mRNA_P-wetherbeei_contig971.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig971.1.2
Unique NamemRNA_P-wetherbeei_contig971.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig971.1.2 vs. uniprot
Match: D8LF07_ECTSI (SGT1 homologue n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF07_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.430e-51
Identity = 132/337 (39.17%), Postives = 187/337 (55.49%), Query Frame = 1
Query:   31 AYVAEDYPSAITLYGKVIEAEPSSH-LPYLNRCAALLKLRRAAEALEDAEAALRLEPECELALYRKGLACFELERFVPARDAFRSGQQ-RYAAASEHDPRRYPTWLRKCEAEIGLSDTEVSETAD---------------------PAAKPAAVAANRPAPQLKAAAAAAPPSTHLQTRFQYYQSSEKLTVGILVKGVKAEEATVEVEPRRVRLW-SGGKESPTLLFDKLLHDEVVPAECKTRFLASKVEIVLKKKSPFEWPDL--GALPPGPGAAPASAXXXXXXXXXXXXXXXXXXXXATKEKKP----RPYSSHRDWDTIEKEVERELSSEKPG 951
            A++ EDYP+ +  YG+ I        L   NR A  LKL +  EAL+DA AA++L P  E+A YRKGLA F LE F  A +AFR G++        +DPR+Y TW+RKCEAE+   +   +                         P +  +  AA  P  +    A++  P+ HL+ +FQYYQS EK+TV +L KG+K  E  V+VE +R+ +    G  +  LLFDK+L++EV+P +C+TRF+ASK+E+ + KKSP +WP+L   A+P    AA A+A                    A  E+ P    RPYSS +DWD +EKEV++EL +EKPG
Sbjct:   14 AFIDEDYPATLQAYGEAISLGGEGEALARSNRAAVYLKLSKHTEALQDASAAVKLMPT-EMAFYRKGLAAFALEEFETALEAFRQGKKLEEERGDSNDPRKYRTWVRKCEAELEAEEEAHAXXXXXXXXXXXXXXXXXXXXXXDVAPVSGGSVGAAAAPVKRTPVPASSTAPA-HLRIKFQYYQSYEKVTVAVLEKGLKESEVKVDVEAKRLTVRRKAGDNAGALLFDKVLYEEVLPEKCRTRFMASKLEVTMTKKSPADWPELEGAAIPAARPAAAATATDASSTSGE-----------AAVEQPPTKVARPYSSTKDWDVVEKEVQKELEAEKPG 337          
BLAST of mRNA_P-wetherbeei_contig971.1.2 vs. uniprot
Match: A0A835ZF73_9STRA (SGS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF73_9STRA)

HSP 1 Score: 181 bits (459), Expect = 4.340e-47
Identity = 126/341 (36.95%), Postives = 181/341 (53.08%), Query Frame = 1
Query:   13 VAAADAAYVAEDYPSAITLYGKVIEAEPSSHLPYLNRCAALLKLRRAAEALEDAEAALRLEPECELALYRKGLACFELERFVPARDAFRSGQQRYAAASEH--------------DPRRYPTWLRKCEAEIGLSDTEVSETADPAAKPAAVAANRPAPQLKAAAAAAPPSTHLQTRFQYYQSSEKLTVGILVKGVKAEEATVEVEPRRVRLWSGGKESPTLLFDKLLHDEVVPAECKTRFLASKVEIVLKKKSPFEWPDLGA-------LPPGPGAAPASAXXXXXXXXXXXXXXXXXXXXATKEKKPRPYSSHRDWDTIEKEVERELSSEKP-GESERNE 969
            +A  +AA+V +D+  A+ LY + +EA+      Y  R AA LKLRR A+AL+DA+ AL+L P  E ALYR+G+ACF L+++  A +AF +G+   AA  +               D R+Y TW+RKC AE+  +D                             A  PP      ++QYYQ+++K+TVGIL K V+  +A V++   R+R+      S  +LFDK L D+VV AEC+TRFLASK+E  LKK+    WP L         + P P A  A+A                     ++EK P+PY+SHRDWD I++++ +EL +EKP GE   NE
