mRNA_P-wetherbeei_contig9694.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9694.2.1
Unique NamemRNA_P-wetherbeei_contig9694.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9694.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9694contigP-wetherbeei_contig9694:1932..2449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size484
Hectar predicted targeting categorysignal anchor
Exons2
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187105.8302045-UTR-P-wetherbeei_contig9694:1931..20521683187105.8302045-UTR-P-wetherbeei_contig9694:1931..2052Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9694 1932..2052 -
1683187105.8631535-UTR-P-wetherbeei_contig9694:2347..24491683187105.8631535-UTR-P-wetherbeei_contig9694:2347..2449Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9694 2348..2449 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187105.8413835-CDS-P-wetherbeei_contig9694:2052..21511683187105.8413835-CDS-P-wetherbeei_contig9694:2052..2151Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9694 2053..2151 -
1683187105.852381-CDS-P-wetherbeei_contig9694:2185..23471683187105.852381-CDS-P-wetherbeei_contig9694:2185..2347Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9694 2186..2347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9694.2.1prot_P-wetherbeei_contig9694.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9694 2053..2347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9694.2.1

>prot_P-wetherbeei_contig9694.2.1 ID=prot_P-wetherbeei_contig9694.2.1|Name=mRNA_P-wetherbeei_contig9694.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MRVGNCRCLGHTDPTHRPLFSSQHRVTSKEVSASFRAGFAMCVWAYVVLL
LWDELCWKRKLRQGDGGKVRCWMRKGLYAKLNNAVA*
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mRNA from alignment at P-wetherbeei_contig9694:1932..2449-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9694.2.1 ID=mRNA_P-wetherbeei_contig9694.2.1|Name=mRNA_P-wetherbeei_contig9694.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=518bp|location=Sequence derived from alignment at P-wetherbeei_contig9694:1932..2449- (Phaeothamnion wetherbeei SAG_119_79)
GAGTTTCAGAAACGGATACGTACTTCGATTTTTGGTGGACGACGAAAATT
AGAAGGTTTCCGACCCGAGGACTCGCAGCCAGTCACTTCTCCCGGTGACT
GCATGCGAGTTGGTAATTGCCGCTGCCTCGGACACACCGACCCGACGCAC
CGACCGCTCTTTTCTTCCCAGCACAGGGTGACGTCAAAGGAGGTTTCAGC
CAGCTTTCGCGCAGGTTTCGCAATGTGTGTCTGGGCGTATGTTGTATTAC
TGTTATGGGATGAGGTTGAAAAAGGATTGGACACCACTCAGCGCAAAGCT
TTGTTGGAAAAGAAAGCTTAGACAAGGCGATGGCGGGAAGGTTAGATGTT
GGATGCGGAAGGGGCTCTACGCGAAGCTAAACAACGCCGTTGCATGACAA
GTAAAAAGGGTATTGAGGCGCGCGATGCGACGGCGGCGGGATCTGGCAGT
AGCGGCAGCTGAGGAGGAAGCGCTTGACCAGCACGTTTTGGGAAAGGACG
TTTTTCAGGAGCCTGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9694:1932..2449-

>mRNA_P-wetherbeei_contig9694.2.1 ID=mRNA_P-wetherbeei_contig9694.2.1|Name=mRNA_P-wetherbeei_contig9694.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig9694:1932..2449- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAGTTGGTAATTGCCGCTGCCTCGGACACACCGACCCGACGCACCG
ACCGCTCTTTTCTTCCCAGCACAGGGTGACGTCAAAGGAGGTTTCAGCCA
GCTTTCGCGCAGGTTTCGCAATGTGTGTCTGGGCGTATGTTGTATTACTG
TTATGGGATGAGCTTTGTTGGAAAAGAAAGCTTAGACAAGGCGATGGCGG
GAAGGTTAGATGTTGGATGCGGAAGGGGCTCTACGCGAAGCTAAACAACG
CCGTTGCATGA
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