mRNA_P-wetherbeei_contig970.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig970.1.1
Unique NamemRNA_P-wetherbeei_contig970.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig970.1.1 vs. uniprot
Match: D7FK20_ECTSI (Glucose-6-phosphate/phosphate translocator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK20_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 7.740e-32
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 ALCHMGAHLFAVLSLGAGAVSFTHIVKAAEPLFTALFSAAFLKQYFHPLVYATLLPVVAGVSLASMKELSFSWLALGTAMGSNVASAMR 267
            A CHM +H+ AV+ LGAGAVSF HIVKAAEPLFTALFSA FL Q F PLVY TL+PVVAGV+LAS+KEL F W ALG AMGSN+A++ R
Sbjct:  156 ATCHMLSHVCAVIGLGAGAVSFVHIVKAAEPLFTALFSAVFLGQIFSPLVYLTLVPVVAGVALASLKELDFKWAALGGAMGSNLAASTR 244
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BLAST of mRNA_P-wetherbeei_contig970.1.1 vs. uniprot
Match: A0A6H5KC08_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC08_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.070e-31
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 ALCHMGAHLFAVLSLGAGAVSFTHIVKAAEPLFTALFSAAFLKQYFHPLVYATLLPVVAGVSLASMKELSFSWLALGTAMGSNVASAMR 267
            A CHM +H+ AV+ LGAGAVSF HIVKAAEPLFTALFSA FL Q F PLVY TL+PVVAGV+LAS+KEL F W ALG AMGSN+A++ R
Sbjct:  156 AACHMLSHVCAVIGLGAGAVSFVHIVKAAEPLFTALFSAIFLGQIFSPLVYLTLVPVVAGVALASLKELDFKWAALGGAMGSNLAASTR 244
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BLAST of mRNA_P-wetherbeei_contig970.1.1 vs. uniprot
Match: A0A836CHH7_9STRA (Plastidic triose-phosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.670e-30
Identity = 64/88 (72.73%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    4 LCHMGAHLFAVLSLGAGAVSFTHIVKAAEPLFTALFSAAFLKQYFHPLVYATLLPVVAGVSLASMKELSFSWLALGTAMGSNVASAMR 267
            LCH  +HL AV+ LGAG+VSFTHIVKAAEP FTALFSA FLKQYF   VY +L+PVVAGV+LAS+KEL+FSW AL  AMGSNVA++ R
Sbjct:  155 LCHAISHLSAVIGLGAGSVSFTHIVKAAEPFFTALFSAIFLKQYFPVPVYLSLVPVVAGVALASLKELNFSWTALCGAMGSNVAASSR 242
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BLAST of mRNA_P-wetherbeei_contig970.1.1 vs. uniprot
Match: D8LC95_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC95_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.370e-29
Identity = 65/89 (73.03%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 ALCHMGAHLFAVLSLGAGAVSFTHIVKAAEPLFTALFSAAFLKQYFHPLVYATLLPVVAGVSLASMKELSFSWLALGTAMGSNVASAMR 267
            A  H  AH+ AVLSLGAGAVSFTHIVKAAEP+FTA FSAA L Q F   VY +LLP++AGVSLAS+KELSFSW+A G AMGSN ASA+R
Sbjct:  176 AALHTVAHVTAVLSLGAGAVSFTHIVKAAEPVFTAGFSAALLGQTFAAPVYLSLLPIIAGVSLASLKELSFSWVAFGNAMGSNTASALR 264
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BLAST of mRNA_P-wetherbeei_contig970.1.1 vs. uniprot
Match: A0A6U3YGD8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3YGD8_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.950e-29
Identity = 62/89 (69.66%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 ALCHMGAHLFAVLSLGAGAVSFTHIVKAAEPLFTALFSAAFLKQYFHPLVYATLLPVVAGVSLASMKELSFSWLALGTAMGSNVASAMR 267
            A+CH+G H+ AVLSLGAGAVSFTHIVKA+EP+ +AL SA FLK++    VY +LLPV+ GV LAS+KELSFSWLA  TAM SNVASA R
Sbjct:  160 AICHLGTHVGAVLSLGAGAVSFTHIVKASEPVVSALLSAVFLKEFLPIPVYLSLLPVIGGVGLASLKELSFSWLAFSTAMLSNVASASR 248
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BLAST of mRNA_P-wetherbeei_contig970.1.1 vs. uniprot