Sbjct:    4 LAQGNAAFVDDDFARAVQLYTQAVEADAGLADAYAARAAAHLKLRRHADALQDADGALKLRPGLEPALYRRGVACFSLDKYAEALEAFTAGK---AAQGDRPAGKLPFVCRVRTDDSRKYSTWIRKCNAELEAADATXXXXXXXXXXXXXXXXXXXXXXXXXPPALVPP------KYQYYQTADKVTVGILEKNVREGDAVVDISEDRLRV---ALTSGRVLFDKQLFDKVVVAECRTRFLASKIECTLKKQDAHNWPQLEGSGKPQKVIKPPPVAEAAAAEAAPAGAE-------------SQEKPPKPYASHRDWDAIDRDISKELEAEKPEGEEALNE 319          
BLAST of mRNA_P-wetherbeei_contig971.1.2 vs. uniprot
Match: A0A6H5K5R7_9PHAE (CS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R7_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 5.090e-40
Identity = 103/257 (40.08%), Postives = 144/257 (56.03%), Query Frame = 1
Query:   31 AYVAEDYPSAITLYGKVIEAEPSSH-LPYLNRCAALLKLRRAAEALEDAEAALRLEPECELALYRKGLACFELERFVPARDAFRSGQQRYAAASEHDPRRYPTWLRKCEAEIGLSDTEV------------------SETADPAAKPAAVAANRPAPQLKAAAAAAPPSTHLQTRFQYYQSSEKLTVGILVKGVKAEEATVEVEPRRVRLW-SGGKESPTLLFDKLLHDEVVPAECKTRFLASKVEIVLKKKSPFEW 741
            A++ EDYP+ +  YG+ I        L   NR A  LKL +  EAL+DA AA++L P  E+A YRKGLA F LE F  A +AFR G++        DPR+Y TW+RKCEAE+   +                     S+ A P +  +  AA  P  +    A++  P+ HL+ +FQYYQS EK+TV +L KG+K  E  V+VEP+R+ +    G  +  LLFDK+L++EV+P +C+TRF+ASK         PF W
Sbjct:   14 AFIDEDYPATLQAYGEAISLGGEGEALARSNRAAVYLKLGKHTEALQDASAAVKLMPT-EMAFYRKGLAAFALEEFETALEAFRQGKKLEERGDSSDPRKYRTWIRKCEAELEAEEXXXXXXXXXXXXXXXXXXXXXSDIA-PVSGGSVGAAATPVKRTPVLASSTAPA-HLRIKFQYYQSYEKVTVAVLEKGLKESEVKVDVEPKRLTVKRKAGDNAGALLFDKVLYEEVLPEKCRTRFMASKA-------GPFAW 260          
BLAST of mRNA_P-wetherbeei_contig971.1.2 vs. uniprot
Match: W7U5K4_9STRA (Suppressor of g2 allele of skp1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5K4_9STRA)

HSP 1 Score: 156 bits (395), Expect = 3.170e-38
Identity = 115/323 (35.60%), Postives = 169/323 (52.32%), Query Frame = 1
Query:   22 ADAAYVAEDYPSAITLYGKVIEAEPSSHLPYLNRCAALLKLRRAAEALEDAEAALRLEPECELALYRKGLACFELERFVPARDAFRSGQQRYAAASEHDPRRYPTWLRKCEAEIGLSD----TEVSETA------DPAAK--PAAVAANRPAPQLKAAAAAAPPSTHLQTRFQYYQSSEKLTVGILVKGVKAEEATVEVEPRRVRLWSGGKESPTLLFDKLLHDEVVPAECKTRFLASKVEIVLKKKSP-FEWPDLGALPPGPGAAPASAXXXXXXXXXXXXXXXXXXXXATKEKKP-RPYSSHRDWDTIEKEVERELSSEKP 948
            A  A++ EDY +A  L+   I   P      ++R A  LKL + ++AL DAEAA  L+ + E+A YR+G+A F LE F  A++AF  G+       E   RRY  WLRK   E+G  D    T V+E        +  AK   A V  ++P+P    ++A A P+ H+  +FQ+YQ++  +TV IL KG++ E+A V V+PR +++  G       LFD+ L + VVP E  ++  A+KVE+ L+K      WP+L AL P   A+  +                          KP RPY+S +DW  +EKE+ +EL SEKP
