mRNA_P-wetherbeei_contig966.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig966.1.1
Unique NamemRNA_P-wetherbeei_contig966.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig966.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig966contigP-wetherbeei_contig966:14..2729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2139
Hectar predicted targeting categoryother localisation
Exons4
Cds size1311
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig966.1.1prot_P-wetherbeei_contig966.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig966 999..2644 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187104.416922-UTR-P-wetherbeei_contig966:13..6371683187104.416922-UTR-P-wetherbeei_contig966:13..637Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig966 14..637 +
1683187104.427888-UTR-P-wetherbeei_contig966:879..9981683187104.427888-UTR-P-wetherbeei_contig966:879..998Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig966 880..998 +
1683187104.470036-UTR-P-wetherbeei_contig966:2644..27291683187104.470036-UTR-P-wetherbeei_contig966:2644..2729Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig966 2645..2729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187104.4386272-CDS-P-wetherbeei_contig966:998..10741683187104.4386272-CDS-P-wetherbeei_contig966:998..1074Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig966 999..1074 +
1683187104.4490268-CDS-P-wetherbeei_contig966:1229..16671683187104.4490268-CDS-P-wetherbeei_contig966:1229..1667Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig966 1230..1667 +
1683187104.459572-CDS-P-wetherbeei_contig966:1847..26441683187104.459572-CDS-P-wetherbeei_contig966:1847..2644Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig966 1848..2644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig966.1.1

>prot_P-wetherbeei_contig966.1.1 ID=prot_P-wetherbeei_contig966.1.1|Name=mRNA_P-wetherbeei_contig966.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=437bp
MTNELLSFQKPADANILHVTRLSNTATEDGVAALFQRYGALCRVKVKDSK
SYGRFAFVEFFSRHSASLARKALANKMLDSVWWDCVGREVRVASRKGKGK
SVPRGSGAGTGSGDGDGSGGNGTGSGSSGSNDDGTPGSGEAARAPPSTCA
CDELLAPHQCTAMANHFLGFDGWRCRVIQLPRLMRAPAVDYGGCFDDCAA
DGDVNIQGPGAPRRACVSSCFVNGESGRGGGGGLRHDGGGGGGFGEWELP
CTPGPEVRRRKAAAAPAADEEDPELRSAARDALELAPAFSEAAWGQKERG
APLSFSECVACAALEVELKDGRTVTGCGVARLPLGAAASAAAAAARGAAG
GNAARASAGAVDAAAATAGATDPGAIALSKKLALGAARQAAFQRLRLVVL
DGRCRHVVIVPWEGPRCGPVVMSGFVPGGKGDGRAV*
