mRNA_P-wetherbeei_contig9649.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9649.1.1
Unique NamemRNA_P-wetherbeei_contig9649.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9649.1.1 vs. uniprot
Match: D7FVS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS5_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.870e-49
Identity = 79/124 (63.71%), Postives = 100/124 (80.65%), Query Frame = 1 
Query:    1 MDDKGKTLHGRLEFFDRNVHQLTKHMTNAVEHHKDGVAQDMRFSARVKDVAAQEPFMDLQDRLVALAEITERIALERRIIMCERAQAQVLEKLAEIQAQVIGPTKLLLADRDSCIKALLKASVK 372
            +D+KG+ LHGRLEFFDRNV QL +H++  V HH+DGV   + FS ++K +AAQEPF DLQDRLV LAEITERI+LER+ IM +RA++QVL KLA+I+  VI PT+ LL DRDSC+KAL+KA  K
Sbjct:    3 LDEKGRRLHGRLEFFDRNVAQLIRHISQTVGHHQDGVKHGISFSTKIKTIAAQEPFADLQDRLVGLAEITERISLERKNIMIDRAKSQVLNKLADIKKTVIAPTQALLQDRDSCVKALVKAEEK 126
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BLAST of mRNA_P-wetherbeei_contig9649.1.1 vs. uniprot
Match: A0A836CPR2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR2_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.650e-48
Identity = 78/124 (62.90%), Postives = 100/124 (80.65%), Query Frame = 1 
Query:    1 MDDKGKTLHGRLEFFDRNVHQLTKHMTNAVEHHKDGVAQDMRFSARVKDVAAQEPFMDLQDRLVALAEITERIALERRIIMCERAQAQVLEKLAEIQAQVIGPTKLLLADRDSCIKALLKASVK 372
            +DDKG+ + GR+EFF+RN+H+L+KH+T  V  HK GV   M+FS RVKDVAAQEPF DLQDRLVAL+E+TERIALER+  +C+RA+ QVL KL E+Q +VI PTK LL DRD CI++L+KA  +
Sbjct:    3 LDDKGRMMRGRIEFFERNIHKLSKHLTTMVAQHKAGVDVGMKFSERVKDVAAQEPFADLQDRLVALSEVTERIALERKGALCDRAEQQVLAKLTEVQTRVIAPTKALLKDRDECIQSLVKAETE 126
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BLAST of mRNA_P-wetherbeei_contig9649.1.1 vs. uniprot
Match: W7TTF8_9STRA (FAM92 protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTF8_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.180e-26
Identity = 53/116 (45.69%), Postives = 80/116 (68.97%), Query Frame = 1 
Query:    1 MDDKGKTLHGRLEFFDRNVHQLTKHMTNAVEHHKDGVAQDMRFSARVKDVAAQEPFMDLQDRLVALAEITERIALERRIIMCERAQAQVLEKLAEIQAQVIGPTKLLLADRDSCIK 348
            MD+KG+ L GRL+F +RNV  L + +   + +H +G    M  S +V+D AAQE F+DLQ+ L+A+AE T+R+A ERR IMCERA+ +V+     I ++V+ PT+LLL DR+  ++
Sbjct:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALR 116
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BLAST of mRNA_P-wetherbeei_contig9649.1.1 vs. uniprot
Match: A0A835YUU3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUU3_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 4.990e-5
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 MDDKGKTLHGRLEFFDRNVHQLTKHMTNAVEHHK-DGVAQDM 123
            +DDK + + GR+EFF+RN+H+L+KH+T  V  HK D ++ DM
Sbjct:    3 LDDKCRMMRGRIEFFERNIHKLSKHLTTMVAQHKGDNMSIDM 44
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9649.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FVS5_ECTSI1.870e-4963.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CPR2_9STRA1.650e-4862.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TTF8_9STRA6.180e-2645.69FAM92 protein n=2 Tax=Nannochloropsis gaditana Tax... [more]
A0A835YUU3_9STRA4.990e-550.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9649contigP-wetherbeei_contig9649:1243..2044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog42099.EPrPV00000015513
Model size372