Sbjct:    4 AQLAFMDEDYATADELFSAYIATHPDDATALVSRAAVHLKLNQPSQALHDAEAAASLKSDLEVAWYRQGVAAFALEDFSRAKEAFMRGRALLGDRPEPQGRRYDVWLRKTTLELGEHDEQGMTVVAEGGIKELRQEQGAKGIEATVPRSQPSPTHPPSSAPAIPAGHV--KFQFYQTTSYVTVTILYKGLREEDANVSVQPRHLKVSVGA--DGDALFDRALFETVVPEESTSKIFATKVEVKLRKAMEGLTWPELCALSPSAAASVHTVSAPTPDSHATALPSLAQGPATAPSSKPLRPYASTKDWGAVEKEISKELESEKP 322          
BLAST of mRNA_P-wetherbeei_contig971.1.2 vs. uniprot
Match: A0A7S2SS77_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS77_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.140e-33
Identity = 118/333 (35.44%), Postives = 167/333 (50.15%), Query Frame = 1
Query:   13 VAAADAAYVAEDYPSAITLYGKVIEAEPSSHLPYLNRCAALLKLRRAAEALEDAEAALRLEPECELALYRKGLACFELERFVPARDAFRSGQQRYAAASEHDPR--RYPTWLRKCEAEIGLSDTEV---SETADPAAKPAAVAANRPAPQLKAAAAAAPPSTHLQTRFQYYQSSEKLTVGILVKGVKAEEATVEVEPRR--VRLWSGGKESPTLLFDKLLHDEVVPAECKTRFLASKVEIVLKKKSPFEWPDL---GA---LPPGPGAAPASAXXXXXXXXXXXXXXXXXXXXATKEKKPRPYSSHRDWDTIEKEVERELSSEKP-GESERNE 969
            +AAA    + +D+  A+  +   +E EP     +  R  AL KL R  EAL+DA  A+ L+  CE+A +RKG ACFELE +  A  AF  GQ    ++ + +PR   Y  W+RKCE EI   + E+   +     A +PAA AA    P       AAPP   +  ++Q+YQ++  + V I+ K +K +E +VE+E R   VR+   G E  +L     L D VVPAE     L++KVEI LKK   F+W DL   GA   +   P ++ ASA                            PY+S RDW+ ++K ++ EL  EKP GE   NE
Sbjct:   24 LAAASDLILDDDFEGAVEQFTLALEIEPGMIRAFTGRSTALQKLGRHTEALQDANKAIALDGSCEVAFFRKGTACFELEEYETALAAFTKGQSLLKSSGKAEPRGRNYDRWIRKCETEIEDDEDELVPENMVGSGAGEPAAAAAADVQPP------AAPPRPSI--KYQHYQTAGHVVVAIMEKKLKKDEVSVEIEDRVCVVRISREGSEPASLTLH--LWDSVVPAESSFVVLSTKVEIKLKKVGDFQWDDLVNSGAARVVTAVPSSSAASAT---------------------------PYASKRDWNQVDKAMQEELEKEKPEGEEALNE 319          
BLAST of mRNA_P-wetherbeei_contig971.1.2 vs. uniprot
Match: F0WJK5_9STRA (Uncharacterized protein AlNc14C123G6730 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJK5_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.240e-32
Identity = 101/311 (32.48%), Postives = 158/311 (50.80%), Query Frame = 1
Query:   25 DAAYVAEDYPSAITLYGKVIEAEPSSHLPYLNRCAALLKLRRAAEALEDAEAALRLEPECELALYRKGLACFELERFVPARDAFRSGQQRYAAASEHDPRRYPTWLRKCEAEIGLSDTEVSETADPAAKPAAVAANRPAP-QLKAAAAAAPPSTHLQTRFQYYQSSEKLTVGILVKGVKAEEATVEVEPRRVRLWSGGKESPTLLFDKLLHDEVVPAECKTRFLASKVEIVLKKKSPFEWPDLGALPPGPGAAPASAXXXXXXXXXXXXXXXXXXXXATKEKK--PRPYSSHRDWDTIEKEVERELSSEKP 948
