCGGCGGCGGCGGCGGGAGCGGCGGCGGCGGCAGCTCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9711:657..1797-

>mRNA_P-wetherbeei_contig9711.1.1 ID=mRNA_P-wetherbeei_contig9711.1.1|Name=mRNA_P-wetherbeei_contig9711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=726bp|location=Sequence derived from alignment at P-wetherbeei_contig9711:657..1797- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGTCTCCCGGGGCAAGCAATATAGAAAACACCTCCGCTTCTACCG
CCTCGTCTATGGCGTCGCTCCGCCGTACAAATTGAATGGCAATTTCATCC
ACGCATGCTTGTCCTGCAAAGTCGACATTCTTGAGCGAGTGACGGCACTG
CTGCAGGGAAACAAGGTTAGGCTACTGGTTCCGCGGCGTGTGCTCGAGGA
GCTGGAGGCATTGGGAGCCGGTTTCGAAGCGGCCCTCAACTTTGCGCGAA
CCGCGTGCCGTGTTGCCCGCGACGGGGCCGAAACGGCGGCAGATGCCTCG
GCGCAGATCCTTTCTCTCGTCGGGGACGAGAACGAAAAAAAATACATCGT
GGCCTCGCAGGATCCGGAGCTACGAAGCCGGCTGCGCGGCGTGGCCGCGT
GCCCGCTGCTGCACCTCAGCCGCACGGTCCTTCTGATGGAGGCGCCATCG
GGGGCGGCCAAAGCCAACCTCGAACGGCGAGAGCAGCAAAAGGCGGCGCC
GGCGGCCGGCGAGGCGGAGCTCATCGTCTGCGTCCGGCGGGAGGCTGCCG
CCGGCCGCGCGGAGCGGCGGGCGGCACAGGGCACGGGCCAGCGCATCAAG
CGGCCGGCATCGGGGCCAAACCCCCTGTCATGCAAGAAGCGCAAGCCTGA
CCCGAAGGCGAGCGGCGGCGGCGGCGGCGGCGGCGGGAGCGGCGGCGGCG
GCGGGAGCGGCGGCGGCGGCAGCTCT
back to top