Match: A0A7R9YBK2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBK2_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.040e-28
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:   10 HMGAHLFAVLSLGAGAVSFTHIVKAAEPLFTALFSAAFLKQYFHPLVYATLLPVVAGVSLASMKELSFSWLALGTAMGSNVASAMR 267
            H GAHL AVLSLGAGAVSFTHIVKAAEP F+ALF+A  + Q F   VY TL+PV+AGV++ASMKEL+FSW++ G AMGSN  SA+R
Sbjct:  155 HTGAHLTAVLSLGAGAVSFTHIVKAAEPAFSALFAAVLMGQVFAAPVYLTLIPVIAGVAVASMKELAFSWVSFGNAMGSNTFSALR 240
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BLAST of mRNA_P-wetherbeei_contig970.1.1 vs. uniprot
Match: A0A6U4KWF3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KWF3_9STRA)

HSP 1 Score: 113 bits (282), Expect = 6.290e-28
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:   10 HMGAHLFAVLSLGAGAVSFTHIVKAAEPLFTALFSAAFLKQYFHPLVYATLLPVVAGVSLASMKELSFSWLALGTAMGSNVASAMR 267
            H  AH  AVLSLGAGAVSFTHIVKAAEP F+ALF+A FL Q F   VYA L+PV+ GV++ASMKELSFSW++ G AMGSN  SA+R
Sbjct:  162 HTAAHATAVLSLGAGAVSFTHIVKAAEPAFSALFAALFLGQVFAAPVYAALVPVIGGVAVASMKELSFSWMSFGNAMGSNTFSALR 247
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BLAST of mRNA_P-wetherbeei_contig970.1.1 vs. uniprot
Match: A0A4D9DFS8_9STRA (TPT domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DFS8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 7.130e-28
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    1 ALCHMGAHLFAVLSLGAGAVSFTHIVKAAEPLFTALFSAAFLKQYFHPLVYATLLPVVAGVSLASMKELSFSWLALGTAMGSNVASAMR 267
            A  H  AH+ AV+SLGAGAVSFTHI+KAAEP FT+LFSA FLKQYF P+VYA+L+PV+ GV++AS+ E  FSWLA  +AM +N ASA R
Sbjct:  174 AAMHAMAHITAVISLGAGAVSFTHIIKAAEPAFTSLFSALFLKQYFSPVVYASLIPVMGGVAIASLTERKFSWLAFNSAMLANTASAGR 262
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BLAST of mRNA_P-wetherbeei_contig970.1.1 vs. uniprot
Match: F0YEM8_AURAN (TPT domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEM8_AURAN)

HSP 1 Score: 110 bits (274), Expect = 3.770e-27
Identity = 55/89 (61.80%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:    1 ALCHMGAHLFAVLSLGAGAVSFTHIVKAAEPLFTALFSAAFLKQYFHPLVYATLLPVVAGVSLASMKELSFSWLALGTAMGSNVASAMR 267
            A+ H+G H+ AV+SLGAGAVSFTHI+KA+EP+ +A  SA  LK Y+ P+ Y TLLP+V GV LAS+KELSF+WL    AM SNV+SA+R
Sbjct:  107 AMGHLGTHIGAVISLGAGAVSFTHIIKASEPVVSAALSAVMLKAYYSPITYLTLLPIVGGVGLASLKELSFTWLGFAAAMLSNVSSALR 195
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BLAST of mRNA_P-wetherbeei_contig970.1.1 vs. uniprot
Match: A0A7S2SP14_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP14_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.940e-26
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 ALCHMGAHLFAVLSLGAGAVSFTHIVKAAEPLFTALFSAAFLKQYFHPLVYATLLPVVAGVSLASMKELSFSWLALGTAMGSNVASAMR 267
            ALCH+G H+ AVLSLGAGAVSFTHIVKA+EP+ +A  +A FLKQ     VY +L+P++ GV+LAS+ ELSF+WLA G AM SNVASA R
Sbjct:  150 ALCHLGTHVGAVLSLGAGAVSFTHIVKASEPVVSAGLTAIFLKQIMPLPVYLSLVPIIGGVALASVTELSFTWLAFGAAMMSNVASASR 238
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig970.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK20_ECTSI7.740e-3273.03Glucose-6-phosphate/phosphate translocator n=1 Tax... [more]