            +A +V E Y  AI  Y K + +       +  R A  +KL +  +A  DA+ A+ L+    +A  RKG+ACFE+ER+  A+D F  GQQ    AS      + TW+RKC+AE+   D    E AD A +     +N+ A  +L+A    +P     + R ++YQS+  +T+ IL K ++ E+ +VE+  + VR+     +   + FD+ L DE++ +E   + L +KVEI LKKK+ + W  L  +P                              A  E K  P+PYS +RDW+ I+KE+ +EL +EKP
Sbjct:    8 NALFVDEQYNEAIAAYTKSLTSNDKDADTFAKRAAVHIKLEKWEDARSDADHAIALDATLAVAYLRKGIACFEMERYKEAKDTFMCGQQIVTTASNQQHLPFSTWIRKCDAELQDKD----EFADDAMQSENKTSNKEAATKLQADTLVSP-----RIRHEWYQSNSHVTISILQKQLQPEQVSVEIGVKEVRVIIRLFDQTVVAFDQKLCDEIIESESAWKVLGTKVEIKLKKKTNYIWQQLEEVP--------------------RQSSSNRTPDANSETKAAPKPYSGNRDWEQIDKEIRKELENEKP 289          
BLAST of mRNA_P-wetherbeei_contig971.1.2 vs. uniprot
Match: A0A024G272_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G272_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.350e-32
Identity = 100/312 (32.05%), Postives = 153/312 (49.04%), Query Frame = 1
Query:   25 DAAYVAEDYPSAITLYGKVIEAEPSSHLPYLNRCAALLKLRRAAEALEDAEAALRLEPECELALYRKGLACFELERFVPARDAFRSGQQRYAAASEHDPRRYPTWLRKCEAEIG----LSDTEVSETADPAAKPAAVAANRPAPQLKAAAAAAPPSTHLQTRFQYYQSSEKLTVGILVKGVKAEEATVEVEPRRVRLWSGGKESPTLLFDKLLHDEVVPAECKTRFLASKVEIVLKKKSPFEWPDLGALPPGPGAAPASAXXXXXXXXXXXXXXXXXXXXATKEKKPRPYSSHRDWDTIEKEVERELSSEKP 948
            +A +V E +  A+  Y K +E        +  R A  LKL +  EA  DA+ A+ L+    +A  RKG+ACFELER+  A+D F  GQQ  + A +     + TW+RKC+ EI       D          +K AA+++ + A       A AP     + R ++YQS+ ++TV IL K ++ E+ +V+V  + VR+         + FD+ L DEVV +E   + L +KVEI LKKK+ + W  L  +P                                 +  P+PYSS RDW  I+K++++EL +EKP
Sbjct:    8 NALFVDEQFNEALAAYSKSLEENDMDADTFSKRAAVYLKLTKWEEARSDADHAIALDVALSIAYLRKGIACFELERYEEAKDTFLCGQQTLSGAPDEYQLPFLTWIRKCDTEIQDGDVFPDNSAKSETGATSKEAAISSKKDA-------AVAP-----RVRHEWYQSNSQVTVSILQKKLQPEQVSVDVGVKEVRVIIRLANETIVAFDQKLFDEVVESESTWKVLGTKVEIKLKKKNNYIWQQLEEMP-------------------NQLSSHLPDTLCETKAAPQPYSSKRDWGQIDKQIQKELENEKP 288          
BLAST of mRNA_P-wetherbeei_contig971.1.2 vs. uniprot
Match: F0Y0A7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0A7_AURAN)

HSP 1 Score: 136 bits (343), Expect = 1.790e-31
Identity = 107/324 (33.02%), Postives = 151/324 (46.60%), Query Frame = 1
Query:   13 VAAADAAYVAEDYPSAITLYGKVIEAEPSSHLPYLNRCAALLKLRRAAEALEDAEAALRLEPECELALYRKGLACFELERFVPARDAFRSGQQRYAA-ASEHDPRRYPTWLRKCEAEIGLSDTEVSETADPAAKPAAVAANRPAPQLKAAAAAAPPSTHLQTRFQYYQSSEKLTVGILVKGVKAEEATVEVEPRRV--RLWSGGKESPTLLFDKLLHDEVVPAECKTRFLASKVEIVLKKKSPFEWPDL--GAL-------PPGPGAAPASAXXXXXXXXXXXXXXXXXXXXATKEKKPRPYSSHRDWDTIEKEVERELSSEKP 948