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.48e-13
EggNOG OGs2A8KZ@1|root,2RYGR@2759|Eukaryota,1MG9E@121069|Pythiales
Descriptionfunction. Source PGD
Cds size372
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187103.7474675-CDS-P-wetherbeei_contig9649:1242..13451683187103.7474675-CDS-P-wetherbeei_contig9649:1242..1345Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9649 1243..1345 +
1683187103.7576303-CDS-P-wetherbeei_contig9649:1658..18521683187103.7576303-CDS-P-wetherbeei_contig9649:1658..1852Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9649 1659..1852 +
1683187103.7660413-CDS-P-wetherbeei_contig9649:1969..20441683187103.7660413-CDS-P-wetherbeei_contig9649:1969..2044Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9649 1970..2044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9649.1.1prot_P-wetherbeei_contig9649.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9649 1243..2044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9649.1.1

>prot_P-wetherbeei_contig9649.1.1 ID=prot_P-wetherbeei_contig9649.1.1|Name=mRNA_P-wetherbeei_contig9649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MDDKGKTLHGRLEFFDRNVHQLTKHMTNAVEHHKDGVAQDMRFSARVKDV
AAQEPFMDLQDRLVALAEITERIALERRIIMCERAQAQVLEKLAEIQAQV
IGPTKLLLADRDSCIKALLKASVK
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mRNA from alignment at P-wetherbeei_contig9649:1243..2044+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9649.1.1 ID=mRNA_P-wetherbeei_contig9649.1.1|Name=mRNA_P-wetherbeei_contig9649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=802bp|location=Sequence derived from alignment at P-wetherbeei_contig9649:1243..2044+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGACAAGGGCAAAACTCTGCACGGTCGACTTGAATTCTTCGACAG
AAATGTGCACCAGCTCACCAAGCACATGACGAACGCTGTCGAACACCACA
AAGGTAAGACAGATGTATGTTATGCTCGCAAATATATTCCTCTTCTAAGG
TGCTGCTGCTGTGATATCTCATTTAGAAGCCGCAGCATCGCTGAGCAGCA
AAAAAAACTTTCGGCTTTTCCTGTATCCGCATCTCGCTCCCTTGATCTGA
GGCGTGCGGCAAGACATTCTGCCCTATCCTCTCAAAAGCATCCCCTCCTT
AAACCGATTCTCCCGTCGTAGCTCCTTCAATTTCTGCATAACCCAATTTT
TACGCCGTCCACGCTGACACCGTCCTTCCCACATCCGCCCTGCCCTGCCC
AATCTCGCCGTGCCAGATGGCGTGGCGCAGGACATGCGGTTCAGCGCTCG
CGTCAAGGACGTGGCGGCGCAGGAGCCGTTCATGGACCTGCAAGACCGGC
TGGTGGCGCTGGCGGAGATCACGGAGCGCATCGCGCTGGAGCGGCGGATC
ATCATGTGCGAGCGAGCGCAGGCGCAGGTGCTCGAGAAGCTCGCCGAGAT
TCAGGCACAGGTGAGCGCAGAGAGAGAGGCAGACAAAGCGGCCGGGAATT
CATTCCCATTCGTTGTGTCATTTTCTTTTTACGGCCGATTGATAGGCTAA
TCCATACTGGTTGGTACGAAATTGCAGGTGATCGGGCCGACGAAGCTTCT
TCTGGCCGACCGCGACAGCTGCATCAAGGCACTGCTGAAAGCGAGCGTTA
AG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9649:1243..2044+

>mRNA_P-wetherbeei_contig9649.1.1 ID=mRNA_P-wetherbeei_contig9649.1.1|Name=mRNA_P-wetherbeei_contig9649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig9649:1243..2044+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGACAAGGGCAAAACTCTGCACGGTCGACTTGAATTCTTCGACAG
AAATGTGCACCAGCTCACCAAGCACATGACGAACGCTGTCGAACACCACA
AAGATGGCGTGGCGCAGGACATGCGGTTCAGCGCTCGCGTCAAGGACGTG
GCGGCGCAGGAGCCGTTCATGGACCTGCAAGACCGGCTGGTGGCGCTGGC
GGAGATCACGGAGCGCATCGCGCTGGAGCGGCGGATCATCATGTGCGAGC
GAGCGCAGGCGCAGGTGCTCGAGAAGCTCGCCGAGATTCAGGCACAGGTG
ATCGGGCCGACGAAGCTTCTTCTGGCCGACCGCGACAGCTGCATCAAGGC
ACTGCTGAAAGCGAGCGTTAAG
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