A0A6H5KC08_9PHAE1.070e-3173.03TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CHH7_9STRA2.670e-3072.73Plastidic triose-phosphate/phosphate translocator ... [more]
D8LC95_ECTSI1.370e-2973.03TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6U3YGD8_9STRA2.950e-2969.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9YBK2_9STRA1.040e-2869.77Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U4KWF3_9STRA6.290e-2869.77Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9DFS8_9STRA7.130e-2866.29TPT domain-containing protein n=2 Tax=Monodopsidac... [more]
F0YEM8_AURAN3.770e-2761.80TPT domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S2SP14_9STRA3.940e-2665.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig970contigP-wetherbeei_contig970:746..1012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FK20
Preferred nameSLC35E3
PFAMsTPT
Model size267
Max annot lvl2759|Eukaryota
KEGG koko:K06643,ko:K15285
KEGG Pathwayko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.25e-30
EggNOG OGsKOG1441@1|root,KOG1441@2759|Eukaryota
EC2.3.2.27
Descriptioncarbohydrate transport
Cds size255
COG categoryZ
BRITEko00000,ko00001,ko01000,ko02000,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187106.087083-CDS-P-wetherbeei_contig970:745..10001683187106.087083-CDS-P-wetherbeei_contig970:745..1000Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig970 746..1000 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187106.1002207-UTR-P-wetherbeei_contig970:1000..10121683187106.1002207-UTR-P-wetherbeei_contig970:1000..1012Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig970 1001..1012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig970.1.1prot_P-wetherbeei_contig970.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig970 746..1000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig970.1.1

>prot_P-wetherbeei_contig970.1.1 ID=prot_P-wetherbeei_contig970.1.1|Name=mRNA_P-wetherbeei_contig970.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
MGAHLFAVLSLGAGAVSFTHIVKAAEPLFTALFSAAFLKQYFHPLVYATL
LPVVAGVSLASMKELSFSWLALGTAMGSNVASAMR
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mRNA from alignment at P-wetherbeei_contig970:746..1012-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig970.1.1 ID=mRNA_P-wetherbeei_contig970.1.1|Name=mRNA_P-wetherbeei_contig970.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig970:746..1012- (Phaeothamnion wetherbeei SAG_119_79)
GCCCTCTGCCACATGGGCGCACACCTCTTCGCCGTGCTCTCCCTCGGCGC
CGGCGCCGTCTCCTTCACGCACATCGTCAAGGCGGCCGAGCCGCTCTTCA
CAGCTCTCTTCTCCGCCGCCTTCCTCAAGCAGTACTTCCACCCGCTCGTC
TATGCGACGCTGCTGCCCGTCGTCGCCGGCGTGTCGCTGGCGTCGATGAA
GGAGCTGTCGTTCTCGTGGCTTGCGCTCGGCACGGCGATGGGGTCGAACG
TGGCGTCGGCGATGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig970:746..1012-

>mRNA_P-wetherbeei_contig970.1.1 ID=mRNA_P-wetherbeei_contig970.1.1|Name=mRNA_P-wetherbeei_contig970.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig970:746..1012- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGCACACCTCTTCGCCGTGCTCTCCCTCGGCGCCGGCGCCGTCTC
CTTCACGCACATCGTCAAGGCGGCCGAGCCGCTCTTCACAGCTCTCTTCT
CCGCCGCCTTCCTCAAGCAGTACTTCCACCCGCTCGTCTATGCGACGCTG
CTGCCCGTCGTCGCCGGCGTGTCGCTGGCGTCGATGAAGGAGCTGTCGTT
CTCGTGGCTTGCGCTCGGCACGGCGATGGGGTCGAACGTGGCGTCGGCGA
TGCGC
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