            +AAA+     E Y +A+  YG  I+ +      Y  R A  L+L +   AL+DA AAL  +  CE ALYRKGLACF L+ F  A D+F+ G +   A A+    R+Y  W RKCEAEI                            + +     P       ++QYYQ++  LT+ +L K VK E+A + +    +  +L   G +S   +    L+D VVPAECK ++ ++K+++ LKKK  F W +L  G L       PP    APAS                     AT      PY+  RDW  +EKE+E EL  +KP
Sbjct:    3 LAAANQLLCDELYDAALVAYGSAIDGDDKCAAAYAGRAAIYLRLEKYTNALQDANAALAEDGACEPALYRKGLACFHLDEFETALDSFQKGFKLLGADAAAAATRKYAMWARKCEAEIXXXXXXXXXXXXX--------------DVPSGVKVVP----CDVKYQYYQTNSHLTITLLAKNVKEEDAEIVITETTLICKLKRDGGKSEMTVISGELYDPVVPAECKVKYFSTKIDVKLKKKDAFNWNELLKGDLIGEPKKKPPTFKPAPASTTST-----------------AT------PYAGKRDWHQLEKEMEAELEKDKP 285          
BLAST of mRNA_P-wetherbeei_contig971.1.2 vs. uniprot
Match: A0A7S2BLI2_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLI2_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.120e-31
Identity = 81/240 (33.75%), Postives = 129/240 (53.75%), Query Frame = 1
Query:   37 VAEDYPSAITLYGKVIEAEPSSHLPYLNRCAALLKLRRAAEALEDAEAALRLEPECELALYRKGLACFELERFVPARDAFRSGQQRYAAASEHDPRRYPTWLRKCEAEIGLSDTEVSETADPAAKPAAVAANRPAPQLKAAAAAAPPSTHLQTRFQYYQSSEKLTVGILVKGVKAEEATVEVEPRRVRLWSGGKESPTLLFDKLLHDEVVPAECKTRFLASKVEIVLKKKSPFEWPDLGA 756
            V +D+  A+  +   +E + +S      R A  +KL +   AL+DA AA++L+ +CE+A +RKG+ACF L+ F  A DAFR G+         D R Y  W+RKCE+EI   D  +    +  A PAAVA+    P + A      P    + ++Q+YQS+  LTV I+ K +K EE  V++  + +++         +  D  L++ + P++   + + +KVEI LKK    +WPDL A
Sbjct:   21 VDDDFEGALESFSAALELDANSVKALTGRAATFIKLEKYTSALQDANAAVKLDEKCEVAYFRKGMACFALDEFETALDAFRKGKDLQPPGK--DSRSYGRWIRKCESEIESDDDVIDMETEDGASPAAVAS----PPIPAPMQPVQPPEEKKLKYQHYQSASLLTVSIMEKKLKPEEVAVDISEKHLKVTVARPNVEPICMDVDLYEFIDPSQSSFKIMGTKVEIKLKKVEGIQWPDLKA 254          
BLAST of mRNA_P-wetherbeei_contig971.1.2 vs. uniprot
Match: A0A7S1FSN7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSN7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.970e-30
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 2
Query: 1283 TEGEEALNDLFKQIYRGADEDTRRAMVKSFQTSGGTVLSTNWGEVGKADYEKERTAPHGMEWRNWEGEKVAQADDSN 1513
            +EGEEALN LF+QIY GA+EDTRRAMVKSFQTSGGTVLSTNW EVGK DYE+ER AP GMEWR WEG+K+ Q  D +