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mRNA from alignment at P-wetherbeei_contig966:14..2729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig966.1.1 ID=mRNA_P-wetherbeei_contig966.1.1|Name=mRNA_P-wetherbeei_contig966.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2716bp|location=Sequence derived from alignment at P-wetherbeei_contig966:14..2729+ (Phaeothamnion wetherbeei SAG_119_79)
AACGACAGCAAGCCGTCGAACTCGACGGTGCCGCTCGTGCGGCACCGCAG
CTTTATGGGCGACGTCGGCCGTGGCGGCGCCAACGTTAGAAAAGCTTTGC
GCGTGCCGTTGGCCGCGGCGGCGTCAGCAGCAGGGGGTGCTTCGGCGATC
CCGTCAGCCGCAGCGGCGCCAGAAGCACTAGAAAGCTTCTTGCGTGAACG
CCGCCGACTGGGGTGGCGCCAGCATTAGGAGAGATTTGCGGGCGCAATTC
GCTACGGCGGCGGCGTCAGCAGCGCGAGATTTTCGTGCAACGCCGCCGTC
GGCCGCAGCGGCACCAGCCGCGAAAGAGCTTTGGGCCATCATCAGCGGTG
AGATACTCTTGTGGGTGCCAGAGCATTGCGGCGCTGCTGGGTGTGGCAGT
GACAGCCGGTTGGCGTTGCAGCGGCGGTGAAAATGCGGGCGGCGTCACGC
AATCCATAAATAATGAATTGACTCGTGAAGTGTGCCTCTTTGCTTTTTTC
CCCCTGTCTTCACGAGTTGTCCTCTGGAACCGTCATGGTTACTGCCTGTT
AATGATTTCGCTCGTTCTGTAAGCAGCGCCGCCTTCTCCCGCAGAAACGA
AGGTCAAGAGACTCGAGCAGCATCGTAAGAGGGCGTTTAACCACCCCTTG
CATTCGCGGGTATCCTCCAAGAGATTCCCCTTTCCTTCGTCTTCGCCTCG
AGTCTATTTCACACTCGCGTGGTGAAGTTGCTGCTTTTGCGTTTACAACG
CCGTGGCCGTCAAGAGATGCACCGCGCTGTGATGGCAGCCAGCAATCGTT
TCTTTGATCGGATCGGTGTAGCCTTTCCACTTCCCTCCCGGCTCTGCTTT
CCGCACGACGACACAGGCATTTCGCACAGTTGCCGTGCATCTGCTGAAGC
GTTCTTTGTCAAGGTCCGTCGCGGAAACCGGTTAAGCACAAGACGTCGAA
GCTGAAAGGGCCGAATCGGCCGGGCGCCTTGCAGCATGACGAACGAACTC
TTGAGCTTCCAAAAGCCGGCCGATGCCAACATCCTTCACGTCACTCGCTT
GTCAAACACTGGTGAGGCCCCCTGACTGTTTTCTCCCCCATGCTGCCCTC
TCAAACTGCATTTCATACGGAGATCAAAAGGCTTTCCCAGAAGAACTCCG
TGTGCATGACGCTTGCCTCATTTCATCCGAACATCCTTCCCGACCTTTGC
TTTTATCGCACCGCAGCGACGGAGGACGGGGTGGCCGCACTCTTCCAGCG
CTACGGCGCCCTATGCAGAGTGAAGGTCAAGGACTCGAAGAGCTACGGGC
GGTTCGCCTTCGTTGAGTTCTTTTCTCGCCATTCGGCTTCGCTTGCCCGC
AAAGCCCTCGCCAACAAGATGCTGGACTCCGTATGGTGGGACTGCGTGGG
GCGCGAGGTCCGCGTGGCGTCGCGAAAGGGCAAAGGAAAGAGCGTTCCCC
GCGGCAGCGGTGCTGGCACCGGAAGCGGCGATGGCGACGGTAGCGGCGGT
AACGGCACCGGCAGCGGCAGCAGCGGGAGCAACGACGACGGCACTCCCGG
CAGCGGCGAAGCCGCTCGCGCCCCGCCGTCCACCTGCGCTTGCGACGAGC
TCCTGGCACCTCATCAGTGCACCGCCATGGCCAACCACTTTCTCGGCTTC
GACGGTAAGGAACGCGTTGCTCTCATTTCTTCACGAAAACCTTTCTTTGC
CCCAAGGCGCTATAATTGACTAGCGGAGCCCTCCCTCCCCTCGCATAGTG
ATAACAAGGAGCCTATACTCCTTCCAAGATACACGGTGCTCGACCAGCTC
ATAATCCCGTAACCCCGTGCGTTGCGTTCTCCAGGCTGGCGGTGCAGGGT
GATCCAGTTGCCGAGGCTGATGAGGGCCCCCGCGGTCGACTACGGAGGCT
GTTTCGACGACTGTGCCGCCGATGGCGACGTCAACATACAAGGCCCGGGT
GCTCCAAGAAGAGCATGCGTCAGCTCTTGCTTCGTCAATGGAGAATCTGG
CCGCGGCGGCGGAGGCGGGCTCAGGCATGACGGCGGTGGCGGCGGCGGCT