Sbjct:  131 SEGEEALNRLFRQIYAGANEDTRRAMVKSFQTSGGTVLSTNWDEVGKTDYERERQAPKGMEWRTWEGQKLPQKKDED 207          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig971.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF07_ECTSI1.430e-5139.17SGT1 homologue n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A835ZF73_9STRA4.340e-4736.95SGS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5K5R7_9PHAE5.090e-4040.08CS domain-containing protein n=1 Tax=Ectocarpus sp... [more]
W7U5K4_9STRA3.170e-3835.60Suppressor of g2 allele of skp1 n=2 Tax=Monodopsid... [more]
A0A7S2SS77_9STRA2.140e-3335.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0WJK5_9STRA1.240e-3232.48Uncharacterized protein AlNc14C123G6730 n=1 Tax=Al... [more]
A0A024G272_9STRA2.350e-3232.05Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
F0Y0A7_AURAN1.790e-3133.02Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2BLI2_9STRA2.120e-3133.75Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S1FSN7_9STRA2.970e-3076.62Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig971contigP-wetherbeei_contig971:519..2945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LF07
PFAMsCS,KH_2,MMR_HSR1,SGS,TPR_11,TPR_2,TPR_8
Model size2132
Max annot lvl2759|Eukaryota
KEGG koko:K03595,ko:K09553,ko:K12795
KEGG Pathwayko04621,ko04626,ko05020,map04621,map04626,map05020
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.16e-55
EggNOG OGsCOG0457@1|root,COG5091@1|root,KOG0548@2759|Eukaryota,KOG1309@2759|Eukaryota
Ec32 ortholog descriptionSGT1 homologue
Ec32 orthologEc-21_006250.1
Descriptionpositive regulation of catalytic activity in other organism involved in symbiotic interaction
Cds size1056
COG categoryI
BRITEko00000,ko00001,ko03009,ko03029,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187106.580939-UTR-P-wetherbeei_contig971:518..15941683187106.580939-UTR-P-wetherbeei_contig971:518..1594Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig971 519..1594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187106.5972745-CDS-P-wetherbeei_contig971:1594..19481683187106.5972745-CDS-P-wetherbeei_contig971:1594..1948Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig971 1595..1948 -
1683187106.6073282-CDS-P-wetherbeei_contig971:2243..29451683187106.6073282-CDS-P-wetherbeei_contig971:2243..2945Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig971 2244..2945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig971.1.2prot_P-wetherbeei_contig971.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig971 1595..2945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig971.1.2

>prot_P-wetherbeei_contig971.1.2 ID=prot_P-wetherbeei_contig971.1.2|Name=mRNA_P-wetherbeei_contig971.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=352bp
MAATVAAADAAYVAEDYPSAITLYGKVIEAEPSSHLPYLNRCAALLKLRR
AAEALEDAEAALRLEPECELALYRKGLACFELERFVPARDAFRSGQQRYA
AASEHDPRRYPTWLRKCEAEIGLSDTEVSETADPAAKPAAVAANRPAPQL
KAAAAAAPPSTHLQTRFQYYQSSEKLTVGILVKGVKAEEATVEVEPRRVR
LWSGGKESPTLLFDKLLHDEVVPAECKTRFLASKVEIVLKKKSPFEWPDL
GALPPGPGAAPASAPARAPSSSPAAAASSTDGAAATKEKKPRPYSSHRDW
DTIEKEVERELSSEKPGESERNENDRGGSGGAEWLPCDCRWCFRAMLSAA
Q*
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mRNA from alignment at P-wetherbeei_contig971:519..2945-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig971.1.2 ID=mRNA_P-wetherbeei_contig971.1.2|Name=mRNA_P-wetherbeei_contig971.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2427bp|location=Sequence derived from alignment at P-wetherbeei_contig971:519..2945- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCAACTGTGGCGGCGGCCGACGCCGCTTACGTGGCCGAGGATTA CCCTTCGGCGATCACGCTCTACGGAAAGGTGATTGAGGCAGAACCGTCCT CCCACCTGCCTTACTTGAATCGTTGCGCGGCGTTGCTTAAGCTCAGAAGA GCGGCGGAGGCCCTCGAAGACGCAGAGGCCGCATTGCGTCTCGAGCCCGA ATGCGAATTGGCCCTTTACCGAAAAGGGCTCGCGTGCTTTGAGCTGGAGC GCTTTGTTCCAGCGCGAGACGCCTTCCGGAGCGGCCAGCAGCGATACGCC GCCGCGTCCGAGCACGACCCTCGTCGCTATCCCACCTGGCTCCGAAAGTG CGAGGCGGAGATCGGCCTTTCCGACACTGAAGTCTCAGAAACGGCCGATC CTGCGGCCAAGCCTGCTGCCGTGGCAGCGAACCGCCCAGCTCCGCAGCTC AAAGCCGCCGCCGCCGCTGCGCCGCCGTCGACGCATCTCCAGACCCGCTT TCAGTACTACCAATCGTCGGAAAAGCTGACGGTCGGCATTCTCGTGAAAG GTGTCAAGGCCGAAGAGGCGACTGTCGAGGTCGAGCCGCGGCGGGTTCGG CTGTGGTCTGGCGGGAAGGAGTCGCCGACGCTGCTGTTCGACAAGCTGCT GCACGACGAGGTTGTGCCGGCGGAGTGCAAGACCCGCTTCCTGGCCAGCA AGGTGAGAGGCAAGACCCGTTTGTGCAGCGTAGCTCTTTACGTAAGAGGA GCGGGATAAACGCCCCATGGGCGTCACTGGATGATCTGCTGACAGATTCT GACTCCGAGGTTTTTCCCTAAAGGATCCCGAAGCTGCACAGGATCCTCCG TGCACACTGATGGTCTCGAGGACCCCTTTTCATGGGCGCCTTTTTTGTCG TTAGAAAACAGTTGAGTTTCACTGAAACGAAGTTTTCTGCGCACCACCCT CTTCTTCCGAAAACGGTGTACCTCCATGTGCCTGCCTACGTCAAAAGGTG GAGATCGTCCTAAAAAAGAAGAGCCCCTTCGAATGGCCCGACCTCGGCGC CCTCCCGCCGGGCCCCGGCGCCGCCCCGGCCTCGGCGCCGGCGCGCGCCC CGAGCAGCAGCCCGGCGGCTGCTGCTTCCTCTACAGATGGGGCGGCGGCA ACAAAGGAGAAGAAGCCGCGGCCGTATTCGAGCCACCGGGACTGGGACAC CATCGAGAAGGAGGTGGAGCGGGAGCTGTCCTCGGAGAAGCCCGGTGAGT CGGAAAGGAATGAGAATGACCGAGGTGGAAGTGGTGGAGCGGAATGGCTG CCTTGTGACTGTCGCTGGTGTTTTCGTGCGATGTTATCTGCAGCGCAATG ATGGTGGTTTAGTTGCTCGTGTCGCACAGGCCGACTTTTAGCATCCTTAC ACTGCCACACTGCATGTTCTGCTGTTGCTGCCACGCCGTGTACGGCTGAC CGCAATCAACCACCGACGCTTCCTGCGGCGCCGCACCTTCCACGGCCGCC