TTGGAGAGTGGGAGCTGCCATGCACCCCCGGCCCCGAAGTCCGGCGCAGG
AAGGCTGCCGCCGCGCCCGCCGCTGACGAAGAGGATCCGGAACTGCGCTC
GGCCGCCCGGGACGCGTTGGAGTTGGCGCCCGCTTTTTCGGAGGCTGCGT
GGGGGCAGAAGGAGCGCGGGGCGCCCCTCAGCTTCTCCGAGTGCGTGGCC
TGCGCCGCACTTGAGGTGGAGCTGAAGGACGGTCGGACCGTTACCGGTTG
CGGCGTCGCCCGCCTTCCTCTCGGCGCTGCTGCTTCCGCCGCCGCCGCCG
CCGCCAGGGGTGCCGCCGGCGGTAATGCCGCCAGAGCGAGCGCCGGTGCC
GTCGACGCCGCAGCCGCCACGGCGGGCGCCACCGACCCAGGGGCCATTGC
CCTGTCCAAGAAGCTGGCGCTGGGCGCTGCCCGTCAGGCCGCCTTCCAGC
GGCTGCGCCTGGTAGTTCTCGACGGGAGGTGCCGCCACGTGGTGATTGTT
CCGTGGGAAGGACCCCGCTGCGGCCCTGTCGTGATGAGCGGTTTTGTTCC
GGGCGGCAAGGGCGACGGCCGAGCAGTGTGAGAAGCAAGAACGGCACTTG
GGTGTCGGTGAGGTGGCCGGCACACAGTAATTTTCTTCATTATTATTTCG
ACGCTCTGTGAAAGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig966:14..2729+

>mRNA_P-wetherbeei_contig966.1.1 ID=mRNA_P-wetherbeei_contig966.1.1|Name=mRNA_P-wetherbeei_contig966.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1311bp|location=Sequence derived from alignment at P-wetherbeei_contig966:14..2729+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAACGAACTCTTGAGCTTCCAAAAGCCGGCCGATGCCAACATCCT
TCACGTCACTCGCTTGTCAAACACTGCGACGGAGGACGGGGTGGCCGCAC
TCTTCCAGCGCTACGGCGCCCTATGCAGAGTGAAGGTCAAGGACTCGAAG
AGCTACGGGCGGTTCGCCTTCGTTGAGTTCTTTTCTCGCCATTCGGCTTC
GCTTGCCCGCAAAGCCCTCGCCAACAAGATGCTGGACTCCGTATGGTGGG
ACTGCGTGGGGCGCGAGGTCCGCGTGGCGTCGCGAAAGGGCAAAGGAAAG
AGCGTTCCCCGCGGCAGCGGTGCTGGCACCGGAAGCGGCGATGGCGACGG
TAGCGGCGGTAACGGCACCGGCAGCGGCAGCAGCGGGAGCAACGACGACG
GCACTCCCGGCAGCGGCGAAGCCGCTCGCGCCCCGCCGTCCACCTGCGCT
TGCGACGAGCTCCTGGCACCTCATCAGTGCACCGCCATGGCCAACCACTT
TCTCGGCTTCGACGGCTGGCGGTGCAGGGTGATCCAGTTGCCGAGGCTGA
TGAGGGCCCCCGCGGTCGACTACGGAGGCTGTTTCGACGACTGTGCCGCC
GATGGCGACGTCAACATACAAGGCCCGGGTGCTCCAAGAAGAGCATGCGT
CAGCTCTTGCTTCGTCAATGGAGAATCTGGCCGCGGCGGCGGAGGCGGGC
TCAGGCATGACGGCGGTGGCGGCGGCGGCTTTGGAGAGTGGGAGCTGCCA
TGCACCCCCGGCCCCGAAGTCCGGCGCAGGAAGGCTGCCGCCGCGCCCGC
CGCTGACGAAGAGGATCCGGAACTGCGCTCGGCCGCCCGGGACGCGTTGG
AGTTGGCGCCCGCTTTTTCGGAGGCTGCGTGGGGGCAGAAGGAGCGCGGG
GCGCCCCTCAGCTTCTCCGAGTGCGTGGCCTGCGCCGCACTTGAGGTGGA
GCTGAAGGACGGTCGGACCGTTACCGGTTGCGGCGTCGCCCGCCTTCCTC
TCGGCGCTGCTGCTTCCGCCGCCGCCGCCGCCGCCAGGGGTGCCGCCGGC
GGTAATGCCGCCAGAGCGAGCGCCGGTGCCGTCGACGCCGCAGCCGCCAC
GGCGGGCGCCACCGACCCAGGGGCCATTGCCCTGTCCAAGAAGCTGGCGC
TGGGCGCTGCCCGTCAGGCCGCCTTCCAGCGGCTGCGCCTGGTAGTTCTC
GACGGGAGGTGCCGCCACGTGGTGATTGTTCCGTGGGAAGGACCCCGCTG
CGGCCCTGTCGTGATGAGCGGTTTTGTTCCGGGCGGCAAGGGCGACGGCC
GAGCAGTGTGA
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