TCCACCGCTGCTTGCTGCGACCGCCCCATCTCGGGTGAAATTTTCTGCCA CCGCCCGCCGCTACGAAACGCAACACAACAGAGGGGGAGGAGGCGCTGAA CGACCTCTTCAAGCAGATCTACCGCGGCGCCGACGAGGACACGCGGCGGG CGATGGTAAAGTCCTTCCAGACTTCTGGAGGCACTGTCCTGTCGACCAAC TGGGGCGAGGTCGGCAAGGCGGACTACGAGAAGGAGCGGACGGCGCCGCA CGGCATGGAGTGGCGGAACTGGGAGGGGGAGAAGGTGGCGCAGGCGGACG ACAGCAACAAGTAGTGCTAGCCCGGTGACGGCAGCAGGTGGCGACGGCGA GCGGTCGCGACCGATGGCGAGTAGCGGACGGCGACTGGAGGCGAGCGGCG GCGAGCGGTGCTTCTCAGGCGGCCGCGTGCGACGGAGAGCGCTCAGAGCG TGGACTTTGCACTCTGACGAGACTTGTCGGCTTGCACTCTAGCAGTCTCT GTGGGGCTGTGCGCCGCCGCGCTTCGGAAAGGGGGCAGATGACCCGGCGA AGGCGGTGATACGGCCCGCCGCTCGGCGGCGTCGCCTCTGTGCTCGCTTC CGCGTCAACGGATTTGTTCACCGCTGCTGAGAGCGGCACAGTGGTCGCCG CCGCTTCAGAACGGCGTGCGTTTCGCCGGGATGGCAGCAGGCCGCTGCCA TCGAGATAAGAAGACCGCTGCCGTGGCAGAGGCGGCGGCTGGCAACTTGT GGAGAGAAAAGTTACCACAGAAACTTTGAAGAGACGGAGGCGGCGGCGGG CGGACAAATGTCGGGAGCCAGAAACAGTGCACAGCGGCACGATCCAGGAG GAACTGCAGCACGAAATTTGGGGCTTGCAGCTTACGCCGGGCCGGCTAGC TGTCATAGCGCGCACAAATTGACCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig971:519..2945-

>mRNA_P-wetherbeei_contig971.1.2 ID=mRNA_P-wetherbeei_contig971.1.2|Name=mRNA_P-wetherbeei_contig971.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1056bp|location=Sequence derived from alignment at P-wetherbeei_contig971:519..2945- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCAACTGTGGCGGCGGCCGACGCCGCTTACGTGGCCGAGGATTA
CCCTTCGGCGATCACGCTCTACGGAAAGGTGATTGAGGCAGAACCGTCCT
CCCACCTGCCTTACTTGAATCGTTGCGCGGCGTTGCTTAAGCTCAGAAGA
GCGGCGGAGGCCCTCGAAGACGCAGAGGCCGCATTGCGTCTCGAGCCCGA
ATGCGAATTGGCCCTTTACCGAAAAGGGCTCGCGTGCTTTGAGCTGGAGC
GCTTTGTTCCAGCGCGAGACGCCTTCCGGAGCGGCCAGCAGCGATACGCC
GCCGCGTCCGAGCACGACCCTCGTCGCTATCCCACCTGGCTCCGAAAGTG
CGAGGCGGAGATCGGCCTTTCCGACACTGAAGTCTCAGAAACGGCCGATC
CTGCGGCCAAGCCTGCTGCCGTGGCAGCGAACCGCCCAGCTCCGCAGCTC
AAAGCCGCCGCCGCCGCTGCGCCGCCGTCGACGCATCTCCAGACCCGCTT
TCAGTACTACCAATCGTCGGAAAAGCTGACGGTCGGCATTCTCGTGAAAG
GTGTCAAGGCCGAAGAGGCGACTGTCGAGGTCGAGCCGCGGCGGGTTCGG
CTGTGGTCTGGCGGGAAGGAGTCGCCGACGCTGCTGTTCGACAAGCTGCT
GCACGACGAGGTTGTGCCGGCGGAGTGCAAGACCCGCTTCCTGGCCAGCA
AGGTGGAGATCGTCCTAAAAAAGAAGAGCCCCTTCGAATGGCCCGACCTC
GGCGCCCTCCCGCCGGGCCCCGGCGCCGCCCCGGCCTCGGCGCCGGCGCG
CGCCCCGAGCAGCAGCCCGGCGGCTGCTGCTTCCTCTACAGATGGGGCGG
CGGCAACAAAGGAGAAGAAGCCGCGGCCGTATTCGAGCCACCGGGACTGG
GACACCATCGAGAAGGAGGTGGAGCGGGAGCTGTCCTCGGAGAAGCCCGG
TGAGTCGGAAAGGAATGAGAATGACCGAGGTGGAAGTGGTGGAGCGGAAT
GGCTGCCTTGTGACTGTCGCTGGTGTTTTCGTGCGATGTTATCTGCAGCG
CAATGA
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